View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6927_high_13 (Length: 427)

Name: NF6927_high_13
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6927_high_13
NF6927_high_13
[»] chr8 (21 HSPs)
chr8 (45-362)||(13152430-13152755)
chr8 (45-362)||(27190593-27190910)
chr8 (76-362)||(28846435-28846726)
chr8 (45-362)||(14446647-14446971)
chr8 (45-214)||(9256359-9256528)
chr8 (241-389)||(9256208-9256356)
chr8 (51-304)||(24333586-24333850)
chr8 (45-166)||(30791494-30791615)
chr8 (45-178)||(16532667-16532800)
chr8 (45-178)||(21958518-21958651)
chr8 (76-162)||(10467786-10467872)
chr8 (45-145)||(10014471-10014571)
chr8 (87-167)||(42446935-42447015)
chr8 (45-120)||(32372022-32372097)
chr8 (273-362)||(23449066-23449148)
chr8 (45-120)||(32342880-32342955)
chr8 (45-120)||(32355367-32355442)
chr8 (45-120)||(32359486-32359561)
chr8 (45-115)||(40146046-40146116)
chr8 (49-118)||(34228269-34228338)
chr8 (55-113)||(2826349-2826407)
[»] chr1 (18 HSPs)
chr1 (45-362)||(14498712-14499036)
chr1 (45-362)||(9636936-9637260)
chr1 (45-362)||(30559041-30559366)
chr1 (45-360)||(48606648-48606971)
chr1 (45-214)||(52753856-52754025)
chr1 (45-178)||(25017392-25017525)
chr1 (45-177)||(26272965-26273097)
chr1 (246-362)||(52754029-52754145)
chr1 (45-159)||(35949014-35949128)
chr1 (45-178)||(40864755-40864888)
chr1 (45-166)||(21973824-21973945)
chr1 (84-178)||(17127445-17127539)
chr1 (45-178)||(32379892-32380021)
chr1 (212-333)||(30054708-30054829)
chr1 (45-158)||(30054847-30054960)
chr1 (319-362)||(30054660-30054703)
chr1 (45-117)||(17874845-17874917)
chr1 (45-82)||(28463197-28463234)
[»] chr4 (15 HSPs)
chr4 (45-362)||(31944432-31944755)
chr4 (45-180)||(53693070-53693205)
chr4 (54-178)||(27364889-27365013)
chr4 (45-178)||(12211262-12211395)
chr4 (45-178)||(4325418-4325550)
chr4 (247-362)||(24104677-24104793)
chr4 (45-139)||(3074414-3074508)
chr4 (84-178)||(55464735-55464829)
chr4 (45-178)||(42843713-42843849)
chr4 (230-303)||(51379514-51379587)
chr4 (310-362)||(17359270-17359322)
chr4 (45-120)||(8897962-8898037)
chr4 (45-92)||(1147591-1147638)
chr4 (115-173)||(1147523-1147581)
chr4 (45-120)||(10632680-10632757)
[»] chr7 (21 HSPs)
chr7 (45-362)||(9230215-9230540)
chr7 (77-384)||(43727788-43728103)
chr7 (45-362)||(23179922-23180251)
chr7 (45-170)||(26493750-26493875)
chr7 (45-178)||(27387342-27387475)
chr7 (45-178)||(19399984-19400117)
chr7 (45-178)||(45197650-45197782)
chr7 (42-174)||(18375416-18375546)
chr7 (45-177)||(38575325-38575457)
chr7 (45-178)||(8638620-8638754)
chr7 (212-304)||(25024455-25024547)
chr7 (45-117)||(14088815-14088887)
chr7 (45-117)||(14398833-14398905)
chr7 (298-354)||(5287719-5287775)
chr7 (189-304)||(5287940-5288060)
chr7 (212-294)||(24276438-24276521)
chr7 (298-362)||(25024226-25024290)
chr7 (45-111)||(25024596-25024662)
chr7 (138-178)||(23804627-23804667)
chr7 (49-117)||(25491674-25491742)
chr7 (45-88)||(9557784-9557827)
[»] chr5 (13 HSPs)
chr5 (45-357)||(3055300-3055621)
chr5 (45-362)||(8785597-8785921)
chr5 (45-361)||(27168839-27169155)
chr5 (45-183)||(1280379-1280517)
chr5 (45-304)||(11852587-11852854)
chr5 (45-159)||(203875-203989)
chr5 (45-262)||(23244606-23244831)
chr5 (45-166)||(26540691-26540812)
chr5 (45-165)||(22541905-22542025)
chr5 (45-166)||(22712935-22713048)
chr5 (45-135)||(2228964-2229054)
chr5 (45-120)||(19518978-19519053)
chr5 (298-362)||(11849702-11849766)
[»] scaffold0178 (1 HSPs)
scaffold0178 (45-362)||(17554-17879)
[»] chr2 (14 HSPs)
chr2 (45-357)||(12539393-12539712)
chr2 (45-331)||(34317509-34317797)
chr2 (45-174)||(19951867-19951996)
chr2 (45-178)||(35649696-35649829)
chr2 (45-165)||(22483568-22483688)
chr2 (45-178)||(33453224-33453357)
chr2 (45-166)||(34526370-34526491)
chr2 (45-166)||(22464688-22464809)
chr2 (60-155)||(13308745-13308840)
chr2 (46-145)||(34907624-34907723)
chr2 (45-120)||(18425997-18426072)
chr2 (327-361)||(34318088-34318122)
chr2 (45-82)||(45121334-45121371)
chr2 (45-120)||(26656377-26656452)
[»] chr6 (12 HSPs)
chr6 (45-362)||(12180561-12180886)
chr6 (45-389)||(11970747-11971098)
chr6 (45-177)||(25599159-25599294)
chr6 (45-180)||(32442010-32442142)
chr6 (45-178)||(24074418-24074551)
chr6 (45-145)||(3050902-3051002)
chr6 (45-178)||(25340451-25340584)
chr6 (45-131)||(30621226-30621311)
chr6 (247-361)||(25340298-25340408)
chr6 (296-362)||(8035704-8035770)
chr6 (232-304)||(8035479-8035551)
chr6 (49-136)||(1296557-1296644)
[»] chr3 (14 HSPs)
chr3 (45-362)||(3856912-3857237)
chr3 (45-338)||(51261817-51262118)
chr3 (46-281)||(15667868-15668111)
chr3 (45-178)||(31989035-31989168)
chr3 (45-178)||(43137133-43137265)
chr3 (45-178)||(53710404-53710537)
chr3 (45-178)||(24908429-24908562)
chr3 (278-362)||(55194863-55194947)
chr3 (45-178)||(37381905-37382038)
chr3 (45-120)||(22934835-22934910)
chr3 (45-113)||(24988849-24988917)
chr3 (282-357)||(9741407-9741480)
chr3 (98-165)||(43585836-43585903)
chr3 (45-81)||(38282510-38282546)
[»] scaffold0019 (1 HSPs)
scaffold0019 (45-170)||(134890-135015)
[»] scaffold0007 (1 HSPs)
scaffold0007 (45-178)||(259924-260057)
[»] scaffold0198 (1 HSPs)
scaffold0198 (45-150)||(1430-1535)
[»] scaffold0168 (1 HSPs)
scaffold0168 (45-166)||(15832-15953)
[»] scaffold0015 (1 HSPs)
scaffold0015 (45-178)||(214197-214330)
[»] scaffold0012 (1 HSPs)
scaffold0012 (45-166)||(197123-197244)
[»] scaffold0002 (1 HSPs)
scaffold0002 (45-262)||(435384-435616)
[»] scaffold0726 (1 HSPs)
scaffold0726 (45-113)||(954-1022)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 45 - 362
Target Start/End: Original strand, 13152430 - 13152755
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  13152430 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttggaataataccaacatcatcaaatgacttgaatatctcccgctcgatgtaaca 13152529  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatat---tcataattctttctcacgggcttataaga-----ttactagcttattgacatggcttga 236  Q
    ||||||||||||||||||||||||| |||||||||| |   | | |||||||||||||||||||||||||     |||||||||| ||||||||||||||    
T  13152530 tatcatcaagtcattgaaccacacagcgttgatcatgttggtaacaattctttctcacgggcttataagattattttactagctttttgacatggcttga 13152629  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttatta 336  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||  |||||||||||||||||| |||||||||||| ||||||||    
T  13152630 taactggtgtacttccaacttttgttgatgttggtaatagctttggtgcaccctctattattgaagatccacaaattagaagttaaaatctaatttatta 13152729  T
Q  337 tgccatgttgtagaagtgattgtaag 362  Q
    | ||  ||||||||||||||||||||    
T  13152730 taccccgttgtagaagtgattgtaag 13152755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 45 - 362
Target Start/End: Complemental strand, 27190910 - 27190593
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||| |||||| ||||| |||||||| ||||| ||| | | ||||||||||||||||||||||||||||||||||||| | || ||||    
T  27190910 aattaggaggtaaatgtcctttctgagacatctttgcggtgaatattcgagtaatatcaacatcatcaagtgacttgaatatctcccgctaggtgcaaca 27190811  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatat---tcataattctttctcacgggcttataaga-----ttactagcttattgacatggcttga 236  Q
    |||||||||||||||||||||||||||||||||| | |   | | ||||||||||| |||||||||||||     |||||||||| ||||||||||||||    
T  27190810 tatcatcaagtcattgaaccacacatcgttgatcttgtttgtaacaattctttctcgcgggcttataagattattttactagcttgttgacatggcttga 27190711  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttatta 336  Q
     |||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||        ||||| |||||||| ||||||||||| |||||||||    
T  27190710 caactggtggacttccaacttttgttgatgttggtaatagctttggtgcactcgct--------agatctacaaattagaagttaaaatcagatttatta 27190619  T
Q  337 tgccatgttgtagaagtgattgtaag 362  Q
    || |  ||||||||||||||||||||    
T  27190618 tgtccagttgtagaagtgattgtaag 27190593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 76 - 362
Target Start/End: Complemental strand, 28846726 - 28846435
Alignment:
Q  76 ctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccacacatcgttg 175  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  28846726 ctttgcggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcgatgtac---atcatcaagtcattgaaccacacatcgttg 28846630  T
Q  176 atcatattcataa---ttctttctcacgggcttataagatta-----ctagcttattgacatggcttgataacttgtgtacttccaacttttgttcatgt 267  Q
    ||| | ||  |||   ||||||||||||| ||||||||||||     |||||||||||||| || |||  |||| ||  |||| ||||||||||| ||||    
T  28846629 atcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggcaactggtagacttacaacttttgttgatgt 28846530  T
Q  268 tggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttattatgccatgttgtagaagtgattgtaag 362  Q
    |||| |||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  28846529 tggttatagctttggtgcacccgatattgttgaagatccacaaattagaagttaaaatctgatttattatgtcatgttgtagaaatgattgtaag 28846435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 45 - 362
Target Start/End: Complemental strand, 14446971 - 14446647
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||| |||| ||||||||||||||||||||  ||||||||  ||| |||||||||||||||||||||||||||||||| | || | |||||||    
T  14446971 aattaggaggtgaatgtcctttccgagacctctttgcagtgaatgttagaataatatcaacatcatcaagtgacttgaatatctctctcttggtgtaaca 14446872  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatat--tcataattctttctcacgggcttataaga-----ttactagcttattgacatggcttgat 237  Q
    ||||||||||||||||||||||| |||||||||| | |  | | ||||||||||| | | |||||||||     ||||||||||||||||| | |||||     
T  14446871 tatcatcaagtcattgaaccacaaatcgttgatcttgtggtaacaattctttctcgcagacttataagattattttactagcttattgacaggacttgac 14446772  T
Q  238 aacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttattat 337  Q
     ||| ||| |||||||||||||||| ||||||||||||||||||||| ||||  ||| ||||||  ||||||||||| |||||||||||| |||||||||    
T  14446771 tactggtggacttccaacttttgttgatgttggtaatagctttggtgtacccaatattgttgaaattccacaaattagaagttaaaatctaatttattat 14446672  T
Q  338 gccatgttgtagaagtgattgtaag 362  Q
    |  ||||||||||||||||||||||    
T  14446671 gttatgttgtagaagtgattgtaag 14446647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 45 - 214
Target Start/End: Complemental strand, 9256528 - 9256359
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||| | ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9256528 aattaggaggtaaatgtcatttgcgagacctctttgcgatgaatgttcgaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 9256429  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatattcataattctttctcacgggcttataagatta 214  Q
