View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6927_high_9 (Length: 472)
Name: NF6927_high_9
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6927_high_9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 66 - 472
Target Start/End: Complemental strand, 40562919 - 40562531
Alignment:
| Q |
66 |
ttgtaacttatttcatacagcactctattattatagacatgtccaccaatcgctttcccgttctctctcatctataatttagtctcatttttatttgatt |
165 |
Q |
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| T |
40562919 |
ttgtaatttatttcatacagcactctattattatagacatgtccaccaatcgctttcccgttctctctcatctataatttagtctaatttttatttgatt |
40562820 |
T |
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| Q |
166 |
tcctttataagaaaatatctaaataaacacattaaaaaatgtcaagcaaaagagac--------attagttgaatatcaacaccatagaacgaacctata |
257 |
Q |
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| T |
40562819 |
tcctttataagaaaatatctaaataaacacattaaaaaatgtcaagcaaaacagacaaatttctattagttgaatatcaacaccataga-------tata |
40562727 |
T |
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| Q |
258 |
tagatagatagatataataataatcaaggatcccatcaatatcaaaataactcaacttgagacttatttcattcttctccctcctttctcttcttcaaac |
357 |
Q |
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| T |
40562726 |
-------------ataataa---tcaaggatcccatcaatatcaaaataactcaacttgagacttatttcattcttctccctcctttctcttcttca--- |
40562646 |
T |
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| Q |
358 |
accttcacctcannnnnnnnccaatatggttactacaacttcatacgtcacaaatgttaaatccaccgttcatttctcatgcatatcaaatcaacaccgt |
457 |
Q |
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| T |
40562645 |
accttcacctcattttttttccaatatggttactacaacttcatacgtcacaaatgttaaatccaccgttcatttctcatgcatatcaaatcaacaccgt |
40562546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40563023 - 40562953
Alignment:
| Q |
1 |
ccttagttgaacatcaacatcatggaacgaacattttgacggaagaatgaacacaaccataaaaattgtaa |
71 |
Q |
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| T |
40563023 |
ccttagttgaacatcaacatcatggaacgaacattttgacggaagaatgaacacaaccataaaaattgtaa |
40562953 |
T |
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