View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6927_high_12 (Length: 436)

Name: NF6927_high_12
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6927_high_12
NF6927_high_12
[»] chr5 (5 HSPs)
chr5 (264-421)||(40563759-40563916)
chr5 (82-194)||(40563571-40563685)
chr5 (334-387)||(32313785-32313838)
chr5 (335-379)||(1419727-1419771)
chr5 (351-387)||(31644393-31644429)
[»] chr7 (8 HSPs)
chr7 (272-383)||(30259936-30260047)
chr7 (334-383)||(29372870-29372919)
chr7 (334-387)||(29455937-29455990)
chr7 (341-376)||(12098458-12098493)
chr7 (334-376)||(3359932-3359974)
chr7 (313-387)||(29992764-29992838)
chr7 (334-379)||(14608483-14608528)
chr7 (334-387)||(34117403-34117456)
[»] chr3 (10 HSPs)
chr3 (261-383)||(44000213-44000335)
chr3 (334-387)||(28625003-28625056)
chr3 (335-389)||(8067142-8067196)
chr3 (334-376)||(41538173-41538215)
chr3 (349-387)||(42547462-42547500)
chr3 (334-384)||(10747168-10747218)
chr3 (293-386)||(25395563-25395656)
chr3 (334-379)||(25954407-25954452)
chr3 (334-379)||(27176400-27176445)
chr3 (334-387)||(31883106-31883159)
[»] chr6 (6 HSPs)
chr6 (334-386)||(10552723-10552777)
chr6 (334-379)||(27824779-27824824)
chr6 (334-387)||(13412645-13412698)
chr6 (334-387)||(29424696-29424749)
chr6 (334-379)||(32614067-32614112)
chr6 (334-387)||(35004257-35004310)
[»] chr8 (9 HSPs)
chr8 (334-384)||(14958909-14958959)
chr8 (321-377)||(16595241-16595297)
chr8 (334-384)||(54121-54171)
chr8 (334-372)||(18216754-18216792)
chr8 (334-372)||(28746285-28746323)
chr8 (334-384)||(37474669-37474719)
chr8 (350-387)||(40155352-40155389)
chr8 (334-386)||(15351684-15351735)
chr8 (340-376)||(27408983-27409019)
[»] chr1 (9 HSPs)
chr1 (293-387)||(47092966-47093060)
chr1 (334-378)||(30798856-30798900)
chr1 (334-385)||(47242679-47242730)
chr1 (342-384)||(49799336-49799378)
chr1 (343-387)||(32785366-32785410)
chr1 (313-387)||(4895349-4895423)
chr1 (350-387)||(25343390-25343427)
chr1 (350-387)||(34283999-34284036)
chr1 (334-387)||(38663088-38663141)
[»] scaffold0062 (1 HSPs)
scaffold0062 (334-379)||(3724-3769)
[»] chr4 (9 HSPs)
chr4 (334-387)||(9435348-9435401)
chr4 (334-387)||(42034468-42034521)
chr4 (337-387)||(43189848-43189898)
chr4 (341-387)||(49495576-49495622)
chr4 (334-379)||(7001812-7001857)
chr4 (334-387)||(20644324-20644377)
chr4 (321-386)||(31445946-31446010)
chr4 (334-387)||(44355938-44355991)
chr4 (334-379)||(50186486-50186531)
[»] scaffold0077 (1 HSPs)
scaffold0077 (319-383)||(7543-7607)
[»] scaffold0054 (1 HSPs)
scaffold0054 (275-387)||(19854-19966)
[»] scaffold0155 (1 HSPs)
scaffold0155 (340-387)||(33646-33693)
[»] scaffold0021 (2 HSPs)
scaffold0021 (334-376)||(108398-108440)
scaffold0021 (334-376)||(111168-111210)
[»] chr2 (3 HSPs)
chr2 (354-384)||(18278862-18278892)
chr2 (349-378)||(82877-82906)
chr2 (334-383)||(1247106-1247155)


Alignment Details
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 264 - 421
Target Start/End: Original strand, 40563759 - 40563916
Alignment:
Q  264 taaactacatcacaactttttatataatgtataagttgtttgaaatatgaaaattattttttgttcattgaaaatcgtataagatcaaaaattattcaat 363  Q
    ||||| ||||||||||||||||||  | | ||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40563759 taaaccacatcacaactttttataccacgcataagttgtctgaaataagaaaatcattttttgttcattgaaaatcgtataagatcaaaaattattcaat 40563858  T
Q  364 atcataaaagtttgtcttgtgttggttattttactttatgttgtattgttatgttttg 421  Q
    ||||||||| ||||||||||||| ||| |||| | |||| ||||||||||||||||||    
T  40563859 atcataaaaatttgtcttgtgttagttgttttgcgttatattgtattgttatgttttg 40563916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 40563571 - 40563685
Alignment:
Q  82 gcaagaggaggagagagttgatttatt--agaggaaacttataccaataagtaattgataattgataaattaatggattgaatcaatgttgtgtttgatg 179  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40563571 gcaagtggaggagagagttgatttattttagaggaaacttataccaataagtaattgataattgataaattaatggattgaatcaatggtgtgtttgatg 40563670  T
Q  180 tgctacaaaataaag 194  Q
    |||||||||||||||    
T  40563671 tgctacaaaataaag 40563685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 32313838 - 32313785
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    |||||||||||||||||||||||| ||||||  ||| || |||||| |||||||    
T  32313838 aaaatcgtataagatcaaaaattaatcaatactatacaaatttgtcatgtgttg 32313785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 1419727 - 1419771
Alignment:
Q  335 aaatcgtataagatcaaaaattattcaatatcataaaagtttgtc 379  Q
    |||| |||||||||||||| ||| ||||||| |||||||||||||    
T  1419727 aaattgtataagatcaaaacttaatcaatattataaaagtttgtc 1419771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 31644429 - 31644393
