View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6927_high_18 (Length: 341)
Name: NF6927_high_18
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6927_high_18 |
 | |
|
| [»] chr6 (8 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr4 (8 HSPs) |
| |
|
| [»] scaffold0097 (1 HSPs) |
| | |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0867 (1 HSPs) |
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|
Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 6921726 - 6921386
Alignment:
| Q |
1 |
tgggtgataatgtttggagagacatggattgtttgcctgtggtattggtgcgtcatccttttggtaagtatgtgcgaaatggcgtttatttgaaaagtag |
100 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6921726 |
tgggtgataatgattggagagacattgattgtttgcctgtggtattggtgcgtcatccttttggtaagtatgtgcgaaatggcgtttatttgaaaagtag |
6921627 |
T |
|
| Q |
101 |
tgttagttggtgtgttcgttgcagatattattgtcatttgaaaaatcttattgttgaacaatttgtgatgatctcacttgatttggggacagagacatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6921626 |
tgttagttggtgtgttcgttgcagatattattgtcatttgaaaaatcttattgttgaacaatttgtgatgatctcacttgatttggggacagagacatat |
6921527 |
T |
|
| Q |
201 |
acacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaactctttctgtattgatggattgcctctatttttcttatgattctaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6921526 |
acacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaactctttctgtattgatggattgcctctatttttcttatgattctaaga |
6921427 |
T |
|
| Q |
301 |
aaacccattttgttatctggcaaatgaaggaatttggagtt |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6921426 |
aaacccattttgttatctggcaaatgaaggaatttggagtt |
6921386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 6948256 - 6947916
Alignment:
| Q |
1 |
tgggtgataatgtttggagagacatggattgtttgcctgtggtattggtgcgtcatccttttggtaagtatgtgcgaaatggcgtttatttgaaaagtag |
100 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||||||||||||| ||||| ||||||||||||||||||||||| || | || ||||||||||| ||||| |
|
|
| T |
6948256 |
tgggtgataatgattggagagaaattgattgtttgcctgtggtagtggtgagtcatccttttggtaagtatgtgagagacggtgtttatttgaatagtag |
6948157 |
T |
|
| Q |
101 |
tgttagttggtgtgttcgttgcagatattattgtcatttgaaaaatcttattgttgaacaatttgtgatgatctcacttgatttggggacagagacatat |
200 |
Q |
| |
|
| ||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6948156 |
tattagttggtgtgttcgtcaccgatattattgtcatttgaagaatcttatggttgaacaacttgtgatgatctcacttgatttggggacagagagatat |
6948057 |
T |
|
| Q |
201 |
acacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaactctttctgtattgatggattgcctctatttttcttatgattctaaga |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | |||||| |||||| |||| |
|
|
| T |
6948056 |
acacggttgttgctccctcgatgttgtgatgaagagctacatgatgttccaactctttctgtgttgatggattgcctttgtttttcacatgatttcaaga |
6947957 |
T |
|
| Q |
301 |
aaacccattttgttatctggcaaatgaaggaatttggagtt |
341 |
Q |
| |
|
||||||| |||||| | |||||||||||||||||||||||| |
|
|
| T |
6947956 |
aaacccactttgttctttggcaaatgaaggaatttggagtt |
6947916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 77 - 341
Target Start/End: Complemental strand, 6935518 - 6935254
Alignment:
| Q |
77 |
aaatggcgtttatttgaaaagtagtgttagttggtgtgttcgttgcagatattattgtcatttgaaaaatcttattgttgaacaatttgtgatgatctca |
176 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||| || |||||||| |||||||||||| |
|
|
| T |
6935518 |
aaatggtgtttatttgaaaagtagtattagttggtgtgttcgttaccgatataattgtcatttgaagaatcttacagtcgaacaattcgtgatgatctca |
6935419 |
T |
|
| Q |
177 |
cttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaactctttctgtattgatggattgcc |
276 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||| |
|
|
| T |
6935418 |
cttgatttggggacagagacatgtacaaaattgttgctccctcgatgttgtgatgaagagctacatggctttcctactctttctggattgatggattgcc |
6935319 |
T |
|
| Q |
277 |
tctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagtt |
341 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
6935318 |
tctatttttcttatgattttaagaaaacccattatgttatttggcaaatgaaggaatttggagtt |
6935254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 6943318 - 6943003
Alignment:
| Q |
1 |
tgggtgataatgtttggagagacatggattgtttgcctgtggtattggtgcgtcatccttttggtaagtatgtgcgaaatggcgtttatttgaaaagtag |
100 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||| ||||| ||||||| |||| | ||||| |||||| ||||||||||||||||| |
|
|
| T |
