View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6927_low_3 (Length: 813)
Name: NF6927_low_3
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6927_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 664; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 21 - 797
Target Start/End: Original strand, 51023433 - 51024211
Alignment:
| Q |
21 |
actggtaggaagatcattattgacacttatggtggttggggtgcacatggtggtggtgctttctcaggaaaagacccaactaaggttgacaggagtggag |
120 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51023433 |
actggtaggaagatcatcattgacacttatggtggttggggtgcacatggtggtggtgctttctcaggaaaagacccaactaaggttgacaggagtggag |
51023532 |
T |
|
| Q |
121 |
cttacattgtgaggcaagctgctaagagcattgttgcaagtggacttgcaaggaggtgcattgtgcaagtgtcctatgctattggtgtgcctgaacctct |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51023533 |
cttacattgtgaggcaagctgctaagagcattgttgcaagtggacttgcaaggaggtgcattgtgcaagtctcctatgctattggtgtgcctgaacctct |
51023632 |
T |
|
| Q |
221 |
gtctgtgtttgttgacacgtatggtacagggaagatccctgataaggagatcctgaatattgtgaagcagaactttgatttcaggcctgggatgatctct |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51023633 |
gtctgtgtttgttgacacgtatggtacagggaagatccctgataaggagatcctgaatattgtgaagcagaactttgatttcaggcctgggatgatctct |
51023732 |
T |
|
| Q |
321 |
atcaaccttgatctcttgaggggtggcaatggcaggtttttgaagactgctgcttatggacattttggtagggaagatgctgacttcacatgggcagtgg |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
51023733 |
atcaaccttgatctcttgaggggtggcaatggcaggtttttgaagactgctgcttatggacattttggtagggaagatgctgacttcacatgggaagtgg |
51023832 |
T |
|
| Q |
421 |
tgaagcctcttaaatgggagaaggcctaagttacctctattctaggagttctgaaccttagaatatcttactaatcttcaaagcttttttaccctccgct |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51023833 |
tgaagcctcttaaatgggagaaggcctaagttacctctattctaggagttctgaaccttagaatatcttactaatcttcaaagcttttttaccctccgct |
51023932 |
T |
|
| Q |
521 |
tgtctatcttagnnnnnnnnnnnnnnnnnnnnacattagcaatataaaaagtgctctcagtttgtatgttcaatgcaatgaatgcatttcacattatatc |
620 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
51023933 |
tgtctatcttag-tttttgttttttcttttttacattagcaatataaaaagtgctctcagtttttatgttcaatgcaatgaatgcatttcacattatatc |
51024031 |
T |
|
| Q |
621 |
aatatcaaagagagtattctatccattatatgattcttctgtcgatgaactcgtgcaattcacccctcaaatgtttatttttgggcaaactttgtttgaa |
720 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51024032 |
aatatcaaagggagtattctatccattatatgattcttctgtcgatgaactcatgcaattcacccctcaaatgtttatttttgggcaaactttgtttgaa |
51024131 |
T |
|
| Q |
721 |
ga--aagtacactcgttcagtactatttgtacatacccggcattacttgtttgcagtatatgggt-aaaatgttctgatg |
797 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |
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|
| T |
51024132 |
gaataagtacactcgttcagtactatttgtacatacccggtattacctgtttgcagtatatgggtaaaaatgttctgatg |
51024211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 30 - 427
Target Start/End: Complemental strand, 20525484 - 20525087
Alignment:
| Q |
30 |
aagatcattattgacacttatggtggttggggtgcacatggtggtggtgctttctcaggaaaagacccaactaaggttgacaggagtggagcttacattg |
129 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||| || || |||||||||||||||||||||| |
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|
| T |
20525484 |
aagatcatcatcgatacttatggtggttggggtgcacacggtggtggtgctttctccggtaaagatccaacaaaagtcgacaggagtggagcttacattg |
20525385 |
T |
|
| Q |
130 |
tgaggcaagctgctaagagcattgttgcaagtggacttgcaaggaggtgcattgtgcaagtgtcctatgctattggtgtgcctgaacctctgtctgtgtt |
229 |
Q |
| |
|
|||| |||||||| ||||| |||||||| | |||||||| || ||||||||||||||||| ||||||||||| ||||| || || || |||||||||| |
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|
| T |
20525384 |
tgagacaagctgcaaagagtattgttgctaacggacttgctagaaggtgcattgtgcaagtttcctatgctatcggtgttccagagccattgtctgtgtt |
20525285 |
T |
|
| Q |
230 |
tgttgacacgtatggtacagggaagatccctgataaggagatcctgaatattgtgaagcagaactttgatttcaggcctgggatgatctctatcaacctt |
329 |
Q |
| |
|
|||||| | || ||||| || ||||||||||||||||| ||||| || ||||||||| | | |||||| |||||||| || ||||||||||| |||||| |
