View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6927_low_16 (Length: 353)

Name: NF6927_low_16
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6927_low_16
NF6927_low_16
[»] chr5 (1 HSPs)
chr5 (19-316)||(40192130-40192427)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 40192427 - 40192130
Alignment:
Q  19 aaaaatatcatatacacaaacaagaagaacaagaagacgggtttcaatacaatagaatagaatacaacttctttgtcaatgtctaagaacatagccatat 118  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40192427 aaaaatatcatatgcacaaacaagaagaacaagaagagaggtttcaatagaatagaatagaatacaacttctttgtcaatgtctaagaacatagccatat 40192328  T
Q  119 ctcaatggcaaaagtgattcaagaaacaaccaagaagatgacacaactctgcaggaaaattgttcaggttgacgttaaatatggtatgcttcaaagggta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40192327 ctcaatggcaaaagtgattcaagaaacaaccaagaagatgacacaactctgcaggaaaattgttcaggttgacgttaaatatggtatgcttcaaagggta 40192228  T
Q  219 tcttttgttggtcagttttttaggttcatttggaataaacttatggtttgttctgttggaagatcaccagctcaatatagaagattatctcttaatca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40192227 tcttttgttggtcagttttttaggttcatttggaataaacttatggtttgttctgttggaagatcaccagctcaatatagaagattatctcttaatca 40192130  T

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