View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6927_low_1 (Length: 953)

Name: NF6927_low_1
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6927_low_1
NF6927_low_1
[»] chr2 (7 HSPs)
chr2 (15-934)||(3387424-3388344)
chr2 (810-934)||(3393940-3394064)
chr2 (20-89)||(39711523-39711592)
chr2 (50-142)||(39229001-39229093)
chr2 (199-250)||(14695111-14695162)
chr2 (248-310)||(30531485-30531546)
chr2 (50-138)||(4724449-4724538)
[»] chr7 (1 HSPs)
chr7 (50-139)||(10623451-10623540)
[»] chr6 (2 HSPs)
chr6 (51-175)||(3008703-3008831)
chr6 (47-119)||(29333803-29333876)
[»] chr8 (2 HSPs)
chr8 (54-97)||(28180442-28180485)
chr8 (266-312)||(33012589-33012635)
[»] chr5 (1 HSPs)
chr5 (55-163)||(43168611-43168723)
[»] chr4 (2 HSPs)
chr4 (20-133)||(38011484-38011598)
chr4 (185-250)||(18402873-18402938)
[»] chr3 (1 HSPs)
chr3 (276-309)||(54260041-54260074)


Alignment Details
Target: chr2 (Bit Score: 797; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 797; E-Value: 0
Query Start/End: Original strand, 15 - 934
Target Start/End: Complemental strand, 3388344 - 3387424
Alignment:
Q  15 gacatcaaaatccaagtgccaattgctctacgaataaagcagcaagcataaaactctttcaagcatgaagtaccagcgtgcaagcaaataagacaacttg 114  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3388344 gacatcaaaatccaagtgccaattgctctatgaataaagcagcaagcataaaactatttcaagcatgaagtaccagcgtgcaagcaaataagacaacttg 3388245  T
Q  115 aaaccggtagatctcaacaaatctgaaatatca-agtcgaagaagtcaagacaccaaacacagtctgttgtttcaaaagagacctgtaaaaacttagatc 213  Q
    |||||   |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  3388244 aaacctacagatctcaacaaatctaaaatatcagagtcgaagaagtcaagacaccaaacac-gtctgttgtttcaaaagagacccataaaaacttagatc 3388146  T
Q  214 gatagataagtccaatacgttagtaatcagacccttttaagataaaa-cttccttttatagacttcttaaacaatgtctttagaacacttgttaacaaaa 312  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  3388145 gattgataagtccaatacgttagtaatcagacccttttaagataaaaacttccttttatagacttcttaaacaatatttctagaacacttgttaacaaaa 3388046  T
Q  313 ccttttnnnnnnntattattttaattgttttaatctattcaacattgcataagatagacaaaccatagatttcttaatctccaaaatcaatttctcctga 412  Q
    ||||||       ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3388045 ccttttaaaaaaatattattttaattgttttaatctatgcaacgttgcataagatagacaaaccatagatttcttaatctccaaaatcaatttctcctta 3387946  T
Q  413 attatctcaaggaagcagcctgtttctttcccccaaaaattaatgggggaggagtgaccatttcggtggatttgaattaacgttacccccatttaaccaa 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3387945 attatctcaaggaagcagcctgtttctttcccccaaaaattaatgggggaggagtgaccatttcggtggatttgaattaacgttacccccatttaaccaa 3387846  T
Q  513 attaaaatcaacaaaaaactataagaatatggccacacatacataatcccacaaaatagttgaggcggttccaaacatgacggccagaaaatcaaacatt 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3387845 attaaaatcaacaaaaaactataagaatatggccacacatacataatcccacaaaatagttgaggcggttccaaacatgacggccagaaaatcaaacatt 3387746  T
Q  613 tgtaccctttttgtactttggttttctccctttaaattcctaagtattttcttggatgcaccatacccctaatttgaattgtaaaattaaaataatgaaa 712  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3387745 tgtaccctttttgtactttggttttctccctttaaattcctaagtattttcttggatgcaccatacccctaatttgaagtgtaaaattaaaataatgaaa 3387646  T
Q  713 ccccatttgctccaaaatttactcaaaatgataactatataacaacaactttcaaaccaaaacacaattaagaaacaaagttttcaattaagataggaag 812  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3387645 ccccatttgctccaaaatttactcaaaatgataactatataacaacaactttcaaaccaaaacacaattaagaaacaaagttttcaattaagataggaag 3387546  T