    ||||||||||||||| ||||||||||| |||||||||||  ||||||||||||||| |||||||||||||    
T  9256428 tatcatcaagtcattaaaccacacatcattgatcatattggtaattctttctcacgtgcttataagatta 9256359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 241 - 389
Target Start/End: Complemental strand, 9256356 - 9256208
Alignment:
Q  241 ttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttattatgcc 340  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9256356 ttgtgtatttccaacttttgttgatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttattatgcc 9256257  T
Q  341 atgttgtagaagtgattgtaagnnnnnnnatgtataaagtgattgtaag 389  Q
    |||||| |||||||||||||||       ||||||||||||||||||||    
T  9256256 atgttgaagaagtgattgtaagtttttttatgtataaagtgattgtaag 9256208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 51 - 304
Target Start/End: Complemental strand, 24333850 - 24333586
Alignment:
Q  51 gaggtaaatgccctttccgagacctctttgcgatgaat---gttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaacatat 147  Q
    ||||||||| | |||||||||||||||||| | |||||   |||| ||| |||| |||||||||||||||||||||||||||||||||  ||||||||||    
T  24333850 gaggtaaattctctttccgagacctctttgtggtgaataatgttcgaataatattaacatcatcaagtgacttgaatatctcccgctcagtgtaacatat 24333751  T
Q  148 catcaagtcattgaaccacacatcgttgatcatat---tcataattctttctcacgggcttataaga-----ttactagcttattgacatggcttgataa 239  Q
    ||| ||||||||||| || |||||||||||| | |   | | |||||||||||||||||||||||||     ||||||||||||||||| | ||||| ||    
T  24333750 cataaagtcattgaatcatacatcgttgatcttgttggtaacaattctttctcacgggcttataagattattttactagcttattgacaagacttgacaa 24333651  T
Q  240 cttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagat 304  Q
    |  ||| ||||||||||||| || ||||||||||||| ||||||||||| ||||| || ||||||    
T  24333650 ccggtggacttccaacttttattgatgttggtaatagttttggtgcacctgctattgtcgaagat 24333586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 30791494 - 30791615
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||| ||| |||||||  |||||||||||||||||||||||||||||| |||||||    
T  30791494 aattaggtggtaaatgccctttccgagacctctttgcggtgaatgttcgaataatatcaatgtcatcaagtgacttgaatatctcccgctcggtgtaaca 30791593  T
Q  145 tatcatcaagtcattgaaccac 166  Q
    ||||||||||||||||||||||    
T  30791594 tatcatcaagtcattgaaccac 30791615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 16532667 - 16532800
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||||  ||| |||||||||||||||||||||||||||||||| | || | | |||||    
T  16532667 aattaggaggtaaatgccctttccgatatctctttgcggtgaatgtttgaataatatcaacatcatcaagtgacttgaatatctctcacttggtataaca 16532766  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatc 178  Q
    ||||||||||||||||||||||||||||||||||    
T  16532767 tatcatcaagtcattgaaccacacatcgttgatc 16532800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 21958651 - 21958518
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||| ||||||||| |||||||||    | ||||||| ||| |||||||||||||||||||||| |||||||||| ||||| |||||||    
T  21958651 aattaggaggtaaattccctttccgcgacctcttttgagttaatgttcgaataatatcaacatcatcaagtgactcgaatatctcctgctcggtgtaaca 21958552  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatc 178  Q
    ||||||||||||||| ||||||| || |||||||    
T  21958551 tatcatcaagtcattcaaccacatattgttgatc 21958518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 10467872 - 10467786
Alignment:
Q  76 ctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaa 162  Q
    |||| ||||| |||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  10467872 ctttccgatgcatgttcgaataatatcaacatcatcaaatgacttgattatctcccgctcgatgtaacatatcatcaagtcattgaa 10467786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 10014471 - 10014571
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||||||||||| | | |||||| || ||||||||  ||| ||||||||||||||||||||| ||||||||| ||||||| |||||||    
T  10014471 aattaggaggtaaatgccctttccaaaatctctttccggtgaatgtttgaataatatcaacatcatcaagtgacatgaatatcttccgctcggtgtaaca 10014570  T
Q  145 t 145  Q
    |    
T  10014571 t 10014571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 42447015 - 42446935
Alignment:
Q  87 atgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccaca 167  Q
    |||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||||||| |||| |||||| |||||||    
T  42447015 atgttcaaataatataaacgtcatcaagtgacttgaatatcttccgctcgatgtaacatataatcacgtcattcaaccaca 42446935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 32372097 - 32372022
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgactt 120  Q
    |||||||||||||||| |||||  |||||||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  32372097 aattaggaggtaaatgacctttttgagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgactt 32372022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 362
Target Start/End: Complemental strand, 23449148 - 23449066
Alignment:
Q  273 atagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttattatgccatgttgtagaagtgattgtaag 362  Q
    |||||||||||||||||||||| ||| ||||||||||||||       |||||||||||||||||||| ||||||| |||||||||||||    
T  23449148 atagctttggtgcacccgctattgttaaagatccacaaatt-------aaaatctgatttattatgccctgttgtaaaagtgattgtaag 23449066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 32342955 - 32342880
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgactt 120  Q
    |||||||||||||||| |||||  ||||||| |||||  ||||||||| ||| |||||||||||||||||||||||    
T  32342955 aattaggaggtaaatgacctttttgagacctttttgcagtgaatgttcgaataatatcaacatcatcaagtgactt 32342880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 32355442 - 32355367
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgactt 120  Q
    |||||||||||||||| |||||  ||||||| |||||  ||||||||| ||| |||||||||||||||||||||||    
T  32355442 aattaggaggtaaatgacctttttgagacctttttgcagtgaatgttcgaataatatcaacatcatcaagtgactt 32355367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 32359561 - 32359486
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgactt 120  Q
    |||||||||||||||| | |||  |||||||||||||  ||||||||| ||| |||||||||||||||||||||||    
T  32359561 aattaggaggtaaatgacatttttgagacctctttgcagtgaatgttcgaataatatcaacatcatcaagtgactt 32359486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 40146046 - 40146116
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagt 115  Q
    |||||||||||| ||||| |||||||||||||||||   ||||||||| ||| ||||||||||||||||||    
T  40146046 aattaggaggtagatgccatttccgagacctctttgttgtgaatgttcgaataatatcaacatcatcaagt 40146116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 34228269 - 34228338
Alignment:
Q  49 aggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgac 118  Q
    |||||||||||||  ||||| ||||||||||| | | ||||||| ||| |||||||||||||||||||||    
T  34228269 aggaggtaaatgcaatttccaagacctctttgtggtaaatgttcgaataatatcaacatcatcaagtgac 34228338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 2826349 - 2826407
Alignment:
Q  55 taaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaa 113  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||| |||||||||| |||||    
T  2826349 taaatgcccatgccgatacctctttgcggtgaatgttcgaataatatcaacattatcaa 2826407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 45 - 362
Target Start/End: Complemental strand, 14499036 - 14498712
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |    
T  14499036 aattaggaggtaaatgtcctttctgagacctctttgcgatgaatgttcgaataatatcaacatcatcaaatgacttgaatatctcccgctcgatgtaaga 14498937  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatattcataat---tctttctcacgggcttataagatta-----ctagcttattgacatggcttga 236  Q
    ||||||||||||||||| ||||| |||||||||||| ||  |||    ||||||||||| |||||||||||||     ||||||||||||||||||||||    
T  14498936 tatcatcaagtcattga-ccacaaatcgttgatcatgttggtaacaaatctttctcacgagcttataagattattttactagcttattgacatggcttga 14498838  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttatta 336  Q
    | ||| |||||||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  14498837 tgactggtgtacttccaacttttgttgatgttgataatagctttggtacacccgctattgttgaagatccacaaattaaaagttaaaatctgattaatta 14498738  T
Q  337 tgccatgttgtagaagtgattgtaag 362  Q
    |||| |||||||||||||||||||||    
T  14498737 tgccctgttgtagaagtgattgtaag 14498712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 45 - 362
Target Start/End: Complemental strand, 9637260 - 9636936
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||    
T  9637260 aattaggatgtaaatgccctttccgagacctctttgcggtgaatgttcaaataatatcaacatcatcaagtgacttgaatatcacccgctcggtgtaaca 9637161  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatat---tcataattctttctcacgggcttataaga----ttactagcttattgacatggcttgat 237  Q
    |||||||||||||||||||||| |||| |||||| | |   | | |||| |||||||||  |||||||||    |||||||||||||| || ||||| ||    
T  9637160 tatcatcaagtcattgaaccacgcatcattgatcttgttggtaacaattatttctcacgaacttataagattatttactagcttattggcagggctttat 9637061  T
Q  238 aacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttattat 337  Q
    |||  ||| |||| ||||||||||| ||||| ||||| ||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| |||    
T  9637060 aaccggtggactttcaacttttgttgatgttagtaatggctttggtgcacccgctattgttgaagatccaaaaattagaagttaaaatctgatttactat 9636961  T
Q  338 gccatgttgtagaagtgattgtaag 362  Q
    ||| |||||||||||||||||||||    
T  9636960 gccttgttgtagaagtgattgtaag 9636936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 45 - 362
Target Start/End: Original strand, 30559041 - 30559366
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||  | |||  |||| || ||| || ||||||||| ||| |||||| ||||||||||||||||||||||||| |||||| |||||||    
T  30559041 aattaggaggtaaatatcatttatgagatctatttacggtgaatgttcgaataatatcagcatcatcaagtgacttgaatatctctcgctcggtgtaaca 30559140  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatattcataa---ttctttctcacgggcttataaga-----ttactagcttattgacatggcttga 236  Q
    |||||||||||||| ||||||||||||||||||| | || ||||   ||||||||| || ||||||||||     |||||||||||||||||  ||||||    
T  30559141 tatcatcaagtcatagaaccacacatcgttgatcttgttgataacaattctttctcgcgagcttataagaatattttactagcttattgacaaagcttga 30559240  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttatta 336  Q
     |||  ||| |||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  30559241 caaccggtggactttcaacttttgttgatgttggtaatagctttggtgcacccgctattgttgaagatccacaaattataagttaaaatctgatttatta 30559340  T
Q  337 tgccatgttgtagaagtgattgtaag 362  Q
    |||| |||||||||||||||||||||    
