View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6926_low_14 (Length: 316)
Name: NF6926_low_14
Description: NF6926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6926_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 5805373 - 5805167
Alignment:
| Q |
10 |
gagagaagaaacaacaacaacaatcttttgatcttgctgagaaagaagaaaattgatggaggagagaggattaacaagctagaaaatggggtttatgtgg |
109 |
Q |
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| T |
5805373 |
gagagaagaaacaacaacaacaatcttttgatcttgctgagaaagaagaaaattgatggaggagagaggattaacaagctagaaaatgggatttatgtgg |
5805274 |
T |
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| Q |
110 |
taggacagtatgaatatgtaaaaatgatgatgattatgattttgtgggtttggagattttggttgttgggatttgaaaatttgtgttgttagataaatga |
209 |
Q |
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| T |
5805273 |
taggacagtatgaatatgtaaaaatgatgatgattatgattttgtgggtttggagattttggttgttgggatttgaaaatttgtgttgttagataaatga |
5805174 |
T |
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| Q |
210 |
aagtgat |
216 |
Q |
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| T |
5805173 |
aagtgat |
5805167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 5805443 - 5805376
Alignment:
| Q |
31 |
aatcttttgatcttgctgagaaagaagaaaattgatggaggagagaggattaacaagctagaaaatgg |
98 |
Q |
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| T |
5805443 |
aatcttttgatattgctgagaaagaagaaaactgacggaggagagagaattggcaagctcaaaaatgg |
5805376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 36180130 - 36179910
Alignment:
| Q |
10 |
gagagaagaaacaacaacaacaatcttttgatcttgctgagaaa-gaagaaaattgatggaggagagaggattaacaagctagaaaatggggtttatgtg |
108 |
Q |
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| T |
36180130 |
gagagaagaaacaacaacaacaatcttttgatcttgctgagaaaagaagaaaattgatggaggagagaggattaacaagctcgaaaatggggtttatgtg |
36180031 |
T |
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| Q |
109 |
gtaggacagtatgaat-------------atgtaaaaatgatgatgattatgattttgtgggtttggagattttggttgttgggatttgaaaatttgtgt |
195 |
Q |
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| T |
36180030 |
gtagggcagtatgaatttttaacatgatgatgtaaaaatgatgatgattatgattttgtgggtttggagattttggttgttgggatttgaaaatttgtgt |
36179931 |
T |
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| Q |
196 |
tgttagataaatgaaagtgat |
216 |
Q |
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| T |
36179930 |
tgttagataaatgaaagtgat |
36179910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 36180201 - 36180133
Alignment:
| Q |
30 |
caatcttttgatcttgctgagaaagaagaaaattgatggaggagagaggattaacaagctagaaaatgg |
98 |
Q |
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| T |
36180201 |
caatcttttgatattgctgagaaagaagaaaattgacggaggagagagaattggcaagctcgaaaatgg |
36180133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 11130578 - 11130368
Alignment:
| Q |
19 |
aacaacaacaacaatcttttgatcttgctgagaaagaagaaaattgatggaggagagaggattaacaagctagaaaatggggtttatgtggtaggacagt |
118 |
Q |
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| T |
11130578 |
aacaacaacaacaatcttttgatcttgctaagaaagaagaaaattgatggaggagagaggattaacaagctcgaaaatggggtttatgtggtagggcagt |
11130479 |
T |
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| Q |
119 |
atgaat-------------atgtaaaaatgatgatgattatgattttgtgggtttggagattttggttgttgggatttgaaaatttgtgttgttagataa |
205 |
Q |
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| T |
11130478 |
atgaatttttaacatgatgatgtaaaaatgatgatgattatgattttgtgggtttggagattttggttgttgggatttgaaaatttgtgttgttagataa |
11130379 |
T |
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| Q |
206 |
atgaaagtgat |
216 |
Q |
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| T |
11130378 |
atgaaagtgat |
11130368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 11130661 - 11130593
Alignment:
| Q |
30 |
caatcttttgatcttgctgagaaagaagaaaattgatggaggagagaggattaacaagctagaaaatgg |
98 |
Q |
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| T |
11130661 |
caatcatttgatattgctgagaaagaagaaaattgacggaggagagagaattggcaaactcgaaaatgg |
11130593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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