View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6928_low_1 (Length: 511)
Name: NF6928_low_1
Description: NF6928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6928_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 15 - 495
Target Start/End: Complemental strand, 36263937 - 36263457
Alignment:
| Q |
15 |
ggacatcatgattactgtaccagttaactgttattgctccggtcactactaccagcataattcctcatacacattgaagactgaggatgaaaactacttc |
114 |
Q |
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| T |
36263937 |
ggacaccatgattactgtaccagttaactgttattgctccggtcactactaccagcataattcctcatacacattgaagactgaggatgaaaactacttc |
36263838 |
T |
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| Q |
115 |
actcttgccaataacacctatgagtcactcacaacatgtcaggctcttgatgctcagaatatatatggactcacaaacctcactgcagggctcaatatgc |
214 |
Q |
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| T |
36263837 |
actcttgccaataacacctatgagtcactcacaacatgtcaggctcttgatgctcagaatatatatggactcacaaacctcactgcagggctcaatatgc |
36263738 |
T |
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| Q |
215 |
atgttccactcaggtgtgcttgtcctacctccaagcaaattgaaaatggattcaagtatattcttacatacctggtctccgaaggagaatatcctgaact |
314 |
Q |
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| T |
36263737 |
atgttccactcaggtgtgcttgtcctacctccaagcaaattgaaaatggattcaagtatattcttacatacctggtctccgaaggagaatatcctgaact |
36263638 |
T |
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| Q |
315 |
tattgctgagatttttggggttgattcacagagcgtcttggatgcaaacaagcttattgaggatcaagttatcttctacttcactccattgatggtgcct |
414 |
Q |
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| T |
36263637 |
tattgctgagatttttggggttgattcacagagcgtcttggatgcaaacaagcttattgaggatcaagttatcttctacttcactccattgatggtgcct |
36263538 |
T |
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| Q |
415 |
ctaaaagacaagccacctaccaagatacaaaggacactaccgccaccatcaacaccactgtcaaaacctcatgtggaaaat |
495 |
Q |
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| T |
36263537 |
ctaaaagacaagccacctaccaagatacaaaggacactaccgccaccatcaacaccactgtcaaaacctcatgtggaaaat |
36263457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 329
Target Start/End: Complemental strand, 36256041 - 36255909
Alignment:
| Q |
203 |
ggctcaatatgcatgttccactcagg--tgtgcttgtcctacctccaagcaaattgaaaatggattcaagtatattcttacatacctggtctccgaagga |
300 |
Q |
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|||||||| ||||||||||||||||| |||||||| | | |||||||||||| |||||||||||||||||| ||||| ||||| ||||||| |||||| |
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| T |
36256041 |
ggctcaatttgcatgttccactcaggggtgtgcttggtccatctccaagcaaatggaaaatggattcaagtatcttcttgcatacttggtctctgaagga |
36255942 |
T |
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| Q |
301 |
----gaatatcctgaacttattgctgagatttt |
329 |
Q |
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| T |
36255941 |
gaatgaatatcctgaacttattgatgagctttt |
36255909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 138
Target Start/End: Complemental strand, 36256134 - 36256049
Alignment:
| Q |
55 |
ggtcactactaccagcataattcctcatacacattgaagactgaggatgaaaacta--cttcactcttgccaataacacctatgag |
138 |
Q |
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| T |
36256134 |
ggtcaccacttctagcacaattcctgatacatcttgaaaactgaggatgaaaactatacttcactcttgccaataacacctatgag |
36256049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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