View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6927_high_10 (Length: 454)
Name: NF6927_high_10
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6927_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 12143093 - 12143408
Alignment:
| Q |
1 |
gcttatcttgaacaagttttagtgcataaaattaaaatattatttcagca---taacatagtttatgtcaaaaggaaaaacagaattttatcagatcatc |
97 |
Q |
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| T |
12143093 |
gcttatcttgaataagttttagtgcataaaattaaaatattatttcagcagcataacatagtttatgtcaaaaggaaaaacagaattttatcagatcatc |
12143192 |
T |
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| Q |
98 |
-cacaccagcaaatacagagattaaaatccctaaagatacatttttggtcttctttcatagaagtaattcttgatttgggaggagatatgtaaatatcct |
196 |
Q |
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| T |
12143193 |
acacaccagcaaatacagagattaaaatccctaaagatacatttttggtcttctttcatagaagtaattcttgatttgggaggagatatgtaaatatcct |
12143292 |
T |
|
| Q |
197 |
tcattcacttcaaaagtccctagccgattgtttccatcctccagtctcctcctcttgattgtaactccgttcgtagttcctctgcaaccaataattgata |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12143293 |
tcattcacttcaaaagtccctagccgattgtttccatcctccggtctcctcctcttgattgtaactccgttcgtagtttctctgcaaccaataattgata |
12143392 |
T |
|
| Q |
297 |
gtacattttaataggg |
312 |
Q |
| |
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|||||||||||||||| |
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| T |
12143393 |
gtacattttaataggg |
12143408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 195 - 312
Target Start/End: Original strand, 12150274 - 12150391
Alignment:
| Q |
195 |
cttcattcacttcaaaagtccctagccgattgtttccatcctccagtctcctcctcttgattgtaactccgttcgtagttcctctgcaaccaataattga |
294 |
Q |
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|||||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||| |||||||||| | || | || ||||||||||||||||||| |
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| T |
12150274 |
cttcattcacttcaaaagtcactagctgattctttccatccaccagtctcctcctcttcattgtaactctgatcatcatttctctgcaaccaataattga |
12150373 |
T |
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| Q |
295 |
tagtacattttaataggg |
312 |
Q |
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|||||||||||||||||| |
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| T |
12150374 |
tagtacattttaataggg |
12150391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 366 - 436
Target Start/End: Original strand, 12143462 - 12143532
Alignment:
| Q |
366 |
gccttattacctcaggtgtaaaagtgagagcaaccttaacctctccacaatatttttcatctttcacaagt |
436 |
Q |
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| T |
12143462 |
gccttattacctcaggtgtaaaagtgagagcaaccttaacctctccacaatatttttcatctttcacaagt |
12143532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 366 - 435
Target Start/End: Original strand, 12150447 - 12150516
Alignment:
| Q |
366 |
gccttattacctcaggtgtaaaagtgagagcaaccttaacctctccacaatatttttcatctttcacaag |
435 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| |
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| T |
12150447 |
gccttattacctcaggtgtaaaagtgagagcaaccttaatctctccacaatattcttcatccttcacaag |
12150516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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