T  30559341 tgccctgttgtagaagtgattgtaag 30559366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 45 - 360
Target Start/End: Original strand, 48606648 - 48606971
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||| |||||||||||||||||  ||||||||||||| ||| ||||  ||| |||||||||| ||||||| |||||||||||||||||||| |||||||    
T  48606648 aattatgaggtaaatgccctttcgaagacctctttgcggtgagtgtttgaataatatcaacattatcaagttacttgaatatctcccgctcggtgtaaca 48606747  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatattcata---attctttctcacgggcttataagatta-----ctagcttattgacatggcttga 236  Q
    |||||||||||||||||||||||||||||||||| | ||  ||   |||||||| ||||  | ||||||||||     ||||  |||||||| || ||||    
T  48606748 tatcatcaagtcattgaaccacacatcgttgatcttgttggtagcaattctttcccacgaacatataagattattttactagaatattgacagggtttga 48606847  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttatta 336  Q
    ||||| ||| |||||||||||||||| || |||||||||||||||||||||  ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  48606848 taactagtggacttccaacttttgttgattttggtaatagctttggtgcacttgctattgttgaagatccacaaattagaagttaaaatctgatttatta 48606947  T
Q  337 tgccatgttgtagaagtgattgta 360  Q
    |||||||||||||||| |||||||    
T  48606948 tgccatgttgtagaagggattgta 48606971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 45 - 214
Target Start/End: Original strand, 52753856 - 52754025
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||| |||||||||||||||||||||||   |||||| ||| |||||||||||||||| |||||||||||||||||| |||||||||||    
T  52753856 aattaggaggtaaataccctttccgagacctctttgcga---atgttcgaataatatcaacatcatcaaatgacttgaatatctcccgttcgatgtaaca 52753952  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatat---tcataattctttctcacgggcttataagatta 214  Q
    |||||||||||||||||||||||||||||||||||| |   | ||||||||||||||| ||||||||||||||    
T  52753953 tatcatcaagtcattgaaccacacatcgttgatcatgttggtaataattctttctcacaggcttataagatta 52754025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 25017525 - 25017392
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||| |||||||||| |||||||||||||| |||| |||| ||| |||||||||||||||||||| ||||||||||| |||||| ||||| |    
T  25017525 aattaggaggtatatgccctttctgagacctctttgcggtgaacgttcgaataatatcaacatcatcaagtgatttgaatatctctcgctcggtgtaaga 25017426  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatc 178  Q
    ||||||||||||||||||||||||||||||||||    
T  25017425 tatcatcaagtcattgaaccacacatcgttgatc 25017392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 26272965 - 26273097
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||| |||||| ||||||||||||||||| |||||||||||||||| ||| |||| |||||||||| ||||||||||||||||| |||||||||||||    
T  26272965 aattagtaggtaattgccctttccgagacctgtttgcgatgaatgttcgaataatattaacatcatcacgtgacttgaatatctcctgctcgatgtaaca 26273064  T
Q  145 tatcatcaagtcattgaaccacacatcgttgat 177  Q
    ||||||||| ||||||||| |||||||||||||    
T  26273065 tatcatcaaatcattgaacaacacatcgttgat 26273097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 246 - 362
Target Start/End: Original strand, 52754029 - 52754145
Alignment:
Q  246 tacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttattatgccatgtt 345  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  52754029 tactttcaacttttgttaatgttgataatagctttggtgcacccgctattgttgaagatccacaaattagaagttaaaatctgattaattatgccatgtt 52754128  T
Q  346 gtagaagtgattgtaag 362  Q
    |||||||||||||||||    
T  52754129 gtagaagtgattgtaag 52754145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 35949014 - 35949128
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||| |||||||||||||||||| || ||||||||| ||| | ||||||||||||||||||||||||||||||||||||| |||||||    
T  35949014 aattaggaggtaaatgtcctttccgagacctcttttcggtgaatgttcgaataacatcaacatcatcaagtgacttgaatatctcccgctcggtgtaaca 35949113  T
Q  145 tatcatcaagtcatt 159  Q
    |||||||||||||||    
T  35949114 tatcatcaagtcatt 35949128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 40864755 - 40864888
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||||||||||  | ||||||||||| ||||||||| ||| |||||||||| ||||||||||||||||||| | || ||| ||||| |    
T  40864755 aattaggaggtaaatgccctttctaaaacctctttgcggtgaatgttcgaataatatcaacattatcaagtgacttgaatatccctcgttcggtgtaaga 40864854  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatc 178  Q
    ||||||||||||||||||||||||||||||||||    
T  40864855 tatcatcaagtcattgaaccacacatcgttgatc 40864888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 21973824 - 21973945
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||| ||| |||||||  ||||||||||| |||||||||||||||||  |||||||    
T  21973824 aattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtgatttgaatatctcccgctcagtgtaaca 21973923  T
Q  145 tatcatcaagtcattgaaccac 166  Q
    ||||||||| ||||| ||||||    
T  21973924 tatcatcaaatcatttaaccac 21973945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 17127539 - 17127445
Alignment:
Q  84 tgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccacacatcgttgatc 178  Q
    ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||    
T  17127539 tgaatgttcgaataatatcaacatcatcaagcgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatc 17127445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 32379892 - 32380021
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||| | ||| ||| ||||||||||| | ||||||| ||| |||||||||||||||||||| |||||||||||||| | | |||||||    
T  32379892 aattaggaggtaaatgtcattttcgatacctctttgcg-taaatgttcgaataatatcaacatcatcaagtgaattgaatatctcccgtttggtgtaaca 32379990  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatc 178  Q
    |   ||||||||||||||||||||||||||||||    
T  32379991 t---atcaagtcattgaaccacacatcgttgatc 32380021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 212 - 333
Target Start/End: Complemental strand, 30054829 - 30054708
Alignment:
Q  212 ttactagcttattgacatggcttgataacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaa 311  Q
    ||||||||||||||  | ||||||| |||  ||| |||||||||||||||| ||||||||||| | |||  |||||||||||| |||||||||||| |||    
T  30054829 ttactagcttattggtagggcttgacaaccggtggacttccaacttttgttgatgttggtaatggttttaatgcacccgctattgttgaagatccataaa 30054730  T
Q  312 ttaaaagttaaaatctgattta 333  Q
    ||| || |||||||||||||||    
T  30054729 ttagaaattaaaatctgattta 30054708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 30054960 - 30054847
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||| | |||  || |||||||||||  ||| |||| ||| || |||| || |||||||||||||||||||||||||||| |||||||    
T  30054960 aattaggaggtaaatgtcatttatgatacctctttgcggagaaggttcgaataatgtcaatatgatcaagtgacttgaatatctcccgctcggtgtaaca 30054861  T
Q  145 tatcatcaagtcat 158  Q
    |||||| |||||||    
T  30054860 tatcattaagtcat 30054847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 30054703 - 30054660
Alignment:
Q  319 ttaaaatctgatttattatgccatgttgtagaagtgattgtaag 362  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  30054703 ttaaaatctgatttattatgccatgttgtagaagtaattgtaag 30054660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 17874917 - 17874845
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtga 117  Q
    |||||| |||||||||  |||| ||||||||||||||| ||||||||  ||| |||||||||||||| |||||    
T  17874917 aattagaaggtaaatgatcttttcgagacctctttgcggtgaatgtttgaataatatcaacatcatccagtga 17874845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 28463234 - 28463197
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcg 82  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  28463234 aattaggaggtgaatgccctttccaagacctctttgcg 28463197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 45 - 362
Target Start/End: Complemental strand, 31944755 - 31944432
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| | |||| |||||||    
T  31944755 aattaggaggtaaatgccctttccgagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcacactcggtgtaaca 31944656  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatattcataa---ttctttctcacgggcttataagatta-----ctagcttattgacatggcttga 236  Q
    |||||||||||||||||||||||||||||||||| | ||  |||   |||||||||||| |||||||||||||     ||||||||||| || |||||||    
T  31944655 tatcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacgagcttataagattattttactagcttattggcagggcttga 31944556  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttatta 336  Q
    ||||| ||| |||||||||||||||| |||||||||||||||||  |||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  31944555 taactggtggacttccaacttttgttaatgttggtaatagctttcatgcacccgctattgttgaagatccacaaattagaagttaaaatctgatttatta 31944456  T
Q  337 tgccatgttgtagaagtgattgtaag 362  Q
    |||||  |||||||||||||||||||    
T  31944455 tgcca--ttgtagaagtgattgtaag 31944432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 45 - 180
Target Start/End: Original strand, 53693070 - 53693205
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||||||||||    
T  53693070 aattaagaggtgaatgccctttccgagacctctttgcgatgaatgttcgaataatatcaacatcatcaagtgccttgattatctcccgctcgatgtaaca 53693169  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcat 180  Q
    ||||||||||||||||||||||||| ||||||||||    
T  53693170 tatcatcaagtcattgaaccacacaccgttgatcat 53693205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 27365013 - 27364889
Alignment:
Q  54 gtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaacatatcatcaa 153  Q
    ||||||||||||| |||||||||||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27365013 gtaaatgcccttttcgagacctcttttcggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaa 27364914  T
Q  154 gtcattgaaccacacatcgttgatc 178  Q
    |||||| |||||||||  |||||||    
T  27364913 gtcatttaaccacacactgttgatc 27364889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 12211262 - 12211395
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||| | ||| ||||||||| |||  |||||||||| ||| |||||||||||||||| |||||||||||||||| | ||| |||||||    
T  12211262 aattaggaggtaaatgtcattttcgagacctcattgaaatgaatgttcgaataatatcaacatcatcaaatgacttgaatatctcctgttcggtgtaaca 12211361  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatc 178  Q
    ||||||||||||||||||||||||||||||||||    
T  12211362 tatcatcaagtcattgaaccacacatcgttgatc 12211395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 4325550 - 4325418
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||| ||||||||| ||||| | | |||  ||||||||||||| |||||||||||||||||||  |||| |||||||| |||| |||||||    
T  4325550 aattaggaggtaattgccctttctgagacat-tctgctgtgaatgttcaaataatatcaacatcatcaagtgggttgattatctcccactcggtgtaaca 4325452  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatc 178  Q