6943318 |
tgggtgataatgattggagagacattgattgtttgcatgtggcattggtgtgtca------------gaatgtgaaaaatggtgtttatttgaaaagtag |
6943231 |
T |
|
| Q |
101 |
tgttagttggtgtgttcgttgcagatattattgtcatttgaaaaatcttattgttgaacaatttgtgatgatctcacttgatttggggacagagacatat |
200 |
Q |
| |
|
| ||||||||||||||||| | ||||| ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6943230 |
tattagttggtgtgttcgtcaccgatataattgtcatttgaagaatcttacagttgaacaattcgtgatgatctcacttgatttggggacagagacatat |
6943131 |
T |
|
| Q |
201 |
acacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaactctttctgtattgatggattgcctctatttttcttatgattctaaga |
300 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||| || |||| || |||||||||||||||||||||||||||| ||||| |
|
|
| T |
6943130 |
acaaaattgttgctccctcaatgttgtgatgaagagctacatgattttcctac-------------atggattgcctctatttttcttatgattttaaga |
6943044 |
T |
|
| Q |
301 |
aaacccattttgttatctggcaaatgaaggaatttggagtt |
341 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||||||||| |
|
|
| T |
6943043 |
aaacctattttgttatttagcaaatgaaggaatttggagtt |
6943003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 6954895 - 6954555
Alignment:
| Q |
1 |
tgggtgataatgtttggagagacatggattgtttgcctgtggtattggtgcgtcatccttttggtaagtatgtgcgaaatggcgtttatttgaaaagtag |
100 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| || |||| ||||||| ||||| || | | || || | || || ||||||||||| | ||| |
|
|
| T |
6954895 |
tgggtgataatgtttggagagatattgattgtttcccggtggaattggtgtatcatcgttctttaatgtttgcgagagataaagtttatttgaataatag |
6954796 |
T |
|
| Q |
101 |
tgttagttggtgtgttcgttgcagatattattgtcatttgaaaaatcttattgttgaacaatttgtgatgatctcacttgatttggggacagagacatat |
200 |
Q |
| |
|
| ||| |||| ||| ||| | ||||||||||||||||||| ||||||| |||||| |||||||||| |||||||||||| || |||||||||||||| |
|
|
| T |
6954795 |
tattaattgggttgtccgtcaccgatattattgtcatttgaagaatcttacagttgaaaaatttgtgatcatctcacttgatatgaggacagagacatat |
6954696 |
T |
|
| Q |
201 |
acacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaactctttctgtattgatggattgcctctatttttcttatgattctaaga |
300 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||| || | |||||||||||||||||||||||||||||| ||| |||||||||| || | |
|
|
| T |
6954695 |
acacagttgttgctcccccgatgttgtgatgaagagctaaccggtgctgcaactctttctgtattgatggattgcctctgtttatcttatgatttcaaca |
6954596 |
T |
|
| Q |
301 |
aaacccattttgttatctggcaaatgaaggaatttggagtt |
341 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6954595 |
aaacccattttgttatttggcaaatgaaggaatttggagtt |
6954555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 159 - 338
Target Start/End: Original strand, 20770502 - 20770681
Alignment:
| Q |
159 |
caatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaactcttt |
258 |
Q |
| |
|
||||||||||| ||||| |||||||||| || ||||||||| | ||| ||||| ||||||| ||||||||||||| | || | || || |||||||| |
|
|
| T |
20770502 |
caatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatgaatttccacttgataatcaaactcttt |
20770601 |
T |
|
| Q |
259 |
ctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttgga |
338 |
Q |
| |
|
||| ||||||||||| | | ||||||| ||||| ||| ||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
20770602 |
gtgtgttgatggattgtatttgtttttctcatgatgttaaaaaaacttattttgttatatggcaaatgaaggaatttgga |
20770681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 24950344 - 24950272
Alignment:
| Q |
162 |
tttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaag |
234 |
Q |
| |
|
|||| ||| ||||||||||||| | ||||||||||||| | ||||||||||| ||||||| ||| | |||||| |
|
|
| T |
24950344 |
tttgcgatcatctcacttgattcgaggacagagacatacagacaattgttgccccctcgaggttctaatgaag |
24950272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6935582 - 6935533
Alignment:
| Q |
1 |
tgggtgataatgtttggagagacatggattgtttgcctgtggtattggtg |
50 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||| |||| ||||||| |
|
|
| T |
6935582 |
tgggtgataatgattggagagacattgattgtttgcaagtggcattggtg |
6935533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 1986334 - 1985995
Alignment:
| Q |
1 |
tgggtgataatgtttggagagacatggattgtttgcctgtggtattggtgcgtcatccttttggt---aagtatgtgcgaaatggcgtttatttgaaaag |
97 |
Q |
| |
|
||||| |||||| ||||||||| || |||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||| ||||||||||| || |
|
|
| T |
1986334 |
