View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6926_low_17 (Length: 266)
Name: NF6926_low_17
Description: NF6926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6926_low_17 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 38238540 - 38238291
Alignment:
| Q |
18 |
gttaaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgttactgatactttgaaactatcagataattcaaaaggaatga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38238540 |
gttaaatgggttgattgggatgattttatagtgcctgttaagatatatatacttgatgttactgatactttgaaactatcagataattcaaaaggaatga |
38238441 |
T |
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| Q |
118 |
actcagatcatgactgcaaggtaaatgcattcattacgaaacatgtttgtcgaaatgggttccgtgtagttgggatgccctgcattcacgcaatcaatcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38238440 |
actcagatcatgactgcaaggtaaatgcattcattacgaaacatgtttgtcgaaatgggttccgtgtagttgggatgccctgcattcacgcaatcaatcc |
38238341 |
T |
|
| Q |
218 |
atcagtg-actgttggatcaggatcggacaattcacaaaatatacagatt |
266 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38238340 |
atcagtgtactgttggatcaggatcagacaattcacaaaatatacagatt |
38238291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 38220630 - 38220506
Alignment:
| Q |
18 |
gttaaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgttactgatactttgaaactatcagataattcaaaaggaatga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38220630 |
gttaaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgttactgatactttgaaactatcagataattcaaaaggaatga |
38220531 |
T |
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| Q |
118 |
actcagatcatgactgcaaggtaaa |
142 |
Q |
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||||||| ||||| ||||||||||| |
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| T |
38220530 |
actcagaacatgattgcaaggtaaa |
38220506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 38227008 - 38226818
Alignment:
| Q |
21 |
aaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgttactgatactttgaaactatcagataattcaaaaggaatgaact |
120 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| |
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| T |
38227008 |
aaatgggttgattgggatgattttatagtgcctgttaagatatatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaact |
38226909 |
T |
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| Q |
121 |
cagatcatgactgcaaggtaaatgcattcattacgaaacat--gtttgtcgaaatgggttccgtgtagttgggatgccctgcattcacgca |
209 |
Q |
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| T |
38226908 |
caaaccatgattgcaaggtaaatgaattcattaagaaacattagtttttagaaatagattccgtgtagttgggctaccctagattcacgca |
38226818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 38248620 - 38248454
Alignment:
| Q |
24 |
tgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgttactgatactttgaaactatcagataattcaaaaggaatgaactcag |
123 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||| ||||||| |||| || |||||||||||||||| |||||||||||||||| |||| |
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| T |
38248620 |
tgggttgattgggatgattttatagtgcccgttaagatatatataattgatgtcactggtagtttgaaactatcagatgattcaaaaggaatgaaatcag |
38248521 |
T |
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| Q |
124 |
atcatgactgcaaggtaaatgcattcattacgaaacat---gtttgtcgaaatgggttccgtgtagt |
187 |
Q |
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||||||| |||||||||||||||||||| | ||||||| |||||| ||||| | ||||||||||| |
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| T |
38248520 |
atcatgattgcaaggtaaatgcattcatcaagaaacatttagtttgtggaaatagattccgtgtagt |
38248454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 38253743 - 38253598
Alignment:
| Q |
16 |
cagttaaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgttactgatactttgaaactatcagataattcaaaaggaat |
115 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| | | |
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| T |
38253743 |
cagtgaaatgggttgattgggatgattttatagtgcctgttaagatatatataattgatgttactgatactttgaaaccatcagatgattcaaaagaatt |
38253644 |
T |
|
| Q |
116 |
gaactcagatcatgactgcaaggtaaatgcattcattacgaaacat |
161 |
Q |
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||||||||| ||||| |||||||||| | |||||||| ||||||| |
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| T |
38253643 |
gaactcagaccatgattgcaaggtaagtaaattcattaagaaacat |
38253598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 38214585 - 38214411
Alignment:
| Q |
21 |
aaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgttactgatactttgaaactatcagataattcaaaaggaatgaact |
120 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||| ||||||| ||||||||||| |||||| |
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| T |
38214585 |
