View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6927_low_19 (Length: 314)

Name: NF6927_low_19
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6927_low_19
NF6927_low_19
[»] chr1 (2 HSPs)
chr1 (19-314)||(5909871-5910166)
chr1 (21-283)||(5914370-5914629)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 5909871 - 5910166
Alignment:
Q  19 attcgggacatgttggaacttcgctttcttcttcttcgtcgatccattcgggaaataaatctttccagttgaaaaattttgatactttatcgaaattaat 118  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5909871 attcaggacatgttggaacttcgctttcttcttcttcgtcgatccattcgggaaataaatctttccagttgaaaaattgtgatactttatcgaaattaat 5909970  T
Q  119 tggtattatttctccatgtatgttccattcacttatgtcgtcgtcttcattcatgtttaccattccaattttcatttctttaccaannnnnnngcctaaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       |||||||    
T  5909971 tggtattatttctccatgtatgttccattcacttatgtcgtcgtcttcgttcatgtttaccattccaattttcatttctttaccaattttttcgcctaaa 5910070  T
Q  219 aaatttggtacttctatcttagttccgtttgcctttggcttccatgattttggttttggtaattcctctaacacccctttaatttgtatgcctttt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5910071 aaatttggtacttctatcttagttccgtttgcctttggcttccatgattttggttttggtaattcctctaacacccctttaatttgtatgcctttt 5910166  T

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Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 21 - 283
Target Start/End: Original strand, 5914370 - 5914629
Alignment:
Q  21 tcgggacatgttggaacttcgctttcttcttcttcgtcgatccattcgggaaataaatctttccagttgaaaaattttgatactttatcgaaattaattg 120  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  5914370 tcgggacatgttggaacatcgctttcttcttcttcgtcgatccattcgggaaataaatctgtccagttgaaaaattgtgatactttgtcgaaattaattg 5914469  T
Q  121 gtattatttctccatgtatgttccattcacttatgtcgtcgtcttcattcatgtttaccattccaattttcatttctttaccaannnnnnngcctaaaaa 220  Q
    ||||| |||||||||||| ||||||||| ||||  ||||||||||| | |||||| |||||||||||||| ||| | ||||| |       |||||||||    
T  5914470 gtattgtttctccatgtacgttccattcgcttacatcgtcgtcttcgtccatgttcaccattccaattttaattcccttaccgattttttcgcctaaaaa 5914569  T
Q  221 atttggtacttctatcttagttccgtttgcctttggcttccatgattttggttttggtaattc 283  Q
    | |||||||||||||||||||||| ||   |||||| |||| |||||||| ||||||||||||    
T  5914570 acttggtacttctatcttagttccatt---ctttgggttccttgattttgcttttggtaattc 5914629  T

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