tgggttataatgattggagagaaattgattgtttgcctgtggtagtggtgtgtcatccttttggtggtaagtatgtgagaaatggtgtttatttgaatag |
1986235 |
T |
|
| Q |
98 |
tagtgttagttggtgtgttcgttgcagatattattgtcatttgaaaaatcttattgttgaacaatttgtgatgatctcacttgatttggggacagagaca |
197 |
Q |
| |
|
|||| ||||||||||||||||| | ||||| ||||||||||||| ||||||| ||||||||| |||| || ||||||||||||||||||||||||| | |
|
|
| T |
1986234 |
tagtattagttggtgtgttcgtcaccgatataattgtcatttgaagaatcttacagttgaacaacttgtaattatctcacttgatttggggacagagaga |
1986135 |
T |
|
| Q |
198 |
tatacacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaactctttctgtattgatggattgcctctatttttcttatgattcta |
297 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
1986134 |
tatacacagttgttgctccctcgatattgtgatgaagatctacatggtgttccaactctttctgtgttgatggattgcctctatttttcttatgatttca |
1986035 |
T |
|
| Q |
298 |
agaaaacccattttgttatctggcaaatgaaggaatttgg |
337 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
1986034 |
agaaaacccattttgttctttggcaaatgaaggaatttgg |
1985995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 124 - 235
Target Start/End: Complemental strand, 15572163 - 15572052
Alignment:
| Q |
124 |
gatattattgtcatttgaaaaatcttattgttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatg |
223 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||| | |||| |||||||| |
|
|
| T |
15572163 |
gatattattgtcatttgaagaatcttacgattgaacaatttgtgataatctcgcttgatttggggacagaaacatatagacaatcgatgctacctcgatg |
15572064 |
T |
|
| Q |
224 |
ttgtgatgaaga |
235 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15572063 |
ttgtgatgaaga |
15572052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 154 - 341
Target Start/End: Complemental strand, 13417146 - 13416947
Alignment:
| Q |
154 |
ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaagagctacataatgttcca-- |
251 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||| || |||| |
|
|
| T |
13417146 |
ttgaacaatttgtgattatctcggttgagttggggactgagacatatacacagttgttgctacctcgatgttgtgaggaagagctacgcgatcctccaat |
13417047 |
T |
|
| Q |
252 |
----------actctttctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagtt |
341 |
Q |
| |
|
||||||||| | |||| ||||| || | |||||||||||||| |||||||||| ||||| | || |||||||||||||||||||||||| |
|
|
| T |
13417046 |
acttcctcctactctttctatgttgaatgattgtctttgtttttcttatgattttaagaaaacctattttatcatatggcaaatgaaggaatttggagtt |
13416947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 14076542 - 14076618
Alignment:
| Q |
154 |
ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgat |
230 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
14076542 |
ttgagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgttactccctccatgttgtgat |
14076618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 14386570 - 14386646
Alignment:
| Q |
154 |
ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgat |
230 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
14386570 |
ttgagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgttactccctccatgttgtgat |
14386646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 18515031 - 18514945
Alignment:
| Q |
154 |
ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaagagctac |
240 |
Q |
| |
|
||||||||| ||| || |||| ||||||||| |||||||||||||||||| || ||||||||||||| |||| || ||||||||| |
|
|
| T |
18515031 |
ttgaacaatatgttattgtctcgcttgatttgaagacagagacatatacacagttcttgctccctcgatcttgtaataaagagctac |
18514945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 24385051 - 24385119
Alignment:
| Q |
166 |
tgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaag |
234 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| ||| ||||||||||||| ||||| | ||| |||||||| |
|
|
| T |
24385051 |
tgatcatctcacttaatttggggacagagaaatacacacaattgttgccccctcaaggttctgatgaag |
24385119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 341
Target Start/End: Complemental strand, 15572018 - 15571931
Alignment:
| Q |
254 |
tctttctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagtt |
341 |
Q |
| |
|
||||||||| || |||||||| || | |||||||||||||| ||| |||||||||||| || |||||||||| ||| ||||||||| |
|
|
| T |
15572018 |
tctttctgtgtttatggattgtctttgtttttcttatgatttcaagggaacccattttgtcatgtggcaaatgagggagtttggagtt |
15571931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 24391269 - 24391316
Alignment:
| Q |
171 |