    ||||||||||||||||||||||||||||||||||    
T  4325451 tatcatcaagtcattgaaccacacatcgttgatc 4325418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 247 - 362
Target Start/End: Original strand, 24104677 - 24104793
Alignment:
Q  247 acttccaacttttgttcatgttggtaatagctttggtgcaccc-gctatcgttgaagatccacaaattaaaagttaaaatctgatttattatgccatgtt 345  Q
    |||| ||||||||||| |||||||| ||||||||||||||||| |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||    
T  24104677 actttcaacttttgttgatgttggtgatagctttggtgcaccctgctatcgttgcatatccacaaattagaagttaaaatctgatttattatgccatgtt 24104776  T
Q  346 gtagaagtgattgtaag 362  Q
    |||||| | ||||||||    
T  24104777 gtagaaataattgtaag 24104793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 3074508 - 3074414
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatg 139  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  3074508 aattaggagataaatgcccttcctgagacctctttgcgatgaatgttcaaataatatcaacatcatcaagtgacttgattatctcccgctcgatg 3074414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 55464735 - 55464829
Alignment:
Q  84 tgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccacacatcgttgatc 178  Q
    ||||||||| ||| ||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||| |||||||||| |||||||    
T  55464735 tgaatgttcgaataatatcaacatcatcaagtgacttgattttctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatc 55464829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 42843849 - 42843713
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctc---tttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgta 141  Q
    |||||||| || ||||||||  ||||||||||   |||| | ||||||||| | | |||||||||||||||||||||||||||||||| | ||| || ||    
T  42843849 aattaggatgtcaatgccctccccgagacctcctctttgtggtgaatgttcgattaatatcaacatcatcaagtgacttgaatatctctcactcaatata 42843750  T
Q  142 acatatcatcaagtcattgaaccacacatcgttgatc 178  Q
    |||||||||||| ||||| |||||||||| |||||||    
T  42843749 acatatcatcaactcattaaaccacacattgttgatc 42843713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 51379587 - 51379514
Alignment:
Q  230 ggcttgataacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaaga 303  Q
    ||||||| |||  ||| |||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  51379587 ggcttgacaaccggtggacttccaacttttgttgatgttggtaatagctttggtgcacctgctattgttgaaga 51379514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 17359322 - 17359270
Alignment:
Q  310 aattaaaagttaaaatctgatttattatgccatgttgtagaagtgattgtaag 362  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  17359322 aattagaagttaaaatctgatttattatgccctgttgtagaagtgattgtaag 17359270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 8897962 - 8898037
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgactt 120  Q
    |||||||||||||||   ||||| |||||||||||||| |||||| || ||| |||||||||||||| ||||||||    
T  8897962 aattaggaggtaaatagtctttctgagacctctttgcggtgaatgctcgaataatatcaacatcatccagtgactt 8898037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 1147638 - 1147591
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttc 92  Q
    ||||||||||||||| | ||||||||||||||||||| ||||||||||    
T  1147638 aattaggaggtaaatactctttccgagacctctttgcaatgaatgttc 1147591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 1147581 - 1147523
Alignment:
Q  115 tgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccacacatcgt 173  Q
    |||||||||||||| || ||||||||||| ||||||||| ||||| ||||| |||||||    
T  1147581 tgacttgaatatcttccactcgatgtaacctatcatcaaatcattaaaccaaacatcgt 1147523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 10632680 - 10632757
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatg--aatgttcaaattatatcaacatcatcaagtgactt 120  Q
    ||||||||||||||||   |||||||||| |||||||| ||  ||||||| ||| | || ||||||||||||||||||    
T  10632680 aattaggaggtaaatgatatttccgagacttctttgcggtgaaaatgttcgaataacattaacatcatcaagtgactt 10632757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 45 - 362
Target Start/End: Complemental strand, 9230540 - 9230215
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||| |||||||| |||||||||||| ||||||||    
T  9230540 aattaggaggtaaatgcccttttcgatacctctttgcgatgaatgttcgaataatatcaacatcatcaaatgacttgagtatctcccgctctatgtaaca 9230441  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatat---tcataattctttctcacgggcttataaga-----ttactagcttattgacatggcttga 236  Q
    |||||||||||||||||||||||||||||||| ||| |   | | |||| ||||| ||||||||||||||     |||||||||||||||||||||||||    
T  9230440 tatcatcaagtcattgaaccacacatcgttgaccatgttggtaacaattttttctaacgggcttataagattattttactagcttattgacatggcttga 9230341  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttatta 336  Q
    |||||  |||| |||||||||||||| |||||| |||||||||||||||||||||||| |||||| ||| |||||| | | |||||||||||||| ||||    
T  9230340 taactgatgtatttccaacttttgttgatgttgataatagctttggtgcacccgctattgttgaatatcgacaaataagatgttaaaatctgattaatta 9230241  T
Q  337 tgccatgttgtagaagtgattgtaag 362  Q
    || |||||||||||||||||||||||    
T  9230240 tgtcatgttgtagaagtgattgtaag 9230215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 77 - 384
Target Start/End: Complemental strand, 43728103 - 43727788
Alignment:
Q  77 tttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccacacatcgttga 176  Q
    |||||||||||||||  ||| |||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  43728103 tttgcgatgaatgtttgaataatatcaacatcatcaactgacttgaatatctcccgttcgatataacatatcatcaagtcattgaaccacacatcgttga 43728004  T
Q  177 tcatat---tcataattctttctcacgggcttataaga-----ttactagcttattgacatggcttgataacttgtgtacttccaacttttgttcatgtt 268  Q
    |||| |   | | ||||||||||||  |||||||||||     |||||||||||||||||||  ||||||||| |||||||||||||||||||| |||||    
T  43728003 tcatgttggtaacaattctttctcataggcttataagattattttactagcttattgacatgagttgataactggtgtacttccaacttttgttgatgtt 43727904  T
Q  269 ggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttattatgccatgttgtagaagtgattgtaagnnnnnn 368  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||||| |||||||||||||||||||||          
T  43727903 ggtaatagctttggtgcacccgctattgttgaagatccacgaattagaagttaaagtctgatttattatgccttgttgtagaagtgattgtaagtttttc 43727804  T
Q  369 natgtataaagtgatt 384  Q
     |||||||||||||||    
T  43727803 tatgtataaagtgatt 43727788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 45 - 362
Target Start/End: Original strand, 23179922 - 23180251
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||| |||||||||||||| ||||||||||||| ||||||||| ||| |||||||||| |||||||| |||||||||||| |||||| |||||||    
T  23179922 aattaggag-taaatgccctttccaagacctctttgcggtgaatgttcgaataatatcaacattatcaagtgccttgaatatctctcgctcggtgtaaca 23180020  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatat---tcataattctttctcacgggcttataaga-----ttactagcttattgacatggcttga 236  Q
    ||||||||||| |||||| ||||||||||||||| | |   | | |||| ||||||||| ||||||||||     |||||||||||||| ||  ||||||    
T  23180021 tatcatcaagttattgaaacacacatcgttgatcttgttggtaacaattatttctcacgagcttataagattattttactagcttattggcaaagcttga 23180120  T
Q  237 taac---ttgtgtacttccaacttttgttcatgttggtaatagcttt--ggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatt 331  Q
    ||||   | | |||||||||||||||||| |||||||||||||||||  | | | |    | |  ||| ||||||||||||||||| ||||| ||| |||    
T  23180121 taacccgtggagtacttccaacttttgttgatgttggtaatagctttaagatacccattttgttattgtagatccacaaattaaaaattaaattctaatt 23180220  T
Q  332 tattatgccatgttgtagaagtgattgtaag 362  Q
    ||||||||  |||||||||||||||||||||    
T  23180221 tattatgctctgttgtagaagtgattgtaag 23180251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 26493750 - 26493875
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||     
T  26493750 aattaggaggtaaatgccctttccgagacctctttacggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtgtaacg 26493849  T
Q  145 tatcatcaagtcattgaaccacacat 170  Q
    ||||||||||||||| ||||||||||    
T  26493850 tatcatcaagtcatttaaccacacat 26493875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 27387342 - 27387475
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcga-tgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaac 143  Q
    ||||||||||||||||| ||||||| ||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  27387342 aattaggaggtaaatgctctttccgcgacctcttt-cgagtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtgtaac 27387440  T
Q  144 atatcatcaagtcattgaaccacacatcgttgatc 178  Q
    |||||||||||||||| |||||||||| |||||||    
T  27387441 atatcatcaagtcattcaaccacacattgttgatc 27387475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 19400117 - 19399984
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcga-tgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaac 143  Q
    ||||||||||||||| ||||||||| ||||||||| ||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  19400117 aattaggaggtaaataccctttccgcgacctcttt-cgagtgaatgttcgaataatatcaacatcatcaagcgacttgaatatctcccgctcggtgtaac 19400019  T
Q  144 atatcatcaagtcattgaaccacacatcgttgatc 178  Q
    |||||||||||||||| |||||||||| |||||||    
T  19400018 atatcatcaagtcattcaaccacacattgttgatc 19399984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 45197782 - 45197650
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||| |||||||||||  |||||||||||||| | ||||||||| ||  ||||||||||| ||||||||||||||||||||| |||||||| || |    
T  45197782 aattaggatgtaaatgccctccccgagacctctttgtggtgaatgttcgaacaatatcaacatcgtcaagtgacttgaatatctcctgctcgatg-aata 45197684  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatc 178  Q
    |||||||||||||||||||||||||| |||||||    
T  45197683 tatcatcaagtcattgaaccacacattgttgatc 45197650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 42 - 174
Target Start/End: Complemental strand, 18375546 - 18375416
Alignment:
Q  42 tcgaattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgta 141  Q
    ||||||||||| ||||||||||||| |||||||| || || |||||||||| ||| |||||||||| ||| ||||| ||||||||||||||||| |||||    
T  18375546 tcgaattaggaagtaaatgcccttttcgagacct-ttcgc-atgaatgttcgaataatatcaacattatctagtgatttgaatatctcccgctccatgta 18375449  T
Q  142 acatatcatcaagtcattgaaccacacatcgtt 174  Q
    | |||||||||||||||||||||||||||||||    
T  18375448 atatatcatcaagtcattgaaccacacatcgtt 18375416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 38575325 - 38575457
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcga-tgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaac 143  Q
