View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6928_high_3 (Length: 318)
Name: NF6928_high_3
Description: NF6928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6928_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 8585177 - 8585478
Alignment:
| Q |
1 |
caaactatatatacactctcttcaatttcaaacctcattgatgagttgcgccatgcattcgtcaacaaatgatggttctaaaattgaaaataattcataa |
100 |
Q |
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| T |
8585177 |
caaactatatatacactctcttcaatttcaaacctcattgatgagttgcgccatgcattcgacaacaaatgatggttctaaaattgaaaataattcataa |
8585276 |
T |
|
| Q |
101 |
aatatatactacaaacacatgagtaactaaagttcattgaccagtctcaatgcatgtttggatgagcagtgagtttgacaaaattgtagtgatatcgtga |
200 |
Q |
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| T |
8585277 |
aatatatactacaaacacatgagtaactaaagttcattgaccagtctcaatgcatgtttggataagcagtgagtttgacaaaattgtagtgatatcgtga |
8585376 |
T |
|
| Q |
201 |
ttttgttaagctctaaagtgtaaaattataatgtgtcgctttgattctgtcaatatcaccgtgaatccaaacatacacttggttacatatcaataacaat |
300 |
Q |
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||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
8585377 |
ttttgttaagctctaaagtgtaaaattatgatgtgtcactttgattctgtcaatatcaccgtgaatccaaacatacacttcgttacataacaataacaat |
8585476 |
T |
|
| Q |
301 |
at |
302 |
Q |
| |
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|| |
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|
| T |
8585477 |
at |
8585478 |
T |
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