View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6927_low_8 (Length: 488)
Name: NF6927_low_8
Description: NF6927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6927_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 17 - 477
Target Start/End: Complemental strand, 47573844 - 47573377
Alignment:
| Q |
17 |
atatagaaagcaactgcttcccaaaactaaaagtaccagtgaaacaacaatcggaacaataatcacaattattgtaagtgtcttctgttttcctttccct |
116 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47573844 |
atatagaaagcaaccgcttcccaaaactaaaagtaccagtgaaacaacaatcggaacaataatcacaattattgtaagtgtcttctgttttcctttccct |
47573745 |
T |
|
| Q |
117 |
gcataaatatcaaccttgtgtcattgtcaattttcattaagaaaaatgagaaaa-------tgattatgcagctaaaaaactaagatttcataaactggt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
47573744 |
gcataaatatcaaccttgtgtcattgtcaattttcattaagaaaaatgagaagaaaactgatgattatgcagctaaaaaactaagatttcataaactggt |
47573645 |
T |
|
| Q |
210 |
aagaattttatcttttgagctatttctcttgattgttgaaaataagaagaaaactgatattaggggtcactattatgcactacgaatatttgtgtatttg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47573644 |
aagaattttatcttttgagctatttctcttgattgttgaaaataagaagaaaactgatattaggggtcactattatgcactacgaatatttgtgtatttg |
47573545 |
T |
|
| Q |
310 |
attatgggtggaaatttcctgattcccctctcttctccaaataaacatctttgattgactggaaatatcttcttttatgcttttttcttcatttttctat |
409 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47573544 |
attaagggtggaaatttcctgattcccctctcttctccaaataaacatctttgattgactggaaatatcttcttttatgcttttttcttcatttttctat |
47573445 |
T |
|
| Q |
410 |
attccattctatcaaggaagtggttataatgtttagtgtcgttgaaggctataagacaacgtattctt |
477 |
Q |
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| T |
47573444 |
attccattctatcaaggaagtggttataatgtttagtgttgttgaaggctataagacaacgtattctt |
47573377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 47566957 - 47566714
Alignment:
| Q |
17 |
atatagaaagcaactgcttcccaaaactaaaagtaccagtgaaacaacaatcggaacaataatcacaattattgtaagtgtcttctgttttcctttccct |
116 |
Q |
| |
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|||||||| |||| || ||||||||| || ||| ||| |||||||||||||||||||||| || | || |||||||| ||||| |||||| ||||||| |
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| T |
47566957 |
atatagaatgcaattgtttcccaaaagtagaagcaccggtgaaacaacaatcggaacaatgataaaaaaaattgtaagcttcttcggttttcgtttccct |
47566858 |
T |
|
| Q |
117 |
gcataaatatca--accttgtgtcattgtcaattttcattaagaaaaatgagaaaatgattatgcagct-aaaaaactaagatttcataaactggtaaga |
213 |
Q |
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|||| ||||||| |||||||||||| ||| ||| | ||||||||||||||||||||||||| |||| ||||||| || ||||| ||||||||| ||| |
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| T |
47566857 |
gcatcaatatcagtaccttgtgtcatattcagtttcctttaagaaaaatgagaaaatgattatatagctaaaaaaacaaatatttcttaaactggttaga |
47566758 |
T |
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| Q |
214 |
attttatcttttgagctatttctcttgattgttgaaaataagaa |
257 |
Q |
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|||||||||||||||||||||||||| ||| |||||| ||||| |
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| T |
47566757 |
attttatcttttgagctatttctcttaattaatgaaaagaagaa |
47566714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 448
Target Start/End: Complemental strand, 47566411 - 47566305
Alignment:
| Q |
340 |
tcttctccaaataaacatctttgattgactggaaatatcttcttttatgcttttttcttcatttttctatattccattctatcaaggaagtggttataat |
439 |
Q |
| |
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|||||||| ||||||||||| |||| || || || ||| || |||| | | ||||| || ||||||||||||||||||||||||||||||||||| ||| |
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| T |
47566411 |
tcttctcctaataaacatctatgatggattgaaagtattttgttttct--tcttttcctcgtttttctatattccattctatcaaggaagtggttagaat |
47566314 |
T |
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| Q |
440 |
gtttagtgt |
448 |
Q |
| |
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|| |||||| |
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| T |
47566313 |
gtatagtgt |
47566305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 47583537 - 47583429
Alignment:
| Q |
17 |
atatagaaagcaactgcttcccaaaactaaaagtaccagtgaaacaacaatcggaacaataatcacaattattgtaagtgtcttctgttttcctttccct |
116 |
Q |
| |
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|||||||||||||| | ||| || ||||| || | ||||||||||||||| |||||| |||| ||| ||| || |||||||||||||||||||| ||| |
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| T |
47583537 |
atatagaaagcaacaacatccaaagactaacagcatcagtgaaacaacaattggaacaccaatctcaaatatagttagtgtcttctgttttccttttcct |
47583438 |
T |
|
| Q |
117 |
gcataaata |
125 |
Q |
| |
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|||| |||| |
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| T |
47583437 |
gcatcaata |
47583429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 458
Target Start/End: Complemental strand, 47571040 - 47570980
Alignment:
| Q |
398 |
tcatttttctatattccattctatcaaggaagtggttataatgtttagtgtcgttgaaggc |
458 |
Q |
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|||||||||| |||||||||||||||||||| |||||| ||||| |||||| | ||||||| |
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| T |
47571040 |
tcatttttctgtattccattctatcaaggaaatggttagaatgtatagtgttgctgaaggc |
47570980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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