    ||||||||||||||||  ||||||| ||||||||| ||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  38575325 aattaggaggtaaatgttctttccgcgacctcttt-cgagtgaatgttcgaataatatcaacatcatcaagtgactttaatatctcccgctcggtgtaac 38575423  T
Q  144 atatcatcaagtcattgaaccacacatcgttgat 177  Q
    ||||||||||||| || |||||| ||| ||||||    
T  38575424 atatcatcaagtcgttcaaccacccattgttgat 38575457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 8638754 - 8638620
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacc-tctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaac 143  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||| ||| ||||| | |||||||| |||||||||||||||  | ||| | ||||    
T  8638754 aattaggaggtaaatgccctttccgagaccctctttgcgttgaatgttcgaataatatcgatatcatcaaatgacttgaatatctcttgttcggtataac 8638655  T
Q  144 atatcatcaagtcattgaaccacacatcgttgatc 178  Q
    |||||||||||| ||| |||||||| |||||||||    
T  8638654 atatcatcaagtaattaaaccacacgtcgttgatc 8638620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 25024547 - 25024455
Alignment:
Q  212 ttactagcttattgacatggcttgataacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagat 304  Q
    ||||||||||||| |||||| |||| || | ||| |||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||    
T  25024547 ttactagcttattaacatggattgacaattggtggacttccaacttttgttgatgctggtaatagctttggtgcatccgctattgttgaagat 25024455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 14088887 - 14088815
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtga 117  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||  ||| |||||| |||||||||||||    
T  14088887 aattaggaggtaaatgccttttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 14088815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 14398905 - 14398833
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtga 117  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||  ||| |||||| |||||||||||||    
T  14398905 aattaggaggtaaatgccttttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 14398833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 5287775 - 5287719
Alignment:
Q  298 tgaagatccacaaattaaaagttaaaatctgatttattatgccatgttgtagaagtg 354  Q
    ||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||    
T  5287775 tgaagatccacaaattagaagttaaaatctgatttattatgtcttgttgtagaagtg 5287719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 304
Target Start/End: Complemental strand, 5288060 - 5287940
Alignment:
Q  189 ttctttctcacgggcttataaga-----ttactagcttattgacatggcttgataacttgtgtacttccaacttttgttcatgttggtaatagctttggt 283  Q
    |||||||||||| |||| |||||     ||||||||||||||||| |  |||| |||  ||| |||||||||||||||| ||| ||||||||||||||||    
T  5288060 ttctttctcacgagcttgtaagattattttactagcttattgacaggatttgacaaccggtggacttccaacttttgttgatgatggtaatagctttggt 5287961  T
Q  284 gcacccgctatcgttgaagat 304  Q
     ||||||||||  ||||||||    
T  5287960 acacccgctatttttgaagat 5287940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 24276438 - 24276521
Alignment:
Q  212 ttactagcttattgacatgg-cttgataacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctat 294  Q
    ||||||||||||||| |  | ||||| |||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  24276438 ttactagcttattgatagagtcttgacaactggtggacttccaacttttgttgatgttggttatagctttggtgcacccgctat 24276521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 25024290 - 25024226
Alignment:
Q  298 tgaagatccacaaattaaaagttaaaatctgatttattatgccatgttgtagaagtgattgtaag 362  Q
    |||||||| |||||||| || ||||||| |||||||| ||||| |||||||||||||||||||||    
T  25024290 tgaagatctacaaattagaatttaaaatttgatttatcatgccttgttgtagaagtgattgtaag 25024226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 25024662 - 25024596
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatc 111  Q
    ||||||||||||||||||||||| |||||||||||| | ||||||| | ||   |||||||||||||    
T  25024662 aattaggaggtaaatgccctttctgagacctctttgtggtgaatgtccgaaacttatcaacatcatc 25024596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 23804627 - 23804667
Alignment:
Q  138 tgtaacatatcatcaagtcattgaaccacacatcgttgatc 178  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  23804627 tgtaatatatcaacaagtcattgaaccacacatcgttgatc 23804667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 25491674 - 25491742
Alignment:
Q  49 aggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtga 117  Q
    |||| ||||||||| |||  ||||||||||| |  ||||||||| ||| ||||||||||||||||||||    
T  25491674 aggaagtaaatgccttttttgagacctctttacagtgaatgttcgaataatatcaacatcatcaagtga 25491742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 9557827 - 9557784
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaat 88  Q
    ||||||||||||||| ||||||| |||||||||||||| |||||    
T  9557827 aattaggaggtaaatcccctttcagagacctctttgcggtgaat 9557784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 45 - 357
Target Start/End: Complemental strand, 3055621 - 3055300
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||||| |||  |||||||| |||||  |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  3055621 aattaggaggtaaatgccatttatgagacctcattgcgcggaatgttcgaataatatcaacatcatcaaatgacttgaatatctcccgctcgatgtaaca 3055522  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatat---tcataattctttctcacgggcttataaga-----ttactagcttattgacatggcttga 236  Q
    |||||||||||||||||||||||||||||||||||| |   | | |||||||||||||||||||||||||     |||||||||||||||||||||||||    
T  3055521 tatcatcaagtcattgaaccacacatcgttgatcatgttggtaacaattctttctcacgggcttataagattattttactagcttattgacatggcttga 3055422  T
Q  237 taacttgtgtacttccaac-ttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttatt 335  Q
    ||||| || |||||| | |  |||||| |||||| |||||||||||||||||||||||| |||||||||||| |||||| |||||||||||| ||| |||    
T  3055421 taactggtttacttctaccaatttgttgatgttgataatagctttggtgcacccgctattgttgaagatccataaattagaagttaaaatctcattaatt 3055322  T
Q  336 atgccatgttgtagaagtgatt 357  Q
    ||| ||| ||||||||||||||    
T  3055321 atgtcatattgtagaagtgatt 3055300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 45 - 362
Target Start/End: Complemental strand, 8785921 - 8785597
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||   |||||| |||||||| |||||| ||||||||| ||| ||||||| |||||||| ||| |||||||||||||||| ||||||| |    
T  8785921 aattaggaggtaagaacccttttcgagacctatttgcggtgaatgttcgaataatatcaatatcatcaactgaattgaatatctcccgcttgatgtaata 8785822  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatattcataa---ttctttctcacgggcttataagatta-----ctagcttattgacatggcttga 236  Q
    ||| |||||||||||||||||||||||||||||| | ||  |||   ||||||||||  | ||||||||||||     |||||||||| ||  || ||||    
T  8785821 tattatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcattg-cttataagattattttactagcttattaacggggtttga 8785723  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttatta 336  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||    
T  8785722 taactagtggacttccaacttttgttgatgttggtaatagctttggtgcacccgctattgttgaagatccacaaattagaagtttaaatctgatttatta 8785623  T
Q  337 tgccatgttgtagaagtgattgtaag 362  Q
    || |||| ||||||||||||||||||    
T  8785622 tgacatgctgtagaagtgattgtaag 8785597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 45 - 361
Target Start/End: Original strand, 27168839 - 27169155
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||||||||||  |||||||| || || ||||||||| ||| |||||||||| |||||||||||||||||||||||||||| |||||||    
T  27168839 aattaggaggtaaatgccctttatgagacctcatttcggtgaatgttcgaataatatcaacattatcaagtgacttgaatatctcccgctcggtgtaaca 27168938  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatattcataa---ttctttctcacgggcttataagatta-----ctagcttattgacatggcttga 236  Q
    ||| ||        |||||||||||||||||||| | ||  |||   || ||||||| |||||||||||||||     |||||||||||||| | |||||    
T  27168939 tattat--------tgaaccacacatcgttgatcttgtttgtaacaattatttctcatgggcttataagattattttactagcttattgacaagacttga 27169030  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttatta 336  Q
    ||||| ||| ||||||| |||||||| |||||||||||||||||||| ||||||||||  |||||||| ||||||||| |||||||||||||||||||||    
T  27169031 taactggtggacttccatcttttgttgatgttggtaatagctttggtacacccgctattattgaagattcacaaattagaagttaaaatctgatttatta 27169130  T
Q  337 tgccatgttgtagaagtgattgtaa 361  Q
    |||| ||||||||||||||||||||    
T  27169131 tgccctgttgtagaagtgattgtaa 27169155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 45 - 183
Target Start/End: Complemental strand, 1280517 - 1280379
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  1280517 aattaggaggtaaatgccttttccgagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtgtaaca 1280418  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatatt 183  Q
    ||||||||| |||||||||||||||| ||||||| ||||    
T  1280417 tatcatcaaatcattgaaccacacattgttgatcttatt 1280379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 45 - 304
Target Start/End: Complemental strand, 11852854 - 11852587
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||| |||||||| | |||||  ||||||||||| | | ||||||| ||| |||||||||||||||||||| || ||||||||||| ||| |||||||    
T  11852854 aattagaaggtaaatactctttcttagacctctttgtgttaaatgttcgaataatatcaacatcatcaagtgagttaaatatctcccgttcggtgtaaca 11852755  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatat---tcataattctttctcacgggcttataaga-----ttactagcttattgacatggcttga 236  Q
    ||||||||||||||||||||||||||| || ||| | |   | ||||||||||||||||| |||||||||     ||||||||||||||||| | |||||    
T  11852754 tatcatcaagtcattgaaccacacatctttcatcttgttggtaataattctttctcacggacttataagattattttactagcttattgacaggacttga 11852655  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagat 304  Q
     ||||  || | ||   ||||||||| ||||| ||||||| |||||||||||| |||| |||||||||    
T  11852654 caactgatggatttttcacttttgttgatgttagtaatagttttggtgcacccactattgttgaagat 11852587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 203989 - 203875
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||| |||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  203989 aattaggaggtaaatgtcctttccgagacctctttccggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtgtaaca 203890  T
Q  145 tatcatcaagtcatt 159  Q
    |||||||||||||||    
T  203889 tatcatcaagtcatt 203875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 45 - 262
Target Start/End: Original strand, 23244606 - 23244831
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||| ||||| |||||||||| |||||||| ||||| | ||||||||||| |||||||||||||||||||||| ||||| || ||||||||  |||||    