atctcacttgatttggggacagagacatatacacaattgttgctccct |
218 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||| |||| |
|
|
| T |
24391269 |
atctcacttgatttggggatagagacatacacacaattgttgccccct |
24391316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 341
Target Start/End: Complemental strand, 18514910 - 18514823
Alignment:
| Q |
254 |
tctttctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagtt |
341 |
Q |
| |
|
||||||||| || ||||||||| | | |||||||||||||| ||||||| |||||| |||| ||| ||||| | |||||||||||| |
|
|
| T |
18514910 |
tctttctgttttaatggattgcatgtgtttttcttatgatttcaagaaaagccatttcattatatggaaaatggacgaatttggagtt |
18514823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 16839613 - 16839559
Alignment:
| Q |
145 |
atcttattgttgaacaatttgtgatgatctcacttgatttggggacagagacata |
199 |
Q |
| |
|
|||||| |||||| ||||||||||| || |||||||||||||| || |||||||| |
|
|
| T |
16839613 |
atcttactgttgagcaatttgtgattatttcacttgatttgggcacggagacata |
16839559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 22063636 - 22063673
Alignment:
| Q |
301 |
aaacccattttgttatctggcaaatgaaggaatttgga |
338 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
22063636 |
aaactcattttgttatatggcaaatgaaggaatttgga |
22063673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 9807814 - 9807858
Alignment:
| Q |
297 |
aagaaaacccattttgttatctggcaaatgaaggaatttggagtt |
341 |
Q |
| |
|
||||||||| |||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
9807814 |
aagaaaaccgatttcgttatatggcagatgaaggaatttggagtt |
9807858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 22100467 - 22100527
Alignment:
| Q |
281 |
tttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagtt |
341 |
Q |
| |
|
||||||| |||||| || ||||| |||||| |||| |||||||||||| ||||||||||| |
|
|
| T |
22100467 |
tttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagtt |
22100527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 341
Target Start/End: Complemental strand, 18965056 - 18964866
Alignment:
| Q |
154 |
ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaagagcta---cataatgttcc |
250 |
Q |
| |
|
|||| ||||||||||| |||||||||||| |||||| ||||||| |||||| ||||| ||||||| |||||||||||| || | | | || ||| |
|
|
| T |
18965056 |
ttgagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtgatgagttgcaaccgcttgatactcc |
18964957 |
T |
|
| Q |
251 |
aactctttctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagtt |
341 |
Q |
| |
|
|| |||| |||||||||| ||||||| | |||| || ||||| | | ||||| ||||| |||| |||||||||||||||||||||||| |
|
|
| T |
18964956 |
gaccctttgtgtattgatgaattgcctttgttttactcatgatcttgaaaaaactcatttcattatatggcaaatgaaggaatttggagtt |
18964866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 338
Target Start/End: Original strand, 29647633 - 29647707
Alignment:
| Q |
264 |
ttgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttgga |
338 |
Q |
| |
|
|||||||||||||| | ||||||| | || ||||||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
29647633 |
ttgatggattgcctttgtttttctcaccatcttaagaaaactcattttgttatatggcaaatgatagaatttgga |
29647707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 264 - 341
Target Start/End: Original strand, 53774797 - 53774874
Alignment:
| Q |
264 |
ttgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagtt |
341 |
Q |
| |
|
||||||||||| | | |||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53774797 |
ttgatggattgtatttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggagtt |
53774874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 53774701 - 53774750
Alignment:
| Q |
156 |
gaacaatttgtgatgatctcacttgatttggggacagagacatatacaca |
205 |
Q |
| |
|
|||||||||||||| || || |||||||||| |||||||||||||||||| |
|
|
| T |
53774701 |
gaacaatttgtgattatttcgcttgatttggagacagagacatatacaca |
53774750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 10475164 - 10475239
Alignment:
| Q |
264 |
ttgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggag |
339 |
Q |
| |
|
||||||||||| || | ||||| |||||||| | || |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
10475164 |
ttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaaggattttggag |
10475239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 11971058 - 11971019
Alignment:
| Q |
301 |
aaacccattttgttatctggcaaatgaaggaatttggagt |
