View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6926_low_2 (Length: 767)
Name: NF6926_low_2
Description: NF6926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6926_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 259 - 751
Target Start/End: Complemental strand, 17137616 - 17137127
Alignment:
| Q |
259 |
gtaaataacaatatcaggactaagactataatgtacatattctatcatacatgttgaaaattcagtgtttttagattatgtaattctataggaatggagt |
358 |
Q |
| |
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|||||||||||||| |||| || ||||| ||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17137616 |
gtaaataacaatattaggattaggactacaatgtacatattctatcatccatgccgagaattcagtgtttttagattatgtaattctataggaatggagt |
17137517 |
T |
|
| Q |
359 |
gctgcagaggagaaactcgtggcaggacggagtgtatggtacaaactgtccaatctctccaggacagaacttcacttatattcttcaagtaaaagatcag |
458 |
Q |
| |
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|||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
17137516 |
gctgcagaggagaaactcatggcaagatggagtgtatggtacaaattgtccaatctctccaggaaagaac---acttatattcttcaagtaaaagatcag |
17137420 |
T |
|
| Q |
459 |
attggcagctatttctactttccttcccttgcatttcacaaggcagcaggtggttatggcggtttcacaatcgctactcgctccgtgattcctgtacctt |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17137419 |
attggcagctatttctactttccttcccttgcatttcacaaggcagcaggaggttatggcggtttcacaatcgctactcgctccgtgattcctgtacctt |
17137320 |
T |
|
| Q |
559 |
ttgatcctccatccggagatttcaccatacaggcaggagattggtacaaaagaaatcacagagttaagttttaactaagacacagccttcactgtttaag |
658 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
17137319 |
ttgatcctccatccggagatttcaccatactggcaggagattggtacaaaagaaatcacacagttaagttttaactaagaaacagccttcactgtttaag |
17137220 |
T |
|
| Q |
659 |
aaatcttgaataaatcatgacttaatttgtgtttatttttgcaggatttgagggccattttagatagcagaaaaaatcttcctttccctgatg |
751 |
Q |
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| T |
17137219 |
aaatcttgaataaatcatgacttaatttgtgtttatttttgcaggatttgagggccattttagatagcggaaaaaatcttcctttccctgatg |
17137127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 263 - 751
Target Start/End: Original strand, 17346179 - 17346666
Alignment:
| Q |
263 |
ataacaatatcaggactaagactataatgtacatattctatcatacatgttgaaaattcagtgtttttagattatgtaattctataggaatggagtgctg |
362 |
Q |
| |
|
||||||||||||||||||||| || |||| |||||||||||||| | |||||| ||||||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
17346179 |
ataacaatatcaggactaagagtacaatgcacatattctatcatccgtgttgagaattcagtgttttaagattatgtaattttataggaatggagtgcta |
17346278 |
T |
|
| Q |
363 |
cagaggagaaactcgtggcaggacggagtgtatggtacaaactgtccaatctctccaggacagaacttcacttatattcttcaagtaaaagatcagattg |
462 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17346279 |
cagaggagaaactcatggcaggatggagtgtatggtacaaattgtccaatctctccaggacagaacttcacttatattcttcaagtaaaagatcagattg |
17346378 |
T |
|
| Q |
463 |
gcagctatttctactttccttcccttgcatttcacaaggcagcaggtggttatggcggtttcacaatcgctactcgctccgtgattcctgtaccttttga |
562 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || |
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| T |
17346379 |
gtagctatttctactttccttcccttgcatttcacaaggcagcaggtggttatggcggtttcacaatcgctagtcgctccgtgattcccgtacctttcga |
17346478 |
T |
|
| Q |
563 |
tcctccatccggagatttcaccatacaggcaggagattggtacaaaagaaatcacagagttaagttttaactaagacacagccttcactgtttaagaaat |
662 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| ||||||||||| |
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| T |
17346479 |
tcctccatccggagattacaccatattggcaggagattggtacaaaagaaatcacacagttaagttttaactaagaaatagccttcacggtttaagaaat |
17346578 |
T |
|
| Q |
663 |
cttgaataaatcatgacttaatttgtgtttatttttgcaggatttgagggccattttagatagcagaaaaaatcttcctttccctgatg |
751 |
Q |
| |
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|||||||| ||||||||| || ||||||| ||||||||||||||||| ||||||||||||||| ||| ||||||||||||| |||| |
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| T |
17346579 |
cttgaataggtcatgacttcatctgtgttt-tttttgcaggatttgagagccattttagatagcggaagtgatcttcctttcccggatg |
17346666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 17345972 - 17346166
Alignment:
| Q |
27 |
atgattacttaaattgaaaatctttgcgc-cctctgaaacaatttcggggaataaatggaacaatcctcagtggaacaatacaatcaaggatttcaattt |
125 |
Q |
| |
|
|||||||||||||||||||||| | | | ||||||||| ||||||| ||||||||||||| ||||||| ||| |||||||||| ||||||||||||| |
