View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6927_low_11 (Length: 442)
Name: NF6927_low_11
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6927_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 209 - 346
Target Start/End: Complemental strand, 45143064 - 45142927
Alignment:
| Q |
209 |
caattgttattatggagaagtgtcttatgtgatctataatggactgacgtttgaaaatcgatcaaaacttccaccacagataagacagtcatttaatcag |
308 |
Q |
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| T |
45143064 |
caattgttattatggagaagtgtcttatgtgatctataatggactgacgtttgaaaatcgatcaaaacttccaccacagataagacagtcatttaatcag |
45142965 |
T |
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| Q |
309 |
tgttaattcaaaaataaacaagagaaaatgaatattag |
346 |
Q |
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| T |
45142964 |
tgttaattcaaaaataaacaagagaaaatgaatattag |
45142927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 45143186 - 45143102
Alignment:
| Q |
16 |
ggccaccactgattgtgctgaccactaggtcaacaatgatacaaaatctctaaaattgatgcctgtacgagagacaatcaccatg |
100 |
Q |
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| T |
45143186 |
ggccaccactgattgtgctgaccactaggtcaacaatgatacaaaatctctaaaattgatgcctgtacgagagacaatcaccatg |
45143102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 343 - 434
Target Start/End: Complemental strand, 45142892 - 45142801
Alignment:
| Q |
343 |
ttagagtttcaaacaatttccaagcatttgttttttgtagaccgtgttaaacacttttccactctagaagctggatgaaactataaacacga |
434 |
Q |
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| T |
45142892 |
ttagagtatcaaacaatttccaagcatttgtttgttgtagaccgtgttaaacacttttccactctagaagccggatgaaactataaacacga |
45142801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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