T  23244606 aattagcaggtacatgccctttctgagacctcgttgcggttaatgttcaaataatatcaacatcatcaagtgactagaataacttccgctcgacataaca 23244705  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatat---tcataattctttctcacgggcttataaga-----ttactagcttattgacatggcttga 236  Q
    ||||||||||||||||||| |||||||||||||| | |   | | ||||||||||||  |||||||||||     ||||||||||||||||| |||||||    
T  23244706 tatcatcaagtcattgaacgacacatcgttgatcttgttggtaacaattctttctcattggcttataagattattttactagcttattgacagggcttga 23244805  T
Q  237 taacttgtgtacttccaacttttgtt 262  Q
     |||   || | ||||||||||||||    
T  23244806 caacgaatggaattccaacttttgtt 23244831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 26540691 - 26540812
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||||||||||| ||||  |||||||| ||||||||| ||| |||||||  ||||||||||| |||||||||||||||||| |||||||    
T  26540691 aattaggaggtaaatgccctttctgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtgatttgaatatctcccgctcggtgtaaca 26540790  T
Q  145 tatcatcaagtcattgaaccac 166  Q
    ||||||||| ||||| ||||||    
T  26540791 tatcatcaaatcatttaaccac 26540812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 45 - 165
Target Start/End: Complemental strand, 22542025 - 22541905
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatg-aatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaac 143  Q
    ||||| ||||||||||||||||||| ||||||||| ||| | ||||||| ||| |||| ||||||||| |||||||||||||||| ||| ||||||||||    
T  22542025 aattatgaggtaaatgccctttccgcgacctcttt-cgagggaatgttcgaataatattaacatcatcgagtgacttgaatatcttccgttcgatgtaac 22541927  T
Q  144 atatcatcaagtcattgaacca 165  Q
    |||||||||||||||| |||||    
T  22541926 atatcatcaagtcattcaacca 22541905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 22712935 - 22713048
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||||| ||||| |||||||||||||| ||||||||  ||| ||||||||||||||||||||| |||||||| ||||||        ||    
T  22712935 aattaggaggtaaatgctctttctgagacctctttgcggtgaatgtttgaataatatcaacatcatcaagtgacatgaatatcccccgct--------ca 22713026  T
Q  145 tatcatcaagtcattgaaccac 166  Q
    ||||||||||||||||||||||    
T  22713027 tatcatcaagtcattgaaccac 22713048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 2229054 - 2228964
Alignment:
Q  45 aattaggaggtaaatgccctttccgaga-cctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctc 135  Q
    ||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||||||| ||||||    
T  2229054 aattaggaggtaaatgccctt-cctagaacctctttgcgatgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgctc 2228964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 19518978 - 19519053
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgactt 120  Q
    ||||||| |||||||| ||||||| | ||||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  19518978 aattaggtggtaaatgacctttccaatacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgactt 19519053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 11849766 - 11849702
Alignment:
Q  298 tgaagatccacaaattaaaagttaaaatctgatttattatgccatgttgtagaagtgattgtaag 362  Q
    |||||| |||||||||| |||||||||| ||| |||||||||| |||||||||||||||||||||    
T  11849766 tgaagacccacaaattagaagttaaaatttgagttattatgccctgttgtagaagtgattgtaag 11849702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 45 - 362
Target Start/End: Complemental strand, 17879 - 17554
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||| |||||| |||||| |||||||||||||| ||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||||     
T  17879 aattaggagttaaatgtcctttcggagacctctttgcggtgaatgttcgaataatatcaacatcagcaagtgacttaaatatctcccgctcgatgtaacg 17780  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatattcat---aattctttctcacgggcttataaga-----ttactagcttattgacatggcttga 236  Q
    |||||||||||||||||||||||||||||||||| | || ||   |||| ||||| | | ||||||||||     |||||||||||||||||  | ||||    
T  17779 tatcatcaagtcattgaaccacacatcgttgatcttgttgataacaattatttctaatgagcttataagattattttactagcttattgacagagattga 17680  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttatta 336  Q
    ||||| ||| |||||||||||||||| ||||||||||||| |||||||||||| || | ||||||||||||||||||| ||| ||||||| |||||||||    
T  17679 taactggtggacttccaacttttgttgatgttggtaatagttttggtgcacccacttttgttgaagatccacaaattagaagctaaaatcggatttatta 17580  T
Q  337 tgccatgttgtagaagtgattgtaag 362  Q
     |||||||||||||||||||||||||    
T  17579 cgccatgttgtagaagtgattgtaag 17554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 45 - 357
Target Start/End: Complemental strand, 12539712 - 12539393
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||||  |||||| ||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||   ||||| | |||||    
T  12539712 aattaggaggtaaatgttctttccaagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatcttatgctcggt-taaca 12539614  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatattcataa---ttctttctcacgggcttataagatt-----actagcttattgacatggcttga 236  Q
    |||||||||||||||||||||| ||| ||||||| | ||  |||   |||||||||||||||||||||||||     |||||||||||| || |||||||    
T  12539613 tatcatcaagtcattgaaccacgcattgttgatcttgttggtaacaattctttctcacgggcttataagattcttttactagcttattggcaaggcttga 12539514  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttatta 336  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| |||||| ||| |||||||||||||||||    
T  12539513 taactggtggacttccaacttttgttgatgttggtaatagctttggtgcacccgctattgttaaagatccaaaaattagaagataaaatctgatttatta 12539414  T
Q  337 tgccatgttgtagaagtgatt 357  Q
    |||| ||||||| ||||||||    
T  12539413 tgccgtgttgtataagtgatt 12539393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 45 - 331
Target Start/End: Original strand, 34317509 - 34317797
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||||| ||||  |||||||||||||| |||       ||  ||||||||||||| ||||||||||||||||||   |||| |||||||    
T  34317509 aattaggaggtaaatgctctttttgagacctctttgcggtgag------aacaatatcaacatcatgaagtgacttgaatatctcttactcggtgtaaca 34317602  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatattcataa---ttctttctcacgggcttataagatt-----actagcttattgacatggcttga 236  Q
    ||||||||||||||||||||||||||| |||||| | ||  |||   |||||||||| ||  ||||||||||     |||||||||||||||  ||||||    
T  34317603 tatcatcaagtcattgaaccacacatcattgatcttgttggtaacaattctttctcatggatttataagattcttttactagcttattgacaaagcttga 34317702  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatt 331  Q
    ||||| ||| |||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  34317703 taactggtggacttccaacttttgttgatgttggtaatagctttggttcacccgctattgttgaagatccacaaattagaagttaaaatctgatt 34317797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 45 - 174
Target Start/End: Original strand, 19951867 - 19951996
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |||||  ||| |||    
T  19951867 aattagaaggtaaatgcccttttcgagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctctcgctcagtgtgaca 19951966  T
Q  145 tatcatcaagtcattgaaccacacatcgtt 174  Q
    |||| |||||||||||||||| ||||||||    
T  19951967 tatcgtcaagtcattgaaccatacatcgtt 19951996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 35649696 - 35649829
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||| ||||||| ||||| ||||| ||||||||  ||||||||  ||| |||||||||||||||| |||||||||||||||||||||| |||||||    
T  35649696 aattaggaagtaaatgtccttttcgagatctctttgcagtgaatgtttcaataatatcaacatcatcaaatgacttgaatatctcccgctcggtgtaaca 35649795  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatc 178  Q
    ||||||||||||||||||| ||||||||||||||    
T  35649796 tatcatcaagtcattgaacaacacatcgttgatc 35649829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 45 - 165
Target Start/End: Complemental strand, 22483688 - 22483568
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||| ||| |||||||  ||||||||||| |||||||||||||||||| |||||||    
T  22483688 aattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtgatttgaatatctcccgctcggtgtaaca 22483589  T
Q  145 tatcatcaagtcattgaacca 165  Q
    ||||||||||||||| |||||    
T  22483588 tatcatcaagtcatttaacca 22483568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 33453224 - 33453357
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgt-aac 143  Q
    ||||||||||||||||| ||||| || ||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||| ||| |||    
T  33453224 aattaggaggtaaatgctctttctgatacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgacttaaatatctcccgctcggtgtaaac 33453323  T
Q  144 atatcatcaagtcattgaaccacacatcgttgatc 178  Q
    |||| || ||||||||| |||||||||||||||||    
T  33453324 atatgatgaagtcattg-accacacatcgttgatc 33453357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 34526491 - 34526370
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||| ||| |||||||  ||||||||||| |||||||||||||||||| |||||||    
T  34526491 aattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtgatttgaatatctcccgctcggtgtaaca 34526392  T
Q  145 tatcatcaagtcattgaaccac 166  Q
    ||||||||| ||||| ||||||    
T  34526391 tatcatcaaatcatttaaccac 34526370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 22464809 - 22464688
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||||||||| |||||  |||||||| ||||||||  ||| |||||||  ||||||||||| |||||||||||||||||| |||||||    
T  22464809 aattaggaggtaaatgcccttttcgagatttctttgcggtgaatgtttgaataatatcaatgtcatcaagtgatttgaatatctcccgctcggtgtaaca 22464710  T
Q  145 tatcatcaagtcattgaaccac 166  Q
    ||||||||| ||||| ||||||    
T  22464709 tatcatcaaatcatttaaccac 22464688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 13308840 - 13308745
Alignment:
Q  60 gccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaacatatcatcaagt 155  Q
    ||||||||||||||||||||  | ||||||||| ||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  13308840 gccctttccgagacctctttatggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctctcgctcggtgtaacatatcatcaagt 13308745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 34907723 - 34907624
Alignment:
Q  46 attaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaacat 145  Q
    ||||||||||||||||||||| ||| || ||| | |||||||||||  ||||||||||||| ||||||||||| ||| |||||| || ||| ||||||||    
T  34907723 attaggaggtaaatgcccttttcgaaacttctctccgatgaatgtttgaattatatcaacaccatcaagtgacctgagtatctctcgttcggtgtaacat 34907624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 18425997 - 18426072
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgactt 120  Q
    |||||||||||||||  | |||  ||||||||||| || ||||||||| ||| |||||||||| ||||||||||||    
