View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6927_low_36 (Length: 237)
Name: NF6927_low_36
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6927_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 54848979 - 54849201
Alignment:
| Q |
1 |
tgaggattcataatttttaaaacaaccacaataaatctacacctataacaggaatatcaaacacaacgacataaattggtgtcatgtcaggtattttgta |
100 |
Q |
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| T |
54848979 |
tgaggattcataatttttaaaacgaccacaataaatctacccctataacaggaatatcaaacacaacgacataaattggtgtcatgtcaggtattttgta |
54849078 |
T |
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| Q |
101 |
agtatcggagttacatagatctttccacgaccatacaatataatatgaaaagtcaaagttagatagagttgcttacccaaagaaataattcggtaggccc |
200 |
Q |
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| T |
54849079 |
agtgtcggagttacatagatctttccacgaccatacaatataacatgaaaagtcaaaggtagatagaggtgcttacccaaagaaataattcggtaggccc |
54849178 |
T |
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| Q |
201 |
accaatgagagcaaattgataat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
54849179 |
accaatgagagcaaattgataat |
54849201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 54820350 - 54820430
Alignment:
| Q |
145 |
atgaaaagtcaaagttaga--tagagttgcttacccaaagaaataattcggtaggcccaccaatgagagcaaattgataat |
223 |
Q |
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|||||||| |||||||||| ||| ||||||||||||||||||| | ||||||||| |||||||||||| ||||||||| |
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| T |
54820350 |
atgaaaaggcaaagttagagatagggttgcttacccaaagaaatttattggtaggcccgccaatgagagcatattgataat |
54820430 |
T |
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