View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6927_low_35 (Length: 237)
Name: NF6927_low_35
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6927_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 8376729 - 8376525
Alignment:
| Q |
13 |
atgaagaagatggaagacatgaaagcgaagnnnnnnnnnttgggacaaagaaggtcattttgataaaataaaaaattgtttaaccagggtaaacaaaagt |
112 |
Q |
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| T |
8376729 |
atgaagaagatggaagacatgaaagcgaagaaaaaaaaattgggacaaagaaggtcattttgataaaataaaaaattgtttaaccagggtgaacaaaagt |
8376630 |
T |
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| Q |
113 |
gttaacggaaaaatatatatattcggatcaaaatatataattttggatttttgggaggattgtgtatgtcataaaacatgagaggagatggttgtaattt |
212 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8376629 |
gttaacggaaaaatatatat--tcggatcaaaatatataattttgcatttttgggaggattgtgtatgtcataaaacatgagaggagatggttgtaattt |
8376532 |
T |
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| Q |
213 |
gtgatat |
219 |
Q |
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||||||| |
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| T |
8376531 |
gtgatat |
8376525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 44895172 - 44895116
Alignment:
| Q |
56 |
gacaaagaaggtcattttgataaaataaaaaattgtttaaccagggtaaacaaaagt |
112 |
Q |
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||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
44895172 |
gacaaagaatgtcaatttgataaaataaaaaattgtttaacaaggctaaacaaaagt |
44895116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 14536397 - 14536340
Alignment:
| Q |
55 |
ggacaaagaaggtcattttgataaaataaaaaattgtttaaccagggtaaacaaaagt |
112 |
Q |
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||||||| || |||||||||||||||||||||||| |||| | ||| |||||||||| |
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| T |
14536397 |
ggacaaaaaatgtcattttgataaaataaaaaattatttagcaaggtcaaacaaaagt |
14536340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 8001316 - 8001275
Alignment:
| Q |
114 |
ttaacggaaaaatatatatattcggatcaaaatatataattttg |
157 |
Q |
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| T |
8001316 |
ttaacggaaaaatataaat--tcggatcaaaatatataattttg |
8001275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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