Alignment:
Q  351 aaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  31644429 aaaattattcaatgtcataaaaatttgtcttgtgttg 31644393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 383
Target Start/End: Original strand, 30259936 - 30260047
Alignment:
Q  272 atcacaactttttatataatgtataagttgtttgaaatatgaaaattattttttgttcattgaaaatcgtataagatcaaaaattattcaatatcataaa 371  Q
    ||||||||||||||| | |  || ||||||| | |||||| ||| | ||||||| |||||  ||| ||||||||||||||||||||||||||||||||||    
T  30259936 atcacaactttttatcttacttacaagttgtctaaaatatcaaattaattttttattcatcaaaactcgtataagatcaaaaattattcaatatcataaa 30260035  T
Q  372 agtttgtcttgt 383  Q
    | ||||||||||    
T  30260036 aatttgtcttgt 30260047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 383
Target Start/End: Original strand, 29372870 - 29372919
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgt 383  Q
    |||||| ||||||| ||||||||||| |||| ||||||||||||||||||    
T  29372870 aaaatcatataagaccaaaaattatttaataccataaaagtttgtcttgt 29372919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 29455937 - 29455990
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    |||||| ||||||| |||| ||||||||||| |||||||||||||| |||||||    
T  29455937 aaaatcatataagaccaaatattattcaataccataaaagtttgtcatgtgttg 29455990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 376
Target Start/End: Original strand, 12098458 - 12098493
Alignment:
Q  341 tataagatcaaaaattattcaatatcataaaagttt 376  Q
    |||||||||||| |||||||||||||||||||||||    
T  12098458 tataagatcaaagattattcaatatcataaaagttt 12098493  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 376
Target Start/End: Original strand, 3359932 - 3359974
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagttt 376  Q
    ||||| ||||||||  |||||||||||||||||||||||||||    
T  3359932 aaaatagtataagacaaaaaattattcaatatcataaaagttt 3359974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 29992764 - 29992838
Alignment:
Q  313 aaaattattttttgttcattgaaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    ||||| ||||||||| ||   |||||||||||||| |||||||||||||| |||||| || ||| | ||||||||    
T  29992764 aaaataattttttgtccaccaaaaatcgtataagaccaaaaattattcaaaatcatagaactttattttgtgttg 29992838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 14608483 - 14608528
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtc 379  Q
    |||||| |||||||||||||||| || |||| ||||||||||||||    
T  14608483 aaaatcatataagatcaaaaattgtttaataccataaaagtttgtc 14608528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 34117456 - 34117403
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    |||||||||||| |  ||||||||||||||  ||||||| ||||||||||||||    
T  34117456 aaaatcgtataaaacgaaaaattattcaatgccataaaaatttgtcttgtgttg 34117403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 383
Target Start/End: Complemental strand, 44000335 - 44000213
Alignment:
Q  261 cactaaactacatcacaactttttatataatgtataagttgtttgaaatatgaaaattattttttgttcattgaaaatcgtataagatcaaaaattattc 360  Q
    |||||||| ||||||||| ||||| |   | ||| ||||| | |||||||  |||||  |||||||| ||   |||||||||||||| ||||||||||||    
T  44000335 cactaaaccacatcacaattttttgtcccacgtacaagttatctgaaatacaaaaatagttttttgtccaccaaaaatcgtataagaccaaaaattattc 44000236  T
Q  361 aatatcataaaagtttgtcttgt 383  Q
    |||| ||||||||||||||||||    
T  44000235 aataccataaaagtttgtcttgt 44000213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 28625003 - 28625056
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    |||||| |||||||  ||||||||||||||| ||||||||||||||||||||||    
T  28625003 aaaatcttataagacaaaaaattattcaataccataaaagtttgtcttgtgttg 28625056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 8067142 - 8067196
Alignment:
Q  335 aaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttggt 389  Q
    ||||| ||||||||||||||| |||||||| ||||||||| |||| |||||||||    
T  8067142 aaatcatataagatcaaaaatcattcaataccataaaagtatgtcatgtgttggt 8067196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 376
Target Start/End: Original strand, 41538173 - 41538215
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagttt 376  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  41538173 aaaatcgtataaaatcaaaaatcattcaatatcataaaagttt 41538215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 387
Target Start/End: Original strand, 42547462 - 42547500
Alignment:
Q  349 caaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  42547462 caaaaattattcaatatcataaaagtttgtcatgtgttg 42547500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 384
Target Start/End: Complemental strand, 10747218 - 10747168
