View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6926_low_7 (Length: 352)
Name: NF6926_low_7
Description: NF6926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6926_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 53657936 - 53657593
Alignment:
| Q |
1 |
aaatctaaccaattcaccacttttcatcctaataataataataatcaacattattaatacagttgatccagttggtaagaagtcgaatgataaagacctc |
100 |
Q |
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| T |
53657936 |
aaatctaaccaattcaccacttttcatcctaataataataat---caacattattaaaacagttgatccagttggtaagaagtccagtgataaagacctc |
53657840 |
T |
|
| Q |
101 |
attagtgcgcgacgggtaaatatctttgtctctgatcattgatgtatctgagggactcaacttatctgaacttttaattagcaataaaaacaaaataatc |
200 |
Q |
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| T |
53657839 |
gttagtgcgcgacgggtaaatatctttgtctctgatcattgatgtatctgagggactcaacttatctgaacttttaattagcaataaaaacaaaataatc |
53657740 |
T |
|
| Q |
201 |
aacggttcccacagaatcatcatcactaattattctaacacat-----------tataggagattcatactcctctgttatccttgtttactaaaacgtg |
289 |
Q |
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| T |
53657739 |
aacggttcccacagaatcatcatcactaattattctaacacattgaaaccatagtataggagaatcatactcctctgttatccttgtttactaaaacgtg |
53657640 |
T |
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| Q |
290 |
ggaacgacgccgtatggacagtccattagcatagatgaaggaactga |
336 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53657639 |
ggaacgacgccgtatggacagtccattagcatagatgaaggaactga |
53657593 |
T |
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