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| T |
17345972 |
atgattacttaaattgaaaatcctcgagttcctctgaaataatttcgacgaataaatggaaccatcctcaaaggaccaatacaatcgaggatttcaattt |
17346071 |
T |
|
| Q |
126 |
catggttattttttaatttcgttaatttcagagacc---accccgccagacacctataattctaaggactaaattggtgatccgcctgtataaaa |
217 |
Q |
| |
|
||| |||||||| |||| ||||||||||||||||| | || | || |||||||||| ||||||||||||||||| |||||| |||||||| |
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| T |
17346072 |
catatttatttttaaattccgttaatttcagagacctggaacctacatgagacctataattttaaggactaaattggtggtccgccggtataaaa |
17346166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 17137807 - 17137689
Alignment:
| Q |
20 |
attcttaatgattacttaaattgaaaatctttgcgcc-ctctgaaacaatttcggggaataaatggaacaatcctcagtggaacaatacaatcaaggatt |
118 |
Q |
| |
|
||||| |||||| |||||||||||||||| | | | | ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
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|
| T |
17137807 |
attctcaatgatcacttaaattgaaaatcctcgagtcgctctgaaacaatttcggggaataaatggaacaatcctcaaacgaacaaatcaatcgaggatt |
17137708 |
T |
|
| Q |
119 |
tcaatttcatggttatttt |
137 |
Q |
| |
|
||| |||||| ||||||| |
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|
| T |
17137707 |
tcattttcataattatttt |
17137689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 387 - 513
Target Start/End: Complemental strand, 28940916 - 28940790
Alignment:
| Q |
387 |
ggagtgtatggtacaaactgtccaatctctccaggacagaacttcacttatattcttcaagtaaaagatcagattggcagctatttctactttccttccc |
486 |
Q |
| |
|
||||| |||||||||| ||||| ||| |||| || |||||||||| || | |||||||| |||||||| ||||| |||| ||||| ||||| || | |
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| T |
28940916 |
ggagtttatggtacaacatgtcccatccctcctgggaagaacttcacatacacacttcaagtcaaagatcaaattggaagcttcttctattttccatctc |
28940817 |
T |
|
| Q |
487 |
ttgcatttcacaaggcagcaggtggtt |
513 |
Q |
| |
|
|||| |||||||||||||| ||||||| |
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|
| T |
28940816 |
ttgcttttcacaaggcagctggtggtt |
28940790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 424 - 478
Target Start/End: Original strand, 55711324 - 55711378
Alignment:
| Q |
424 |
agaacttcacttatattcttcaagtaaaagatcagattggcagctatttctactt |
478 |
Q |
| |
|
||||||||||||||| |||||| || |||||||||||||| |||||||||||||| |
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|
| T |
55711324 |
agaacttcacttatactcttcaggtgaaagatcagattggtagctatttctactt |
55711378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 346 - 618
Target Start/End: Complemental strand, 37092134 - 37091862
Alignment:
| Q |
346 |
ataggaatggagtgctgcagaggagaaactcgtggcaggacggagtgtatggtacaaactgtccaatctctccaggacagaacttcacttatattcttca |
445 |
Q |
| |
|
||||||||||||||| ||||||||| || || ||||| || ||||| ||||| |||||||||||||| | ||||| |||||||| |||||| ||||||| |
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|
| T |
37092134 |
ataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttca |
37092035 |
T |
|
| Q |
446 |
agtaaaagatcagattggcagctatttctactttccttcccttgcatttcacaaggcagcaggtggttatggcggtttcacaatcgctactcgctccgtg |
545 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||| ||||||||||| |||||||| |||||||||||||| || ||| ||| | ||| | || |
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|
| T |
37092034 |
agtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatggtggcatcaaaattaacagccgccctatg |
37091935 |
T |
|
| Q |
546 |
attcctgtaccttttgatcctccatccggagatttcaccatacaggcaggagattggtacaaaagaaatcaca |
618 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
37091934 |
attcctgtaccgtttcctcctccatcgaatgatttcaccatattggcaggagattggtacaacagaaatcaca |
37091862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 425 - 513
Target Start/End: Complemental strand, 53754506 - 53754418
Alignment:
| Q |
425 |
gaacttcacttatattcttcaagtaaaagatcagattggcagctatttctactttccttcccttgcatttcacaaggcagcaggtggtt |
513 |
Q |
| |
|
||||||||| |||||||||||||| || ||||| ||||| |||| || ||||||||| || || |||||||| || ||||| ||||||| |
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| T |
53754506 |
gaacttcacatatattcttcaagtgaaggatcaaattggaagcttttactactttccatctctagcatttcaaaaagcagctggtggtt |
53754418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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