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|
| T |
20525284 |
tgttgattcttacggtaccggaaagatccctgataaggaaatccttaacattgtgaaggaaacctttgacttcaggccaggaatgatctctattaacctt |
20525185 |
T |
|
| Q |
330 |
gatctcttgaggggtggcaatggcaggtttttgaagactgctgcttatggacattttggtagggaagatgctgacttcacatgggcagtggtgaagcc |
427 |
Q |
| |
|
||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| || |||||||| |
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|
| T |
20525184 |
gatcttaagaggggtggaaataacaggtttttgaagactgctgcttatggacattttggtagagatgatgctgatttcacatgggaggttgtgaagcc |
20525087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 8e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 30 - 443
Target Start/End: Original strand, 45208438 - 45208851
Alignment:
| Q |
30 |
aagatcattattgacacttatggtggttggggtgcacatggtggtggtgctttctcaggaaaagacccaactaaggttgacaggagtggagcttacattg |
129 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||||| || ||||| ||||| ||||||||||| |||||||| ||||||||||| ||||| || || ||| |
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|
| T |
45208438 |
aagattataattgatacttatggtggctggggtgctcacggtggaggtgccttctcaggaaaggacccaaccaaggttgacagaagtggtgcctatgttg |
45208537 |
T |
|
| Q |
130 |
tgaggcaagctgctaagagcattgttgcaagtggacttgcaaggaggtgcattgtgcaagtgtcctatgctattggtgtgcctgaacctctgtctgtgtt |
229 |
Q |
| |
|
| ||||| || || ||||| || || || | || ||||| | || |||||||| ||||| || ||||| |||||||||||||||||| |||| || || |
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|
| T |
45208538 |
taaggcaggcagccaagagtatagtggccaacggtcttgctcgcagatgcattgttcaagtttcatatgccattggtgtgcctgaacctttgtcggtctt |
45208637 |
T |
|
| Q |
230 |
tgttgacacgtatggtacagggaagatccctgataaggagatcctgaatattgtgaagcagaactttgatttcaggcctgggatgatctctatcaacctt |
329 |
Q |
| |
|
|||||||| ||||| || || ||||| ||||| | |||||| || | ||||||||| |||| || || ||||| ||||| |||||| | || ||| | |
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|
| T |
45208638 |
tgttgacagttatggaactggaaagattcctgacagggagattcttcaaattgtgaaggagaatttcgacttcagacctggaatgatcaccataaacttg |
45208737 |
T |
|
| Q |
330 |
gatctcttgaggggtggcaatggcaggtttttgaagactgctgcttatggacattttggtagggaagatgctgacttcacatgggcagtggtgaagcctc |
429 |
Q |
| |
|
|| || |||||||||||| |||||||| | ||||| |||||||||||||| ||||| ||||| ||| ||||||||||||||| ||| ||||| || | |
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|
| T |
45208738 |
gaccttaagaggggtggcaacagcaggtttcttaagacagctgcttatggacactttggaagggatgatcctgacttcacatgggaagttgtgaaaccac |
45208837 |
T |
|
| Q |
430 |
ttaaatgggagaag |
443 |
Q |
| |
|
| || ||||||||| |
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|
| T |
45208838 |
tcaagtgggagaag |
45208851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 41213529 - 41213647
Alignment:
| Q |
21 |
actggtaggaagatcattattgacacttatggtggttggggtgcacatggtggtggtgctttctcaggaaaagacccaactaaggttgacaggagtggag |
120 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| ||||| || ||||| ||||| || || |||||||| ||||| || || ||||| | |
|
|
| T |
41213529 |
actggtaggaagatcattattgacacctatggtggctggggtgctcatggaggaggtgccttctctggcaaggacccaaccaaggtcgatagaagtgggg |
41213628 |
T |
|
| Q |
121 |
cttacattgtgaggcaagc |
139 |
Q |
| |
|
| || ||||| |||||||| |
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|
| T |
41213629 |
catatattgttaggcaagc |
41213647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 27718386 - 27718265
Alignment:
| Q |
21 |
actggtaggaagatcattattgacacttatggtggttggggtgcacatggtggtggtgctttctcaggaaaagacccaactaaggttgacaggagtggag |
120 |
Q |
| |
|
||||| |||||||| |||||||| || ||||||||||||||||| |||||||| ||||| ||||||||||| || ||||| ||||| ||||||||||| | |
|
|
| T |
27718386 |
actggaaggaagattattattgatacctatggtggttggggtgctcatggtggaggtgccttctcaggaaaggatccaaccaaggtggacaggagtggtg |
27718287 |
T |
|
| Q |
121 |
cttacattgtgaggcaagctgc |
142 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
27718286 |
cttacattgttaggcaagctgc |
27718265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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