T  18425997 aattaggaggtaaataacatttttgagacctctttacggtgaatgttcgaataatatcaacattatcaagtgactt 18426072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 34318088 - 34318122
Alignment:
Q  327 tgatttattatgccatgttgtagaagtgattgtaa 361  Q
    |||||||||||||| ||||||||||||||||||||    
T  34318088 tgatttattatgccctgttgtagaagtgattgtaa 34318122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 45121371 - 45121334
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcg 82  Q
    |||||||||||||||| | |||||||||||||||||||    
T  45121371 aattaggaggtaaatgtcttttccgagacctctttgcg 45121334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 26656377 - 26656452
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaac-atcatcaagtgactt 120  Q
    |||||||||||||||| || |||  ||| ||||||||| ||||||||| ||| |||||||| ||| |||||||||||    
T  26656377 aattaggaggtaaatgacc-ttctaagatctctttgcggtgaatgttcgaataatatcaacaatcgtcaagtgactt 26656452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 4e-85; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 45 - 362
Target Start/End: Original strand, 12180561 - 12180886
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||| |||||||||||||| |||||||||||||||| ||||||||| ||| ||||||||| ||||||||||||||||| |||||| |||| |||||||    
T  12180561 aattagaaggtaaatgcccttcccgagacctctttgcggtgaatgttcgaataatatcaacaacatcaagtgacttgaatttctcccactcggtgtaaca 12180660  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatat---tcataattctttctcacgggcttataaga-----ttactagcttattgacatggcttga 236  Q
    |||||||||||||||||||||||||  ||||||| | |   | | |||| ||||||||||||||||||||     |||| |||||||||||| |||||||    
T  12180661 tatcatcaagtcattgaaccacacaatgttgatcttgttggtaacaattttttctcacgggcttataagattattttaccagcttattgacagggcttga 12180760  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttatta 336  Q
    |||||  || |||| ||||||||||| ||||| |||||| |||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||    
T  12180761 taactgatggactttcaacttttgttgatgtttgtaataactttggcgcacccgctattgttgaagatccacaaattagaagttaaaatctgattcatta 12180860  T
Q  337 tgccatgttgtagaagtgattgtaag 362  Q
    |||  || ||||||| ||||||||||    
T  12180861 tgctttgatgtagaaatgattgtaag 12180886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 45 - 389
Target Start/End: Complemental strand, 11971098 - 11970747
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||||||||||| ||||||||||| || |||||||||  |  ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  11971098 aattaggaggtaaatgccctttctgagacctcttt-cggtgaatgttcgcaaaatatcaacatcatcaagtgacttgaatatcttccgctcggtgtaaca 11971000  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatat---tcataattctttctcacgggcttataaga-----ttactagcttattgacatggcttga 236  Q
    ||| |||||||||||||||||||||||||||||| |||   | | |||||||||||||   ||||||| |     ||||||| |||| ||   || ||||    
T  11970999 tatgatcaagtcattgaaccacacatcgttgatcttattggtaacaattctttctcacatacttataaaattattttactagattatagatggggtttga 11970900  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttatta 336  Q
     |||| ||| |||||  ||||||| | |||||||||||||||||| ||||||||||||  ||||||||| | |||||| || ||||||| ||||||||||    
T  11970899 caactagtggacttcatacttttgctgatgttggtaatagctttgctgcacccgctatttttgaagatctagaaattagaaattaaaatttgatttatta 11970800  T
Q  337 tgccatgttgtagaagtgattgtaagnnnnnnnatgtataaagtgattgtaag 389  Q
    |||| |||||||||||||||||||||       |||||| |||||||||||||    
T  11970799 tgccctgttgtagaagtgattgtaagtttttttatgtatgaagtgattgtaag 11970747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 25599294 - 25599159
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatga---atgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgta 141  Q
    |||||||| |||||||||||||||||||||||||||||||||   |||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||    
T  25599294 aattaggacgtaaatgccctttccgagacctctttgcgatgatgaatgttcgaataatatcaacatcatcaagtgacttgattatctcccactcgatgta 25599195  T
Q  142 acatatcatcaagtcattgaaccacacatcgttgat 177  Q
    ||||| ||||||||||||||||| ||| ||||||||    
T  25599194 acataccatcaagtcattgaaccgcacgtcgttgat 25599159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 45 - 180
Target Start/End: Original strand, 32442010 - 32442142
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||| |||||||||||||||||||| ||||||||| ||||||||||| ||| ||||||||||||||||||||  | | ||||| |||||||||||||||    
T  32442010 aattaagaggtaaatgccctttccgatacctctttgggatgaatgttcgaataatatcaacatcatcaagtga--ttattatcttccgctcgatgtaaca 32442107  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcat 180  Q
    |||||| ||||||||||||||||||||||| |||||    
T  32442108 tatcat-aagtcattgaaccacacatcgttaatcat 32442142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 24074551 - 24074418
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgat-gaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaac 143  Q
    |||||||||||||||| | || ||||||||||||| || | |||||||| ||| |||||||||||||||||| ||||||||||||||| |||| ||||||    
T  24074551 aattaggaggtaaatgtcatt-ccgagacctctttccggttgaatgttcgaataatatcaacatcatcaagtaacttgaatatctccccctcggtgtaac 24074453  T
Q  144 atatcatcaagtcattgaaccacacatcgttgatc 178  Q
    ||||||||||||||||  ||||||||| |||||||    
T  24074452 atatcatcaagtcattttaccacacattgttgatc 24074418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 3051002 - 3050902
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||| ||||||||| ||||||||||||||||| || ||||||||  ||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  3051002 aattaggtggtaaatgctctttccgagacctctttccggtgaatgtttgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtgtaaca 3050903  T
Q  145 t 145  Q
    |    
T  3050902 t 3050902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 25340584 - 25340451
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||||| ||||| |||||||||||  | ||||||||| ||| ||||||||||||||||||||||| ||||||| || || | |||||||    
T  25340584 aattaggaggtaaatgcactttctgagacctctttatggtgaatgttcgaataatatcaacatcatcaagtgacttaaatatcttccactgggtgtaaca 25340485  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatc 178  Q
    ||||||||| ||| | || |||||||| ||||||    
T  25340484 tatcatcaaatcacttaatcacacatcattgatc 25340451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 30621311 - 30621226
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctccc 131  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| ||||||||    
T  30621311 aattaggaggtaaatgtcctttccgagacctcttt-cgatgaatgttcgaataatatcaacatcatcaagtgacttgattatctccc 30621226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 247 - 361
Target Start/End: Complemental strand, 25340408 - 25340298
Alignment:
Q  247 acttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttattatgccatgttg 346  Q
    |||| ||||||||||| |||||||||||| |||||||| ||||    | ||||||||||||| ||||| ||||||||||||||||||||||||  |||||    
T  25340408 actttcaacttttgttgatgttggtaataactttggtgaaccc----ttgttgaagatccacgaattagaagttaaaatctgatttattatgcgttgttg 25340313  T
Q  347 tagaagtgattgtaa 361  Q
    |||||||||||||||    
T  25340312 tagaagtgattgtaa 25340298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 8035704 - 8035770
Alignment:
Q  296 gttgaagatccacaaattaaaagttaaaatctgatttattatgccatgttgtagaagtgattgtaag 362  Q
    ||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||    
T  8035704 gttgaagatccacaaattagaagttaaaatatgatttattatgccctgttgtagaagtgattgtaag 8035770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 8035479 - 8035551
Alignment:
Q  232 cttgataacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagat 304  Q
    ||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||| ||||  |||||||||    
T  8035479 cttgacaactcgtggacttccaacttttgttgatgttggtaatagctttggtgcacctgctactgttgaagat 8035551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 1296644 - 1296557
Alignment:
Q  49 aggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcg 136  Q
    |||||||||||| ||||||||||||||||||    ||||| ||  ||| |||| || |||||||||||||||||||||||||||||||    
T  1296644 aggaggtaaatggcctttccgagacctctttattgtgaatatttgaataatattaatatcatcaagtgacttgaatatctcccgctcg 1296557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 45 - 362
Target Start/End: Original strand, 3856912 - 3857237
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||   ||||| |||||||||||||| ||||||||  ||| |||||||||||||||| ||||||||||||||||| |||   ||||||    
T  3856912 aattaggaggtaaattttctttctgagacctctttgcggtgaatgtttgaataatatcaacatcatcaaatgacttgaatatctcccactctgagtaaca 3857011  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatc---atattcataattctttctcacgggcttataagatta-----ctagcttattgacatggcttga 236  Q
    | ||||||||||||| ||||||||||||||||||   ||  | | |||| |||||||||||||||||||||||     |||||||||||||| |||||||    
T  3857012 tgtcatcaagtcatttaaccacacatcgttgatcttgatggtaacaattatttctcacgggcttataagattattttactagcttattgacagggcttga 3857111  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttatta 336  Q
    ||||| ||| |||||||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||||| |||||| |||||||||| ||||||||||    
T  3857112 taactggtggacttccaacttttgttgatgttcgtaatagctttggtgcacctgctattgttgaagatccaaaaattagaagttaaaatttgatttatta 3857211  T
Q  337 tgccatgttgtagaagtgattgtaag 362  Q
    || | | |||||||||||||||||||    
T  3857212 tgtcttattgtagaagtgattgtaag 3857237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 45 - 338
Target Start/End: Complemental strand, 51262118 - 51261817
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||||  |||| | |||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| |||||   |||||||    
T  51262118 aattaggaggtaaatgttcttttcaagacctctttacgatgaatgttcgaataatatcaacatcatcaagtgacttgaatatcttccgcttagtgtaaca 51262019  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatcatattcataa---ttctttctcacgggcttataagatta-----ctagcttattgacatggcttga 236  Q
    ||||||||| |||||| ||||||| ||||||||| | ||  |||   |||||| ||||| |||||| | ||||     |||||||||||||| || ||||    
T  51262018 tatcatcaattcattgtaccacacttcgttgatcttgttggtaacaattctttttcacgagcttattatattattttactagcttattgacagggtttga 51261919  T
Q  237 taacttgtgtacttccaacttttgttcatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttatta 336  Q
     |||| ||| |||||||||||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||||| ||||||| |||||||||||||    
T  51261918 caactggtggacttccaacttttgttgatgttggtaatagctttgatgcacctgctattgttgaagatccacaaattagaagttaagatctgatttatta 51261819  T
Q  337 tg 338  Q
    ||    
T  51261818 tg 51261817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 46 - 281
