View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6927_low_33 (Length: 239)
Name: NF6927_low_33
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6927_low_33 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6922015 - 6922238
Alignment:
| Q |
1 |
attggtggtatggatcggtaagggttatagaatgtgagttactctccagcaaacgagagatgggcactgccctacattctcccgaaccttcagacatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6922015 |
attggtggtatggatcggtaagggttatagaatgtgagttactctccagcaaacgagagatgggcactgccctacattctcccgaaccttcagacatgtt |
6922114 |
T |
|
| Q |
101 |
tgagaggattgcgaggtgacttgttcgtgtagattgcttcttaaggtgcattttggcaaagtcgggatccaagattagggttttccaagacttggaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6922115 |
tgagaggattgcgaggtgacttgttcgtgtagattgcttcttaaggtgcattttggcaaagtcgggatccaagattagggttttccaagacttggaaaca |
6922214 |
T |
|
| Q |
201 |
cacttcatcgacattagagatttt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
6922215 |
cacttcatcgacattagagatttt |
6922238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6948545 - 6948768
Alignment:
| Q |
1 |
attggtggtatggatcggtaagggttatagaatgtgagttactctccagcaaacgagagatgggcactgccctacattctcccgaaccttcagacatgtt |
100 |
Q |
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|||||||||| |||||||||||||| | |||||||||||||||||||||||| ||||||||||| |||| |||||||||| ||||||||| ||||||||| |
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| T |
6948545 |
attggtggtaaggatcggtaagggtgagagaatgtgagttactctccagcaagcgagagatggggactgtcctacattctgccgaacctttagacatgtt |
6948644 |
T |
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| Q |
101 |
tgagaggattgcgaggtgacttgttcgtgtagattgcttcttaaggtgcattttggcaaagtcgggatccaagattagggttttccaagacttggaaaca |
200 |
Q |
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| T |
6948645 |
tgagagaaatgcgaggtgactcattggtgtagattgcttcttaaggtgcattttggcgaagtagggatcggatattagggttttccatgacttgcaaaca |
6948744 |
T |
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| Q |
201 |
cacttcatcgacattagagatttt |
224 |
Q |
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||||||||| |||||||||||||| |
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| T |
6948745 |
cacttcatcaacattagagatttt |
6948768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 6935994 - 6936076
Alignment:
| Q |
127 |
gtgtagattgcttcttaaggtgcattttggcaaagtcgggatccaagattagggttttccaagacttggaaacacacttcatc |
209 |
Q |
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||||||||||||||||| ||||| ||||| | ||||| ||||| |||||||||||||||| |||||| |||||||||||||| |
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| T |
6935994 |
gtgtagattgcttcttatggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaaacacacttcatc |
6936076 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1986623 - 1986844
Alignment:
| Q |
1 |
attggtggtatggatcggtaagggttatagaatgtgagttactctccagcaaacgagagatgggcactgccctacattctcccgaaccttcagacatgtt |
100 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||| |||| || |||||||| |||| | ||||||||||||||||||||| ||| ||||| |
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| T |
1986623 |
attggtggtaaggatcggtaagggtgatagaatgtgagttactcaccagtaagcgagagataggcatt-ccctacattctcccgaacctttagatatgtt |
1986721 |
T |
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| Q |
101 |
tgagaggattgcgaggtgacttgttcgtgtagattgcttcttaaggtgcattttggcaaagtcgggatccaagattagggttttccaagacttggaaaca |
200 |
Q |
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|||||| | |||| ||||||| || ||||||||||||| ||||||||||||||||| |||| ||||| | |||||||||||||| |||||| ||||| |
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| T |
1986722 |
tgagagaaatgcggggtgactcattggtgtagattgctt-ttaaggtgcattttggcgaagtagggatgggatattagggttttccatgacttgcaaaca |
1986820 |
T |
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| Q |
201 |
cacttcatcgacattagagatttt |
224 |
Q |
| |
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||||||||| |||||||||||||| |
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| T |
1986821 |
cacttcatcaacattagagatttt |
1986844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 209
Target Start/End: Original strand, 13417640 - 13417804
Alignment:
| Q |
45 |
tccagcaaacgagagatgggcactgccctacattctcccgaaccttcagacatgtttgagaggattgcgaggtgacttgttcgtgtagattgcttcttaa |
144 |
Q |
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|||||||||||||||||||| ||||||||||| ||| ||||||||| ||||| ||||||| | ||| ||||| | |||||||||||||| |||||| |
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| T |
13417640 |
tccagcaaacgagagatgggtactgccctacaatctaccgaaccttgggacatttttgagaaaagtgctaggtgtgtcattcgtgtagattgcctcttaa |
13417739 |
T |
|
| Q |
145 |
ggtgcattttggcaaagtcgggatccaagattagggttttccaagacttggaaacacacttcatc |
209 |
Q |
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||||||||||| | ||| ||||| ||| |||||||||||| |||||| | |||||||||||| |
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| T |
13417740 |
ggtgcattttgacgaagagtggatcagagaatagggttttccacgacttgcatacacacttcatc |
13417804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 15572625 - 15572735
Alignment:
| Q |
45 |
tccagcaaacgagagatgggcactgccctacattctcccgaaccttcagacatgtttgagaggattgcgaggtgacttgttcgtgtagattgcttcttaa |
144 |
Q |
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|||| |||||||||| | || ||||||||||| ||||| |||||||||||| ||| || || ||||| || ||| | |||| ||||| |||||||||| |
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| T |
15572625 |
tccaacaaacgagaggtcggtactgccctacaatctccggaaccttcagacttgtctgtgaaaattgcaagatgagtcattcgcgtagaatgcttcttaa |
15572724 |
T |
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| Q |
145 |
ggtgcattttg |
155 |
Q |
| |
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||||||||||| |
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| T |
15572725 |
ggtgcattttg |
15572735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 18515576 - 18515624
Alignment:
| Q |
47 |
cagcaaacgagagatgggcactgccctacattctcccgaaccttcagac |
95 |
Q |
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| T |
18515576 |
cagcaaacgagaaatgggtactgctctacaatctccggaaccttcagac |
18515624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 161317 - 161094
Alignment:
| Q |
1 |
attggtggtatggatcggtaagggttatagaatgtgagttactctccagcaaacgagagatgggcactgccctacattctcccgaaccttcagacatgtt |
100 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||| || || ||||| ||||||||||||||| | ||| |||| || || ||||||||| || |||| |
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| T |
161317 |
attggtggtaaggatcagtaagggtgatagaactcgaagaacactccatcaaacgagagatgggtgcagccatacaatcaccagaaccttcaaacttgtt |
161218 |
T |
|
| Q |
101 |
tgagaggattgcgaggtgacttgttcgtgtagattgcttcttaaggtgcattttggcaaagtcgggatccaagattagggttttccaagacttggaaaca |
200 |
Q |
| |
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|||||| | |||||||| | ||| ||||||||| ||||||| |||||||||| | ||| | ||||| ||||||||||||||||||||||| ||||| |
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| T |
161217 |
tgagagaaaagcgaggtgtgtcattcctgtagattgtttcttaaagtgcattttgacgaagactggatcggagattagggttttccaagacttgcaaaca |
161118 |
T |
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| Q |
201 |
cacttcatcgacattagagatttt |
224 |
Q |
| |
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||||||||| ||| ||||||||| |
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| T |
161117 |
cacttcatctgcataagagatttt |
161094 |
T |
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