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtg 384  Q
    |||||||||||| |  |||||||||||||| |||||||| |||||||||||    
T  10747218 aaaatcgtataaaacaaaaaattattcaatgtcataaaaatttgtcttgtg 10747168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 25395656 - 25395563
Alignment:
Q  293 tataagttgtttgaaatatgaaaattattttttgttcattgaaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgtt 386  Q
    |||||||||| | |||||  ||||| |  ||||||||| | |||||||||||| |  |||||| || |||| ||||||||||||||||| ||||    
T  25395656 tataagttgtctaaaataccaaaataacattttgttcactaaaaatcgtataaaacaaaaaataatgcaatgtcataaaagtttgtcttatgtt 25395563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 25954452 - 25954407
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtc 379  Q
    |||| ||||||| || ||||||||||||||||||||||| ||||||    
T  25954452 aaaagcgtataaaataaaaaattattcaatatcataaaaatttgtc 25954407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 27176445 - 27176400
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtc 379  Q
    |||||| |||||||| |||||||||||||||  |||||||||||||    
T  27176445 aaaatcatataagattaaaaattattcaataaaataaaagtttgtc 27176400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 31883106 - 31883159
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    |||||||||||| |  |||||||||||||| |||||||| |||||| |||||||    
T  31883106 aaaatcgtataaaacaaaaaattattcaatgtcataaaaatttgtcctgtgttg 31883159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 386
Target Start/End: Complemental strand, 10552777 - 10552723
Alignment:
Q  334 aaaatcgtataagatcaaaaattattca--atatcataaaagtttgtcttgtgtt 386  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||    
T  10552777 aaaatcgtataagatcaaaaattattcaatatatcataaaagtttgtcttatgtt 10552723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 27824779 - 27824824
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtc 379  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||    
T  27824779 aaaatcatataagatcaaaaattattcaataccataaaagtttgtc 27824824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 13412698 - 13412645
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    |||||| |||||||| |||||||||||||||  |||||| |||||| |||||||    
T  13412698 aaaatcatataagatgaaaaattattcaatactataaaaatttgtcatgtgttg 13412645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 29424696 - 29424749
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    |||| |||| |||| |||||||||||||||| |||||||||| ||||| |||||    
T  29424696 aaaaacgtacaagaccaaaaattattcaataccataaaagttcgtcttatgttg 29424749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 32614067 - 32614112
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtc 379  Q
    |||||||||||||| ||||||||||  |||| ||||||||||||||    
T  32614067 aaaatcgtataagaccaaaaattatataataccataaaagtttgtc 32614112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 35004257 - 35004310
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    ||||| |||||| | |||||| |||||||||||||||||||||||  |||||||    
T  35004257 aaaattgtataataccaaaaactattcaatatcataaaagtttgttatgtgttg 35004310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 334 - 384
Target Start/End: Complemental strand, 14958959 - 14958909
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtg 384  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  14958959 aaaatcgtataagatcaaaaatgatttaatatcataaaagtttgccttgtg 14958909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 377
Target Start/End: Original strand, 16595241 - 16595297
Alignment:
Q  321 tttttgttcattgaaaatcgtataagatcaaaaattattcaatatcataaaagtttg 377  Q
    ||||||||||   |||||||||||||| |||||||||||||||| || |||||||||    
T  16595241 tttttgttcaccaaaaatcgtataagaccaaaaattattcaataccaaaaaagtttg 16595297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 384
Target Start/End: Complemental strand, 54171 - 54121
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtg 384  Q
    |||||||| |||||  ||||||||||||||| ||||||||||| |||||||    
T  54171 aaaatcgtttaagacaaaaaattattcaataccataaaagtttatcttgtg 54121  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 18216754 - 18216792
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaa 372  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  18216754 aaaattgtataagatcaaaaattattcaataccataaaa 18216792  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 28746323 - 28746285
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaa 372  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  28746323 aaaatcgtacaagatcaaaaattattcaatgtcataaaa 28746285  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 384