340 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11971058 |
aaactcattttgttatatggcaaatgaaggaatttggagt |
11971019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 11981759 - 11981720
Alignment:
| Q |
301 |
aaacccattttgttatctggcaaatgaaggaatttggagt |
340 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11981759 |
aaactcattttgttatatggcaaatgaaggaatttggagt |
11981720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 3565701 - 3565774
Alignment:
| Q |
264 |
ttgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttgg |
337 |
Q |
| |
|
|||| ||| ||||| | |||||||||| || |||||||||| ||||| |||| ||||| |||||||||||||| |
|
|
| T |
3565701 |
ttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttgg |
3565774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 8443567 - 8443490
Alignment:
| Q |
264 |
ttgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagtt |
341 |
Q |
| |
|
|||||||| || || | |||||||||||||| |||| ||| |||| |||||| ||||| |||||||| ||||||||| |
|
|
| T |
8443567 |
ttgatggactgtctttgtttttcttatgatttcaagagaactcattatgttatttggcagatgaaggattttggagtt |
8443490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 10464226 - 10464299
Alignment:
| Q |
264 |
ttgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttgg |
337 |
Q |
| |
|
||||||||||| || | ||||| |||||||| | || |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
10464226 |
ttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaaggattttgg |
10464299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 16595 - 16530
Alignment:
| Q |
154 |
ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctc |
219 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||| |||||||| |||||| |||||||||||| |
|
|
| T |
16595 |
ttgaacaatttgtgatcatctccctcgatttggggatggagacatacacacaaatgttgctccctc |
16530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 20712756 - 20712691
Alignment:
| Q |
154 |
ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctc |
219 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||| |||||||| |||||| |||||||||||| |
|
|
| T |
20712756 |
ttgaacaatttgtgatcatctccctcgatttggggatggagacatacacacaaatgttgctccctc |
20712691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 14514730 - 14514795
Alignment:
| Q |
154 |
ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctc |
219 |
Q |
| |
|
||||||||||||| | |||| ||||||||| ||||||||||||||||||| || |||||||||| |
|
|
| T |
14514730 |
ttgaacaatttgtttttgtctcgcttgatttgaggacagagacatatacacagttcttgctccctc |
14514795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 20967545 - 20967602
Alignment:
| Q |
152 |
tgttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattg |
209 |
Q |
| |
|
|||||| ||||||||||| || || |||||||||||||||||||| || ||||||||| |
|
|
| T |
20967545 |
tgttgagcaatttgtgatcatttcccttgatttggggacagagacctacacacaattg |
20967602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 14514874 - 14514934
Alignment:
| Q |
281 |
tttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagtt |
341 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| ||| ||||| | |||||||||||| |
|
|
| T |
14514874 |
tttttcttatgatttcaagaaaacccatcttgttatatggaaaatggatgaatttggagtt |
14514934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 20699663 - 20699621
Alignment:
| Q |
154 |
ttgaacaatttgtgatgatctcacttgatttggggacagagac |
196 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
20699663 |
ttgatcaatttgtgattatctcacttgatttgggaacagagac |
20699621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 42846501 - 42846461
Alignment:
| Q |
301 |
aaacccattttgttatctggcaaatgaaggaatttggagtt |
341 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
42846501 |
aaacccattttgttatttggcaaatgaaggattttggagtt |
42846461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0867 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0867
Description:
Target: scaffold0867; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 4765 - 4705
Alignment:
| Q |
281 |
tttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagtt |
341 |
Q |
| |
|
||||||| |||||| || ||||| |||||| |||| |||||||||||| ||||||||||| |
|
|
| T |
4765 |
tttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagtt |
4705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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