View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6927_high_5 (Length: 576)
Name: NF6927_high_5
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6927_high_5 |
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| [»] scaffold0332 (1 HSPs) |
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Alignment Details
Target: scaffold0332 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: scaffold0332
Description:
Target: scaffold0332; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Original strand, 6478 - 7031
Alignment:
| Q |
18 |
attttatctccattctgcagaaatatgtgttaatataatccatatcatacctgttatgaatattgaaggaaaacaacagggctacttgtaaaatcatatt |
117 |
Q |
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| T |
6478 |
attttatctccattctgcagaaatatgtgttaatataatccatatcatacctgttatgaatattgaaggaaaacaacagggctacttgtaaaatcatatt |
6577 |
T |
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| Q |
118 |
cctatgtctcaattgttcacattgctatcgctgtgatttttatcttctgcattttacatgagaagttgattcattccaattttgaatgcaaatcgttctt |
217 |
Q |
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| T |
6578 |
cctatgtctcaattgttcacattgctatcgctgtgatttttatcttctgcattttacatgagaagttgattcattccaattttgaatgcaaatcgttctt |
6677 |
T |
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| Q |
218 |
gaggaagtatgaaatttatgctcattcgaatttggatcatgtgcaatttagtctctgatatttgaaaaggtgtatttcgcttccttacgtgtaatattaa |
317 |
Q |
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| T |
6678 |
ggggaagtatgaaatttatgctcattcgaatttggatcatgtgcaatttagtctctgatatttgaaaaggtgtatttcgcttccttacgtgtaatattaa |
6777 |
T |
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| Q |
318 |
ccctttcataatcaatatgtagcaaaataggattagccatggaagggttttctctcacattttaacaaggttaaagaacgaaatacacattttaatcatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6778 |
ccctttcataatcaatatgtagcaaaataggattagccatggaagggttttctctcacattttaacaaggttaaagaacgaaatacacattttaatcatt |
6877 |
T |
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| Q |
418 |
agagtctaaatcacatgcacatgatataatctttagcgttataatttgccttttttccttctctctattagaaaagttattgaggtttcctgctcactaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6878 |
agagtctaaatcacatgcacatgatataatctttagcgttataatttgccttttttccttctctctattagaaaagttattgaggtttcctgctcactaa |
6977 |
T |
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| Q |
518 |
aactagtgtataccctttaacaggcagcattctttggtgctccaacacgaaact |
571 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6978 |
aactagtgtataccctttaacaggcagcattctttggtgctccaacacggaact |
7031 |
T |
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