Target Start/End: Complemental strand, 37474719 - 37474669
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtg 384  Q
    |||||||||||| || |||||||||||||| |||||||| |||||| ||||    
T  37474719 aaaatcgtataaaataaaaaattattcaatgtcataaaaatttgtcatgtg 37474669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 40155352 - 40155389
Alignment:
Q  350 aaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    |||||||||||||||||||||||||||| | |||||||    
T  40155352 aaaaattattcaatatcataaaagtttgacatgtgttg 40155389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 386
Target Start/End: Complemental strand, 15351735 - 15351684
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgtt 386  Q
    |||||||||||| ||||||| |||||||||||||||||| ||| || ||||||    
T  15351735 aaaatcgtataaaatcaaaa-ttattcaatatcataaaaatttatcatgtgtt 15351684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 27409019 - 27408983
Alignment:
Q  340 gtataagatcaaaaattattcaatatcataaaagttt 376  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  27409019 gtataagataaaaaattattcaacatcataaaagttt 27408983  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 293 - 387
Target Start/End: Original strand, 47092966 - 47093060
Alignment:
Q  293 tataagttgtttgaaatatgaaaattattttttgttcattgaaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    |||||||| ||| |||||  ||||| ||||||||||||   |||||||||||||   |||||||||||||||| |||||| |||||| |||||||    
T  47092966 tataagttatttaaaatacaaaaataattttttgttcacaaaaaatcgtataaggcaaaaaattattcaatattataaaaatttgtcatgtgttg 47093060  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 30798856 - 30798900
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgt 378  Q
    |||||||||||||| |||||||||||||||||||||||| |||||    
T  30798856 aaaatcgtataagaccaaaaattattcaatatcataaaattttgt 30798900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 385
Target Start/End: Original strand, 47242679 - 47242730
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgt 385  Q
    ||||| ||||||||||||||||||||||||||| |||| ||||||| |||||    
T  47242679 aaaattgtataagatcaaaaattattcaatatcgtaaatgtttgtcatgtgt 47242730  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 384
Target Start/End: Complemental strand, 49799378 - 49799336
Alignment:
Q  342 ataagatcaaaaattattcaatatcataaaagtttgtcttgtg 384  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  49799378 ataagaccaaatattattcaatatcataaaagtttgtcttgtg 49799336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 32785366 - 32785410
Alignment:
Q  343 taagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    ||||| ||||||||||||| || ||||||||||||||||||||||    
T  32785366 taagaccaaaaattattcattaccataaaagtttgtcttgtgttg 32785410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 4895423 - 4895349
Alignment:
Q  313 aaaattattttttgttcattgaaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    ||||| ||||||||||||   ||||||||||||||  |||| ||||||||||  ||||| |||||| ||||||||    
T  4895423 aaaataattttttgttcaccaaaaatcgtataagactaaaacttattcaatactataaacgtttgtattgtgttg 4895349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 25343390 - 25343427
Alignment:
Q  350 aaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  25343390 aaaaattattcaatgtcataaaaatttgtcttgtgttg 25343427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 34283999 - 34284036
Alignment:
Q  350 aaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  34283999 aaaacttattcaataccataaaagtttgtcttgtgttg 34284036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 38663141 - 38663088
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    |||||||||||| |  |||||||||||||| |||||||| |||||| |||||||    
T  38663141 aaaatcgtataaaacaaaaaattattcaatgtcataaaaatttgtcctgtgttg 38663088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 3724 - 3769
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtc 379  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||    
T  3724 aaaatcatataagataaaaaattattcaatatcataaaagtttgtc 3769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 9435401 - 9435348
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||| |||||||    
T  9435401 aaaatggtataagaccaaaaataattcaatatcataaaagtttgtcgtgtgttg 9435348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 42034468 - 42034521
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    ||||| |||||| |||||||||||||||||| |||||||||||||| |||||||    
T  42034468 aaaattgtataaaatcaaaaattattcaataccataaaagtttgtcatgtgttg 42034521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 43189848 - 43189898
Alignment:
