View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6926_low_20 (Length: 222)
Name: NF6926_low_20
Description: NF6926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6926_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 36390859 - 36390655
Alignment:
| Q |
1 |
cagacccgttatcttcttgtgtttcctttgcacactacttcttatcgcttcagcagcaactgaaccgtccaaagatggaaaagaaggtacttattttaca |
100 |
Q |
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| T |
36390859 |
cagacccgttatattcttgtgtttcctttgcacactacttcttatcgcttcagcagcaactgaaccgtccaaagatggaaaagaaggtacttattttaca |
36390760 |
T |
|
| Q |
101 |
taaatataatccatgtgctcttgagagtgtatgtgttttttctctgnnnnnnnnncctttataatgttagtcaattaagttgaacatttatcatatcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36390759 |
taaatataatccatgtgctcttgagagtgtatgtgttttttctctgttttttttccctttataatgttagtcaattaagttgaacatttatcatatccat |
36390660 |
T |
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| Q |
201 |
cttaa |
205 |
Q |
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||||| |
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| T |
36390659 |
cttaa |
36390655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 36364521 - 36364436
Alignment:
| Q |
5 |
cccgttatcttcttgtgtttcctttgcacactacttcttatcgcttcagcagcaactgaaccgtccaaagatggaaaagaaggtac |
90 |
Q |
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||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
36364521 |
cccgttatcttcttgtgcttcctctgcgcattacttcttatcgcttcagcagcaacggaaccgtccaaagatggaaaacaaggtac |
36364436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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