View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6928_high_5 (Length: 250)
Name: NF6928_high_5
Description: NF6928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6928_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 8585129 - 8584891
Alignment:
| Q |
1 |
gaagcaagcgagactggtcatgcacaatccaaagctggagcattagcagctgagctagaagaaacaaagcaaaaacttgaaggatcaaaagaagaagcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8585129 |
gaagcaagcgagactggtcatgcacaatccaaagctggagcattagcagctgagctagaagaaacaaagcaaaaacttgaaggatcaaaagaagaagcta |
8585030 |
T |
|
| Q |
101 |
acttcttagcacaatgcatcaaatccctcaagaaagaacttgagcaaacaaagaaagaattggaagaaacaaaggcaagagagttgaagttgcttcaacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8585029 |
acttcttagcacaatgcatcaaatccctcaagaaagaacttgagcaaacaaagaaagaattggaagaaacaaaggcaagagagtggaagttgcttcaacg |
8584930 |
T |
|
| Q |
201 |
acgtgatattccagagacaaacgaagacatcaagttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8584929 |
acgtgatattccagagacaaacgaagacatcaagttcat |
8584891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University