View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6927_high_32 (Length: 240)
Name: NF6927_high_32
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6927_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 32837249 - 32837047
Alignment:
| Q |
20 |
actccgaccattccttcatatgctgcttaattaattgatttatagcaacttcctttatcatgcacaataaagcattgcacctggctaagttagacaatgt |
119 |
Q |
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| T |
32837249 |
actccgaccattccttcatatgctgcttaattgattgatttatagcaacttcctttatcatgcacaataaagcattgcacctggctaagttagacaatgt |
32837150 |
T |
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| Q |
120 |
tgtactagactattttaatttacttccatctaatgcactgtctagaactttcatctaatgcaattttcaaaaatcagactaaagaaacaactgttatgga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32837149 |
tgtactagactattttaatttacttccatctaatgcactgtctagaactttcatctaatgcaattttcaaaaatcagactaaagaaacaactgttatgga |
32837050 |
T |
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| Q |
220 |
gca |
222 |
Q |
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||| |
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| T |
32837049 |
gca |
32837047 |
T |
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