Q  813 cttatagaagaagccatgcaacgtttctaccgcaaaattattcaaccaacatgtcaagttttcataaaccaccgtggaaaagacacaaagaagaatgttg 912  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3387545 cttatagaagaagccatgcaacatttctaccgcaaaattattcaaccaacatgtcaagttttcataaaccaccgtggaatagacacaaagaagaatgttg 3387446  T
Q  913 cagggttattatacagagattt 934  Q
    |||||||| |||||| ||||||    
T  3387445 cagggttactatacaaagattt 3387424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 810 - 934
Target Start/End: Complemental strand, 3394064 - 3393940
Alignment:
Q  810 aagcttatagaagaagccatgcaacgtttctaccgcaaaattattcaaccaacatgtcaagttttcataaaccaccgtggaaaagacacaaagaagaatg 909  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |    
T  3394064 aagcttatagaagaagccatgcaacgtttctaccgcaaaattgttcaaccaacatgtcaagttttcataaaccaccgtgggatagacacaaagaagaacg 3393965  T
Q  910 ttgcagggttattatacagagattt 934  Q
    |||||||||||||||||| ||||||    
T  3393964 ttgcagggttattatacaaagattt 3393940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 39711523 - 39711592
Alignment:
Q  20 caaaatccaagtgccaattgctctacgaataaagcagcaagcataaaactctttcaagcatgaagtacca 89  Q
    |||||||||||||||||  |||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  39711523 caaaatccaagtgccaacagctctctgaacaaagcagcaagcataaaactctttcaagcatgaagtacca 39711592  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 39229093 - 39229001
Alignment:
Q  50 aaagcagcaagcataaaactctttcaagcatgaagtaccagcgtgcaagcaaataagacaacttgaaaccggtagatctcaacaaatctgaaa 142  Q
    ||||||||||||||||||||||||| ||||||||||||| || || | ||| | ||||| |||||||| | | | ||||||||| ||||||||    
T  39229093 aaagcagcaagcataaaactctttcgagcatgaagtaccggcatgtaggcagacaagacgacttgaaaactgcaaatctcaacagatctgaaa 39229001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 14695111 - 14695162
Alignment:
Q  199 gtaaaaacttagatcgatagataagtccaatacgttagtaatcagacccttt 250  Q
    |||| ||||||||||||  ||||||||||||||||||||||  |||||||||    
T  14695111 gtaagaacttagatcgagtgataagtccaatacgttagtaactagacccttt 14695162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 248 - 310
Target Start/End: Complemental strand, 30531546 - 30531485
Alignment:
Q  248 ttttaagataaaacttccttttatagacttcttaaacaatgtctttagaacacttgttaacaa 310  Q
    ||||||||||||||||  | ||||| | |||||||||||| ||||||||||| ||||||||||    
T  30531546 ttttaagataaaacttt-tattataaatttcttaaacaatatctttagaacatttgttaacaa 30531485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 4724538 - 4724449
Alignment:
Q  50 aaagcagcaagcataaaa-ctctttcaagcatgaagtaccagcgtgcaagcaaataagacaacttgaaaccggtagatctcaacaaatct 138  Q
    |||||||||||||||||| ||||||| ||||| ||||| ||  ||| | | ||| |||||||||||||||  |  |||||||||||||||    
T  4724538 aaagcagcaagcataaaagctctttcgagcattaagtatcatagtgtaggtaaacaagacaacttgaaacttgccgatctcaacaaatct 4724449  T

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Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 10623540 - 10623451
Alignment:
Q  50 aaagcagcaagcataaaactctttcaagcatgaagtaccagcgtgcaagcaaataagacaacttgaaaccggtagatctcaacaaatctg 139  Q
    |||||||||||||| || ||||||| |||||||| |||||  ||||| ||| | |||||||||||||||| | |||||||||||||||||    