Target Start/End: Complemental strand, 15668111 - 15667868
Alignment:
Q  46 attaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaacat 145  Q
    ||||||||||||||||| ||||||| |||||||||   || |||||| ||| ||||||||||||||||||||||||||||||||||||||| | ||||||    
T  15668111 attaggaggtaaatgccttttccgatacctctttgttgtgcatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtataacat 15668012  T
Q  146 atcatcaagtcattgaaccacacatcgttgatcatat---tcataattctttctcacgggcttataaga-----ttactagcttattgacatggcttgat 237  Q
    |||||||||| ||||||||||||||| |||||| | |   | | |||||||||||| ||| ||||||||     ||||| ||||||||| | ||||||||    
T  15668011 atcatcaagttattgaaccacacatccttgatcttgttggtaacaattctttctcatgggtttataagattattttacttgcttattgatagggcttgat 15667912  T
Q  238 aacttgtgtacttccaacttttgttcatgttggtaatagctttg 281  Q
    |||| ||| |||||||||||||||| ||||||||||||| ||||    
T  15667911 aactagtggacttccaacttttgttgatgttggtaataggtttg 15667868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 31989168 - 31989035
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcga-tgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaac 143  Q
    ||||||||||||||||||||||||| ||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  31989168 aattaggaggtaaatgccctttccgcgacctcttt-cgagtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtgtaac 31989070  T
Q  144 atatcatcaagtcattgaaccacacatcgttgatc 178  Q
    |||||||||||||||| |||||||||| |||||||    
T  31989069 atatcatcaagtcattcaaccacacattgttgatc 31989035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 43137265 - 43137133
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||| || |||| |||||||||| |||  |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  43137265 aattaggaggtaaataccttttctgagacctctt-gcggcgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtgtaaca 43137167  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatc 178  Q
    ||||||||||||||||||||| ||||||||||||    
T  43137166 tatcatcaagtcattgaaccatacatcgttgatc 43137133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 53710537 - 53710404
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcga-tgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaac 143  Q
    ||||||||||||||||||||||||| ||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  53710537 aattaggaggtaaatgccctttccgtgacctcttt-cgagtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtgtaac 53710439  T
Q  144 atatcatcaagtcattgaaccacacatcgttgatc 178  Q
    | |||||||||||||| |||||  ||| |||||||    
T  53710438 agatcatcaagtcattcaaccatccattgttgatc 53710404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 24908429 - 24908562
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcga-tgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaac 143  Q
    ||||||||||||||| ||||||||| ||||||||| ||| ||||||||| ||| ||||||||||| ||||| ||||||||||||||| ||| | ||||||    
T  24908429 aattaggaggtaaataccctttccgcgacctcttt-cgagtgaatgttcgaataatatcaacatcttcaagcgacttgaatatctcctgcttggtgtaac 24908527  T
Q  144 atatcatcaagtcattgaaccacacatcgttgatc 178  Q
    |||||||||||||||| |||||||||| |||||||    
T  24908528 atatcatcaagtcattcaaccacacattgttgatc 24908562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 278 - 362
Target Start/End: Complemental strand, 55194947 - 55194863
Alignment:
Q  278 tttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttattatgccatgttgtagaagtgattgtaag 362  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  55194947 tttggtgcacccgctattgttgaagatccacaaattagaagttaaaatctgatttattatgccctgttgtagaagtgattgtaag 55194863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 37381905 - 37382038
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||| ||||| | ||||||||||||||||||  ||||||||| ||| |||| ||||||||||| |||||||||||||||  ||||  ||||| |    
T  37381905 aattaggaggcaaatgtcatttccgagacctctttgcagtgaatgttcgaataatataaacatcatcaaatgacttgaatatctcatgctcagtgtaata 37382004  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatc 178  Q
    ||||||| ||||||| ||||||||||||||||||    
T  37382005 tatcatcgagtcatttaaccacacatcgttgatc 37382038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 22934835 - 22934910
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgactt 120  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  22934835 aattaagaggtaaatgacctttccgagacctctttgcggtgaatgttctaataatatcaacatcatcaagtgactt 22934910  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 24988849 - 24988917
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaa 113  Q
    ||||||||| || ||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  24988849 aattaggagatacatgccctttccgagacctctttgcggtgaatgttcgaataatatcaacatcatcaa 24988917  T

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Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 9741480 - 9741407
Alignment:
Q  282 gtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttattatgccatgttgtagaagtgatt 357  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||| || |||||||||||||    
T  9741480 gtgcacccgctattgttgaagatccacaaatt-aaagttaaaatctgatttatta-gccctggtgtagaagtgatt 9741407  T

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Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 43585903 - 43585836
Alignment:
Q  98 atatcaacatcatcaagtgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaacca 165  Q
    |||| |||||| |||||| ||||| |||||||||||||| |||||||||||||||||||||| |||||    
T  43585903 atattaacatcgtcaagtaacttggatatctcccgctcggtgtaacatatcatcaagtcattcaacca 43585836  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 38282546 - 38282510
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgc 81  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  38282546 aattatgaggtaaatgctctttccgagacctctttgc 38282510  T

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Target: scaffold0019 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 134890 - 135015
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  134890 aattaggaggtaaatgccctttccgagacctctttccggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtgtaaca 134989  T
Q  145 tatcatcaagtcattgaaccacacat 170  Q
    ||||||||||||||| ||||||||||    
T  134990 tatcatcaagtcatttaaccacacat 135015  T

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Target: scaffold0007 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 260057 - 259924
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||||| ||| |||||||  |||||||||||||||||||| |||||||||||||||||    
T  260057 aattaggtggtaaatgccatttccgagacctctttgcggtgaatgttcgaataatatcaatgtcatcaagtgacttgaatatatcccgctcgatgtaaca 259958  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatc 178  Q
    |||||||||||||||||||||| ||| |||||||    
T  259957 tatcatcaagtcattgaaccactcattgttgatc 259924  T

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Target: scaffold0198 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 1535 - 1430
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||| ||||||| |||||||||||||||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||||||| |||||||    
T  1535 aattaggaggcaaatgccatttccgagacctctttgcaatgaatgttcgaataatatcaacatcatcaagtgatttgaatatctcccgctcggtgtaaca 1436  T
Q  145 tatcat 150  Q
    ||||||    
T  1435 tatcat 1430  T

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Target: scaffold0168 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 15953 - 15832
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||| ||| |||||||  ||||||||||| |||||||||||||||||| |||||||    
T  15953 aattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtgatttgaatatctcccgctcggtgtaaca 15854  T
Q  145 tatcatcaagtcattgaaccac 166  Q
    ||||||||| ||||| ||||||    
T  15853 tatcatcaaatcatttaaccac 15832  T

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Target: scaffold0015 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 214197 - 214330
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    ||||||||||||||| ||||||||| |||||||||    | ||||||| ||| |||||||||||||||||||||| |||||||||| ||||| |||||||    
T  214197 aattaggaggtaaattccctttccgcgacctcttttgagttaatgttcgaataatatcaacatcatcaagtgactcgaatatctcctgctcggtgtaaca 214296  T
Q  145 tatcatcaagtcattgaaccacacatcgttgatc 178  Q
    ||||||||||||||| ||||||| || |||||||    
T  214297 tatcatcaagtcattcaaccacatattgttgatc 214330  T

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Target: scaffold0012 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 197244 - 197123
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaaca 144  Q
    |||||||||||||||||||||| |||||  |||||||| ||||||||  ||| |||||||  ||||||||||| |||||||||||||||||| |||||||    
T  197244 aattaggaggtaaatgcccttttcgagatttctttgcggtgaatgtttgaataatatcaatgtcatcaagtgatttgaatatctcccgctcggtgtaaca 197145  T
Q  145 tatcatcaagtcattgaaccac 166  Q
    ||||||||| ||||| ||||||    
T  197144 tatcatcaattcatttaaccac 197123  T

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Target: scaffold0002 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 45 - 262
Target Start/End: Original strand, 435384 - 435616
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaat--gttcaaattatatcaacatcatcaagtgacttgaatatctcccgctcgatgtaa 142  Q
    |||||||||||||||| ||||| ||||||||||| ||| | |||  |||| ||| |||||||||| |||||||||||||||||||| ||||||| |||||    
T  435384 aattaggaggtaaatgtccttttcgagacctcttcgcggttaatatgttctaataatatcaacataatcaagtgacttgaatatcttccgctcggtgtaa 435483  T
Q  143 -----catatcatcaagtcattgaaccacacatcgttgatcatat---tcataattctttctcacgggcttataaga-----ttactagcttattgacat 229  Q
         ||||||||||||||||||| ||||||||  |||||| | |   | | |||| ||||||||| ||||||||||     |||||| |||||||||||    
T  435484 catatcatatcatcaagtcattgagccacacattattgatcttgttggtaacaattttttctcacgagcttataagattattttactaacttattgacat 435583  T
Q  230 ggcttgataacttgtgtacttccaacttttgtt 262  Q
    || |||| |||| ||| ||||| ||||||||||    
T  435584 gggttgacaactggtggacttcgaacttttgtt 435616  T

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Target: scaffold0726 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 1022 - 954
Alignment:
Q  45 aattaggaggtaaatgccctttccgagacctctttgcgatgaatgttcaaattatatcaacatcatcaa 113  Q
    ||||||||| ||||||||||||| |||||||||||||| ||||||||| ||| ||||||||||||||||    
T  1022 aattaggagataaatgccctttcggagacctctttgcggtgaatgttcgaataatatcaacatcatcaa 954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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