Q  337 atcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    |||||||||||  ||||||||||||||| ||||||||||| || |||||||    
T  43189848 atcgtataagacaaaaaattattcaataccataaaagtttatcatgtgttg 43189898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 387
Target Start/End: Complemental strand, 49495622 - 49495576
Alignment:
Q  341 tataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    |||||||| ||||||| |||||||||||||||||||||  |||||||    
T  49495622 tataagataaaaaattgttcaatatcataaaagtttgttatgtgttg 49495576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 7001857 - 7001812
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtc 379  Q
    |||||||||||||| |||||||||||||||  ||||||| ||||||    
T  7001857 aaaatcgtataagaccaaaaattattcaatgccataaaaatttgtc 7001812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 20644324 - 20644377
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    |||||||||||| |||||||||||||||||   |||||||| |||| |||||||    
T  20644324 aaaatcgtataaaatcaaaaattattcaatgcgataaaagtgtgtcatgtgttg 20644377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 386
Target Start/End: Original strand, 31445946 - 31446010
Alignment:
Q  321 tttttgttcattgaaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgtt 386  Q
    ||||||||||   ||||||||| ||||| ||||||||| ||||| |||||||||||||| ||||||    
T  31445946 tttttgttcacaaaaaatcgtacaagat-aaaaattatccaataccataaaagtttgtcatgtgtt 31446010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 44355938 - 44355991
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    ||||||||| |||| ||||| |||||||||| |||||||||||| | |||||||    
T  44355938 aaaatcgtacaagaccaaaagttattcaatagcataaaagtttggcctgtgttg 44355991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 50186531 - 50186486
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtc 379  Q
    |||||||||||| || |||||||||||||| |||||||| ||||||    
T  50186531 aaaatcgtataaaataaaaaattattcaatgtcataaaaatttgtc 50186486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 7543 - 7607
Alignment:
Q  319 attttttgttcattgaaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgt 383  Q
    ||||||||| |||| |||||  ||||||| ||||||||||||||||  |||||||||||||||||    
T  7543 attttttgtccattaaaaattatataagaccaaaaattattcaatactataaaagtttgtcttgt 7607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 387
Target Start/End: Complemental strand, 19966 - 19854
Alignment:
Q  275 acaactttttatataatgtataagttgtttgaaatatgaaaattattttttgttcattgaaaatcgtataagatcaaaaattattcaatatcataaaagt 374  Q
    |||||||||| | | | ||| |||||||||||||||  |||||  | ||||||||||  ||||||| ||||   |||| ||||||||||| |||||||||    
T  19966 acaactttttgtttcacgtacaagttgtttgaaataccaaaatagtcttttgttcatcaaaaatcgcataacgccaaatattattcaataccataaaagt 19867  T
Q  375 ttgtcttgtgttg 387  Q
    ||||| |||||||    
T  19866 ttgtcatgtgttg 19854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 387
Target Start/End: Original strand, 33646 - 33693
Alignment:
Q  340 gtataagatcaaaaattattcaatatcataaaagtttgtcttgtgttg 387  Q
    |||||||| |||||||||||||||||||||||||||| |||| |||||    
T  33646 gtataagaccaaaaattattcaatatcataaaagtttatcttttgttg 33693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 376
Target Start/End: Original strand, 108398 - 108440
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagttt 376  Q
    ||||||||||||||   ||||||||||||||||||||||||||    
T  108398 aaaatcgtataagacataaaattattcaatatcataaaagttt 108440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 376
Target Start/End: Original strand, 111168 - 111210
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagttt 376  Q
    ||||||||||||||   ||||||||||||||||||||||||||    
T  111168 aaaatcgtataagacataaaattattcaatatcataaaagttt 111210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 384
Target Start/End: Complemental strand, 18278892 - 18278862
Alignment:
Q  354 attattcaatatcataaaagtttgtcttgtg 384  Q
    |||||||||||||||||||||||||||||||    
T  18278892 attattcaatatcataaaagtttgtcttgtg 18278862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Complemental strand, 82906 - 82877
Alignment:
Q  349 caaaaattattcaatatcataaaagtttgt 378  Q
    ||||||||||||||||||||||||||||||    
T  82906 caaaaattattcaatatcataaaagtttgt 82877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 383
Target Start/End: Complemental strand, 1247155 - 1247106
Alignment:
Q  334 aaaatcgtataagatcaaaaattattcaatatcataaaagtttgtcttgt 383  Q
    |||||||||||| || ||||||||||||||  ||||||| ||||||||||    
T  1247155 aaaatcgtataaaataaaaaattattcaatgccataaaaatttgtcttgt 1247106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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