View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6927_high_34 (Length: 238)
Name: NF6927_high_34
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6927_high_34 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 12628757 - 12628981
Alignment:
| Q |
14 |
gtgtgatctcagatagggctgaggagaagagggaggcaattagacaactatgcttttcccttgagcaatataggagtcgatatctcgaactttttcaggt |
113 |
Q |
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| T |
12628757 |
gtgtgatctcagatagggctgaggagaagagggaggcaattagacaattatgcttttcccttgagtactataggagtcgatatctcaaactttttcaggc |
12628856 |
T |
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| Q |
114 |
ggttgttggccataggcgtcgtggcggtcacactgttttagcttcctaaagttacattctcatccnnnnnnnnnnnnnnngtaggtctttagttattagt |
213 |
Q |
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| T |
12628857 |
ggttgttggccataggcgtcgtggcggtcacactgttatagcttcctaaagttacattctcatccttttgttttgttttagtagatctttagttattagt |
12628956 |
T |
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| Q |
214 |
ttttcatctgtttcatattcattcc |
238 |
Q |
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| T |
12628957 |
ttttcatctgtttcatattcattcc |
12628981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 12622831 - 12622922
Alignment:
| Q |
14 |
gtgtgatctcagatagggctgaggagaagagggaggcaattagacaactatgcttttcccttgagcaatataggagtcgatatctcgaactt |
105 |
Q |
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| T |
12622831 |
gtgtgatctccgatagggctgaggagaagagggaggcaattagacaactaagtttttctgttgatcattataggagtctatatctcgaactt |
12622922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 42844241 - 42844323
Alignment:
| Q |
14 |
gtgtgatctcagatagggctgaggagaagagggaggcaattagacaactatgcttttcccttgagcaatataggagtcgatat |
96 |
Q |
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| T |
42844241 |
gtgtgatttcagatgtggccgaggagaagaaggaggcaattagacaactaagttattcacttgagcactataagagtcgatat |
42844323 |
T |
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