View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6927_low_15 (Length: 377)
Name: NF6927_low_15
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6927_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 9161635 - 9161991
Alignment:
| Q |
1 |
agaattagttgcattatcatacttcattttccatcacaatagttgcatgcagatttcttttctatgtctattgtgaaatgattccatgactctgagcagt |
100 |
Q |
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| T |
9161635 |
agaactagttgcattatcatacttcattttccatcacaatagttgcatgcagatttcttttctatgtctattgtgaaatgattccatgactctgagcagt |
9161734 |
T |
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| Q |
101 |
tcttatgcttcttaaagcgaggaggtttgcactattagagactgtgggtataggggtagaaactgcatgcnnnnnnncaagaaattaactggtttaagct |
200 |
Q |
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| T |
9161735 |
tcttatgcttcttaaagcgaggaggtttgcactattagagactgtgggtataggggtagaaactgcatgctttttttcaagaaattaactggtttaagct |
9161834 |
T |
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| Q |
201 |
gtttatgcaaatgcattagtgtaacaccatctccatctccaataaaacactctgaatctcttttgtcgagaatggcaaactcataaatggtcaacaactc |
300 |
Q |
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| T |
9161835 |
gtttatgcaaatgcattagtgtaacaccatctccatctccaataaaacactctgaatctcttttgtcgagaatggcaaactc--aaatggtcaacaactc |
9161932 |
T |
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| Q |
301 |
accataattgataccaaactcatcatggcatcttccaacacaatcaatcactgggtatt |
359 |
Q |
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| T |
9161933 |
accataattgataccaaactcatcatggcatcttccaacacaatcaatcactgggtatt |
9161991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 9149001 - 9149078
Alignment:
| Q |
178 |
caagaaattaactggtttaagctgtttatgcaaatgcattagtgtaacaccatctccatctccaataaaacactctgaa |
256 |
Q |
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| T |
9149001 |
caaggaattaactggtataagttgtctatgcaa-tggattagtgtaacaccatctccgtgtctaatacaacactctgaa |
9149078 |
T |
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