View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6928_high_4 (Length: 280)
Name: NF6928_high_4
Description: NF6928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6928_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 3029946 - 3030198
Alignment:
| Q |
17 |
aataagtggttaatgagtaaatcaagattgga---------aaccatcaactgaaattaaccatgaatgtcgatttggacacttgaaaataaaggttaat |
107 |
Q |
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| T |
3029946 |
aataggtgattaatgagtaaatcaagattggataacttgttaaccatcaactgaaattaaccatgaatgtcgatttggacacttgaaaataaaggttaat |
3030045 |
T |
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| Q |
108 |
tacgtttgaatttgtgcttaataaagttcattaaataaatggttacaaatttgcgacaccttatatttctcttagtcaaatctaaaactttgttgatcat |
207 |
Q |
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| T |
3030046 |
tacgtttgaatttgtgcttaataaagttcat----taaatggttacaaatttgcgacaccttatatt--tcttagtcaaatctaaaactttgttgatcat |
3030139 |
T |
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| Q |
208 |
gtgtctaaactgttttaaccatttaaaagttatcgaattttgttatcttaaactgatgt |
266 |
Q |
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| T |
3030140 |
gtgtctaaactgttttaaccatttaaaagttatcgaattttgttatcttaaactgatgt |
3030198 |
T |
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