View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6926_low_8 (Length: 349)
Name: NF6926_low_8
Description: NF6926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6926_low_8 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 38237973 - 38238311
Alignment:
| Q |
11 |
catagatcacatagccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttg |
110 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38237973 |
catagatcatatagccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttg |
38238072 |
T |
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| Q |
111 |
atactcattctgaaacaaagaaaaccatgttgctcattatatacccaaagttttatgttttagagttaaattgagatttacacaaacaaagtacgtgtat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38238073 |
atactcattctgaaacaaagaaaaccatgttgctcactatatacccaaagttttatgttttagagttaaattgagatttacacaaacaaagtacgtgtat |
38238172 |
T |
|
| Q |
211 |
ggattccctgcagtcgagagactctacattcatacaatcagtaacacaataactgttggatcaagattgacgataataaattccatgcctgcagtatttt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38238173 |
ggattccctgcagtcgagagactctacattcatacaatcagtaacacaataactgttggatcaagattgacgataataaattccatgcctgcagtatttt |
38238272 |
T |
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| Q |
311 |
ggattttagaacaatcgaaatctgtatattttgtgaatt |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
38238273 |
ggattttagaacaatcgaaatctgtatattttgtgaatt |
38238311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 38242948 - 38243096
Alignment:
| Q |
11 |
catagatcacatagccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttg |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| |
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| T |
38242948 |
catagatcacatatccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaacttg |
38243047 |
T |
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| Q |
111 |
atactcattctgaaacaaagaaaaccatgttgctcattat-atacccaa |
158 |
Q |
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| T |
38243048 |
atactcaatctgaaacaaagaaatccatgttgctcactatgatacccaa |
38243096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 38226434 - 38226581
Alignment:
| Q |
11 |
catagatcacatagccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttg |
110 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| ||||| || ||||||||||||| ||||||||||||||| |
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| T |
38226434 |
catagatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttg |
38226533 |
T |
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| Q |
111 |
atactcattctgaaacaaagaaaaccatgttgctcattatatacccaa |
158 |
Q |
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||||||| ||||||||||| ||| ||||||||||| ||||||||||| |
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| T |
38226534 |
atactcagtctgaaacaaataaattcatgttgctcactatatacccaa |
38226581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 38220093 - 38220226
Alignment:
| Q |
11 |
catagatcacatagccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttg |
110 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| |||| |||| ||||||||||| |
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| T |
38220093 |
catagatcacataaccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttg |
38220192 |
T |
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| Q |
111 |
atactcattctgaaacaaagaaaaccatgttgct |
144 |
Q |
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||||||| |||||||||||||| |||| ||||| |
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| T |
38220193 |
atactcaacctgaaacaaagaaatccatattgct |
38220226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 38253301 - 38253435
Alignment:
| Q |
11 |
catagatcacatagccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttg |
110 |
Q |
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||||||||||||||||||| ||||| | ||||||||||||||| || ||||||||||| |||||||||||| || ||| |||||||||||| ||||| |
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| T |
38253301 |
catagatcacatagccaccggtttgtagtgggagacttgtcctttttacatgaacacacccatttccctccttttgatctatgctgcaagatttaacttc |
38253400 |
T |
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| Q |
111 |
atactcattctgaaacaaagaaaaccatgttgctc |
145 |
Q |
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||||||| |||||||||||||| | ||||||||| |
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| T |
38253401 |
atactcaacctgaaacaaagaaatctatgttgctc |
38253435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 38214053 - 38214189
Alignment:
| Q |
9 |
agcatagatcacatagccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaact |
108 |
Q |
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|||||||| ||||||||||||||||| | |||||||||||||||| ||||||||||||| ||||| | ||||| |||||| | |||||||||||| |
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| T |
38214053 |
agcatagacaacatagccaccagtttgtagtgggagacttgtcctcatcacatgaacacaaccatttctcaaattatgatctgtggtacaagattcaact |
38214152 |
T |
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| Q |
109 |
tgatactcattctgaaacaaagaaaaccatgttgctca |
146 |
Q |
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||||||||| |||||||||| ||| |||||||||||| |
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| T |
38214153 |
tgatactcaacctgaaacaaa-aaatccatgttgctca |
38214189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 38248176 - 38248269
Alignment:
| Q |
39 |
tgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttgatactcattctgaaacaaagaaa |
133 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
38248176 |
tgggagacttgtccttttcacatgaacacacccatttccctcctattgatctgtgctgcaagattcaac-tgatactcaacctgaaacaaagaaa |
38248269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 17454528 - 17454670
Alignment:
| Q |
9 |
agcatagatcacatagccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaact |
108 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
17454528 |
agcatagatcacatagccaccagtttgcagtgggagacttgtcctcttcacatgaacacaaccatttccctcctcatggtctgtgctgcaagattcaact |
17454627 |
T |
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| Q |
109 |
tgatactcattctgaaacaaagaaaaccatgttgctcattata |
151 |
Q |
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||||||||| ||||||||||||||| ||||||||||| |||| |
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| T |
17454628 |
tgatactcaatctgaaacaaagaaattcatgttgctcactata |
17454670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 17433449 - 17433591
Alignment:
| Q |
9 |
agcatagatcacatagccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaact |
108 |
Q |
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||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||||||||| |
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| T |
17433449 |
agcatagatcacatatccaccagtttgtagtgggagacttgtcctcttcacatgaacacaaccattttcctcctcatggtctctgctgcaagattcaact |
17433548 |
T |
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| Q |
109 |
tgatactcattctgaaacaaagaaaaccatgttgctcattata |
151 |
Q |
| |
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||||||||| ||||||||||||||| |||||||||||| |||| |
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| T |
17433549 |
tgatactcaatctgaaacaaagaaatccatgttgctcactata |
17433591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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