View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6927_low_26 (Length: 250)

Name: NF6927_low_26

Description: NF6927

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6927_low_26

[»] chr4 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 151; E-Value: 5e-80

Query Start/End: Original strand, 1 - 243

Target Start/End: Complemental strand, 54848996 - 54848753

Alignment:

Q	1	aaaaattatgaatcctcaattaaaataacttttagttcatgaaagaagtaaatgagacaatttatcacctggttgaatcaaattggagatgtg---agaa	97	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	54848996	aaaaattatgaatcctcaattaaaataacttttagttcatgaaagaagtaaatgagacaatttatcacctggttgaatcaaattggagatgtgagaagaa	54848897	T

Q	98	catgtgtgtaaaagaccttgttgtacaatgtatttttcacatgatcatggannnnnnnnnnccaaggactaaattgggnnnnnnnnnnnnnncctcaagc	197	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	54848896	catgtgtgtaaaagaccttgttgtacgatgtatttttcacatgatcatgga--atttttttccaaggactaaattgggtttttcatttttttcctcaagc	54848799	T

Q	198	accacaattgatcttccctctattttatatgtgtgtgttcttctct	243	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	54848798	accacaattgatcttccctctattttatatgtgtgtgttcttctct	54848753	T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 39; E-Value: 0.0000000000004

Query Start/End: Original strand, 190 - 245

Target Start/End: Original strand, 35800899 - 35800956

Alignment:

Q	190	cctcaagcaccacaattgatcttccctctattt--tatatgtgtgtgttcttctctct	245	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35800899	cctcaaacaccacaattgatcttcactctattttatatatgtgtgtgttcttctctct	35800956	T

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