View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6927_high_14 (Length: 426)
Name: NF6927_high_14
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6927_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 422
Target Start/End: Original strand, 39908302 - 39908705
Alignment:
| Q |
20 |
aatttctccatgtggtagccaagaagagacatatatagcctaaccaaagggctagttgtttggtatcaagcctacactattggttgtgcttagcaactaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39908302 |
aatttctccatgtggtagccaagaagagacatatatagcctaaccaaagggctagttgtttggtatcaagcctacactattggttgtgcttagcaactaa |
39908401 |
T |
|
| Q |
120 |
ttgcgattagtatataatcaaattgttagagaccaacctgtataacnnnnnnntagggaacaagatctcatgccgttgannnnnnncataggtgttttgt |
219 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39908402 |
ttgtgattagtatataatcaaattgttagagaccaacctgtataacaaaaaaatagggaacaagatctcatgccgttgatttttttcataggtgttttgt |
39908501 |
T |
|
| Q |
220 |
tcctaattgttttcttctttatttcaaggtgtgaaacaaacacataaacatgatacgtgtcaatgaagctacacatgttcttcttcttgattggttttca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39908502 |
tcctaattgttttcttctttatttcaaggtgtgaaacaaacacataaacatgatacgtgtcaatgaagctacacatgttcttcttcttgattggttttca |
39908601 |
T |
|
| Q |
320 |
aaacatcatt-aannnnnnnnatcatatggttttctatttgaacgatgccgtggtccttcctttgggctttgggtctttttctagggtatatttcttctc |
418 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39908602 |
aaacatcattaaattttttttatcatatggttttctatttgaacgatgccgtggtccttcctttgggctttgggtctttttctagggtatatttcttctc |
39908701 |
T |
|
| Q |
419 |
tctc |
422 |
Q |
| |
|
|||| |
|
|
| T |
39908702 |
tctc |
39908705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University