T  10623540 aaagcagcaagcatgaagctctttcgagcatgaaataccaatgtgcaggcagacaagacaacttgaaacctgcagatctcaacaaatctg 10623451  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 3008703 - 3008831
Alignment:
Q  51 aagcagcaagcataaaactctttcaagcatgaagtaccagcgtgcaagcaaataagacaacttgaaaccggtagatctcaacaaatct-gaaatatca-- 147  Q
    |||||||||||||||| ||||||||||||||||||||||  ||| | ||| | || || ||||||||||   |||||||||||||||| |||| ||||      
T  3008703 aagcagcaagcataaagctctttcaagcatgaagtaccaatgtgaaggcagacaatacgacttgaaacctacagatctcaacaaatctggaaacatcata 3008802  T
Q  148 -agtcgaagaagtcaagacaccaaacaca 175  Q
     |||||||||| ||| | |||||||||||    
T  3008803 gagtcgaagaaatcaggccaccaaacaca 3008831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 29333876 - 29333803
Alignment:
Q  47 aataaagcagcaagcataaaa-ctctttcaagcatgaagtaccagcgtgcaagcaaataagacaacttgaaacc 119  Q
    |||||||||| |||||||||| |||||||||| || ||||||| | ||| ||||||| |  |||||||||||||    
T  29333876 aataaagcagaaagcataaaagctctttcaagtataaagtaccggagtgtaagcaaacaccacaacttgaaacc 29333803  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 28180442 - 28180485
Alignment:
Q  54 cagcaagcataaaactctttcaagcatgaagtaccagcgtgcaa 97  Q
    |||||| |||||||||||||| ||||||||||||||||||||||    
T  28180442 cagcaaacataaaactctttcgagcatgaagtaccagcgtgcaa 28180485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 33012635 - 33012589
Alignment:
Q  266 ttttatagacttcttaaacaatgtctttagaacacttgttaacaaaa 312  Q
    ||||||||| |  |||||||||||||||||||||||||||| |||||    
T  33012635 ttttatagattctttaaacaatgtctttagaacacttgttagcaaaa 33012589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 43168611 - 43168723
Alignment:
Q  55 agcaagcataaaactctttcaagcatgaagtaccagcgtgcaagcaaataagacaacttgaaaccggtagatctcaacaaatctg-aaatatca---agt 150  Q
    |||||||||||| ||||||| ||||  ||||| | ||||| ||||||| || || |||||||||| | ||||||||||| ||||| ||| ||||   |||    
T  43168611 agcaagcataaagctctttcgagcacaaagtatctgcgtgtaagcaaacaaaacgacttgaaacctgcagatctcaacagatctgcaaacatcagagagt 43168710  T
Q  151 cgaagaagtcaag 163  Q
    |||||||||||||    
T  43168711 cgaagaagtcaag 43168723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 38011484 - 38011598
Alignment:
Q  20 caaaatccaagtgccaattgctctacgaataaagcagcaagcataaaa-ctctttcaagcatgaagtaccagcgtgcaagcaaataagacaacttgaaac 118  Q
    |||||||||||||||||  ||||   |||  ||||||||||||||||| ||||||| ||||  || |||||| ||| | || ||  ||||||||||||||    
T  38011484 caaaatccaagtgccaacagctccctgaactaagcagcaagcataaaagctctttcgagcaccaaataccagagtgtaggcgaacgagacaacttgaaac 38011583  T
Q  119 cggtagatctcaaca 133  Q
    | | |||||||||||    
T  38011584 ctgcagatctcaaca 38011598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 18402873 - 18402938
Alignment:
Q  185 ttcaaaagagacctgtaaaaacttagatcgatagataagtccaatacgttagtaatcagacccttt 250  Q
    ||||||| | || ||||| |||| |||||||| ||| ||| |||||||||||||| ||||||||||    
T  18402873 ttcaaaacaaacatgtaagaactcagatcgatggatgagttcaatacgttagtaaccagacccttt 18402938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 276 - 309
Target Start/End: Original strand, 54260041 - 54260074
Alignment:
Q  276 ttcttaaacaatgtctttagaacacttgttaaca 309  Q
    ||||||||||||||||||||||||||| ||||||    
T  54260041 ttcttaaacaatgtctttagaacactttttaaca 54260074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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