aaatgggtcgattgggatgattttattgtgcctgtgaagatatatataattgatgttactgatagtttgaaaccatcagatgattcaaaaggattgaact |
38214486 |
T |
|
| Q |
121 |
cagatcatgactgcaaggtaaatgcattcattacgaaac---atgtttgtcgaaatgggttccgtgtagttggga |
192 |
Q |
| |
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| |||||||| ||||||||||||| |||||| | ||||| |||||| ||||||| |||| ||||||||||| |
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| T |
38214485 |
cggatcatgattgcaaggtaaatgaattcatcaagaaactagtagtttgtggaaatggattccatgtagttggga |
38214411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 38243478 - 38243336
Alignment:
| Q |
18 |
gttaaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgttactgatactttgaaactatcagataattcaaaaggaatga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| |||| | |||||| ||||||||| |||||||||| || |
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| T |
38243478 |
gttaaatgggttgattgggatgattttatagtgcctcttaagatatatgtaattgatgttaccgatagtatgaaacaatcagataactcaaaaggaacga |
38243379 |
T |
|
| Q |
118 |
actcagatcatgactgcaaggtaaatgcattcattacgaaaca |
160 |
Q |
| |
|
||| |||||||| ||||||||||||| |||||| | |||||| |
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| T |
38243378 |
actttgatcatgattgcaaggtaaatgaattcatcaagaaaca |
38243336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 258
Target Start/End: Complemental strand, 17434138 - 17433898
Alignment:
| Q |
21 |
aaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgttactgatactttgaaactatcagataattcaaaaggaatgaact |
120 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||||||||||||| ||| ||||||||| || |||||||||||| ||||| |
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| T |
17434138 |
aaatggattgattgggatgattttatagtgcctgttaaggcatacataattgatgttactgatagtttaaaactatcaaatgattcaaaaggaacgaact |
17434039 |
T |
|
| Q |
121 |
cagatcatgactgcaaggtaaatgcattcattacgaaaca---tgtttgtcgaaatgggttccgtgtagttgggatgccctgcattcacgcaatcaatcc |
217 |
Q |
| |
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|||||||||| || |||||||||| ||||| | ||| || ||||||| ||||||| ||||||||||||||||| ||||||||||| ||| | ||| |
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| T |
17434038 |
cagatcatgattgtaaggtaaatgatttcatcaagaatcatgttgtttgttgaaatggattccgtgtagttgggataccctgcattcatgcagtgaatga |
17433939 |
T |
|
| Q |
218 |
atcagtgactgttggatcaggatcggacaattcacaaaata |
258 |
Q |
| |
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|||||||| |||||||||| |||| | |||||| |||||| |
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| T |
17433938 |
atcagtgattgttggatcaaaatcgaagaattcataaaata |
17433898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 17455238 - 17454994
Alignment:
| Q |
21 |
aaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgttactgatactttgaaactatcagataattcaaaaggaatgaact |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| ||||| ||| ||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
17455238 |
aaatgggttgattgggatgaatttatagttcctcttaagacatacataattgatgttactgatagtttgaaactatcagatgattcaaaaggaatgaact |
17455139 |
T |
|
| Q |
121 |
cagatcatgactgcaaggtaaatgcattcattacgaaac---atgtttgtcgaaatgggttccgtgtagttgggatgccctgcattcacgcaatcaatcc |
217 |
Q |
| |
|
|||||||||| || |||||||||| ||||| | || | ||||||| |||||| ||||| ||||||||||| || |||||||||||| | ||| |
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| T |
17455138 |
cagatcatgattgtaaggtaaatgatttcatcaaaaatcttgttgtttgtgaaaatggattccgcgtagttgggataccatgcattcacgcactgaatgg |
17455039 |
T |
|
| Q |
218 |
atcagtgactgttggatcaggatcggacaattcacaaaatataca |
262 |
Q |
| |
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|||||||| |||||||||| | |||| | ||||||||||||||| |
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|
| T |
17455038 |
atcagtgattgttggatcaaaaccggaaagttcacaaaatataca |
17454994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 21547011 - 21547063
Alignment:
| Q |
63 |
tatatacttgatgttactgatactttgaaactatcagataattcaaaaggaat |
115 |
Q |
| |
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|||||| ||||||| |||||||||||||| ||||||||||| || |||||||| |
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| T |
21547011 |
tatatatttgatgtgactgatactttgaagctatcagataagtctaaaggaat |
21547063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 11479291 - 11479357
Alignment:
| Q |
51 |
cctgctaagatatatatacttgatgttactgatactttgaaactatcagataattcaaaaggaatga |
117 |
Q |
| |
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|||| |||||| |||||| ||||||| |||||||||||||| | |||||||| || |||||||||| |
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| T |
11479291 |
cctgttaagatttatatatttgatgtgactgatactttgaagatttcagataagtccaaaggaatga |
11479357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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