View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6927_high_17 (Length: 341)
Name: NF6927_high_17
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6927_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 45284537 - 45284206
Alignment:
| Q |
1 |
atctctttcatcattgattcaagctcgtctttgctactagctctaccctctgaatgttcgttcacatacttgtttctttcaatatcagagtttttcaaca |
100 |
Q |
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| T |
45284537 |
atctctttcatcattgattcaagctcgtctttgctactagctctaccctctgaatgttcgttcacatacttgtttctttcaatatcagagtttttcaaca |
45284438 |
T |
|
| Q |
101 |
aggtagacaattcctgaatcatcttttggttttgttccggcttaagaagtgctttgatgtgtgcaacatgctttgcttctaattgcaccttgtagctggc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45284437 |
aggtagacaattcctgaatcatcttttggttttgttctggcttaagaagtgctttgatgtgtgcaacatgctttgcttctaattgcaccttgtagctggc |
45284338 |
T |
|
| Q |
201 |
caattccgttgtcaaatcctcaatctctttttcatagtcacgctggcatacaaataaaagtgtaacaataatgacataaaaatcatgaattaattagata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45284337 |
caattccgttgtcaaatcctcaatctctttttcatagtcacgctggcatacaaataaaagtgtgacaataatgacataaaaatcatgaattaattagata |
45284238 |
T |
|
| Q |
301 |
tctatctatgtatatagtccaattagtattat |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
45284237 |
tctatctatgtatatagtccaattagtattat |
45284206 |
T |
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