View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6927_low_21 (Length: 304)
Name: NF6927_low_21
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6927_low_21 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 304
Target Start/End: Original strand, 8139028 - 8139323
Alignment:
| Q |
10 |
attattcttccgtaacagttctaaagtttctgtggctctcatctaattgttt-atgtatgcactatcagttaatacatggctgactttggaatgatgtct |
108 |
Q |
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| T |
8139028 |
attattcttccgtaacagttctaaagtttctgtggctctcatctaattgttttatgtatgcactatcagttaatacatggctgactttggaattatgtct |
8139127 |
T |
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| Q |
109 |
cagttttgtataaatgatgaatctatgctttggaatgatggatgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaa |
208 |
Q |
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| T |
8139128 |
cagttttgtataaatgatgaatctatgctttggaatgatggatgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaa |
8139227 |
T |
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| Q |
209 |
aatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgtt |
304 |
Q |
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| T |
8139228 |
aatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttctatgaatgatgaatctgtgtttttgaagcgcatctgtt |
8139323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 151 - 286
Target Start/End: Complemental strand, 7503107 - 7502967
Alignment:
| Q |
151 |
tgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatct---ttctcatttatttaaaaatcttgatcatttattt |
247 |
Q |
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| T |
7503107 |
tgtcccagttttttatgtttcttgatcattaagtaaaaatcctgatcatttatgtaaaaatatcattaatcatttatgtaaaaatattgatcatttattt |
7503008 |
T |
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| Q |
248 |
ctgcaatc--atgatcatttccatgaatgatgaatctgtgt |
286 |
Q |
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| T |
7503007 |
ctgcaatcatatgatcacttctatgaatgatgaatctgtgt |
7502967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 204 - 304
Target Start/End: Complemental strand, 7499701 - 7499602
Alignment:
| Q |
204 |
gtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgt |
303 |
Q |
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| T |
7499701 |
gtaaaaatcttaatcatttatctaaaaatctttatcatttatttctgcaatcatgatcacttctatgaatgatgaatctgtg-ttttgaagctcatctgt |
7499603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 7499735 - 7499658
Alignment:
| Q |
149 |
gatgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatctttctcatttattt |
226 |
Q |
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| T |
7499735 |
gatgtctcagttttttatgtttctagatcatgaagtaaaaatcttaatcatttatctaaaaatctttatcatttattt |
7499658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 7499834 - 7499722
Alignment:
| Q |
10 |
attattcttccgtaacagttctaaagtttctgtggctctca-------tctaattgtttatgtatgcactatcagttaatacatggctgactttggaatg |
102 |
Q |
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| T |
7499834 |
attattcttcaataacagttctaaagtttctgtggctctgaagtctgatctaattgtttatatatgcactatctgttaatacatggctggttttagaatg |
7499735 |
T |
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| Q |
103 |
atgtctcagtttt |
115 |
Q |
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| T |
7499734 |
atgtctcagtttt |
7499722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 7503160 - 7503119
Alignment:
| Q |
244 |
atttctgcaatcatgatcatttccatgaatgatgaatctgtg |
285 |
Q |
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| T |
7503160 |
atttctgcaatcatgatcacttctatgaatgatgaatttgtg |
7503119 |
T |
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