View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6928_low_8 (Length: 226)
Name: NF6928_low_8
Description: NF6928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6928_low_8 |
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| [»] scaffold1121 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 6485460 - 6485262
Alignment:
| Q |
7 |
atcatcaaaacacaaacctataactaaaaacaacttctatctttagtttaaaattgtgaagattgggtttttagtcaaaatcaagtgggaataacttttc |
106 |
Q |
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| T |
6485460 |
atcatcaaaacacaaacctataactaaaaacaacttc-atctttagtttaaaattgtgaagattgggtttttagtcaaaatcaagtgggaataacttttc |
6485362 |
T |
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| Q |
107 |
cttatgtacaaacgcatttgcttgctttaaaggtgatccaactgtatacttacggtgatttactggatacgataatttaaccctaaatatacttacggtg |
206 |
Q |
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| T |
6485361 |
cttatgtacaaacacatttgcttgctttaaaggtgatccaactgtatacttacggtgatttaatggatacaataatttaaccctaaatatacttacggtg |
6485262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 6485274 - 6485232
Alignment:
| Q |
151 |
tatacttacggtgatttactggatacgataatttaaccctaaa |
193 |
Q |
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| T |
6485274 |
tatacttacggtgatttaaaggatacgataatttaaccctaaa |
6485232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 21592624 - 21592654
Alignment:
| Q |
5 |
acatcatcaaaacacaaacctataactaaaa |
35 |
Q |
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| T |
21592624 |
acatcatcaaaacacaaacctataactaaaa |
21592654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 22739977 - 22739939
Alignment:
| Q |
5 |
acatcatcaaaacacaaacctataactaaaaacaacttc |
43 |
Q |
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| T |
22739977 |
acatcatcaaaacacaaacctataactaaaaacaacttc |
22739939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 42369934 - 42369965
Alignment:
| Q |
4 |
gacatcatcaaaacacaaacctataactaaaa |
35 |
Q |
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| T |
42369934 |
gacatcatcaaaacacaaacctataactaaaa |
42369965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1121 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1121
Description:
Target: scaffold1121; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 409 - 379
Alignment:
| Q |
4 |
gacatcatcaaaacacaaacctataactaaa |
34 |
Q |
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| T |
409 |
gacatcatcaaaacacaaacctataactaaa |
379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 10491387 - 10491357
Alignment:
| Q |
4 |
gacatcatcaaaacacaaacctataactaaa |
34 |
Q |
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| T |
10491387 |
gacatcatcaaaacacaaacctataactaaa |
10491357 |
T |
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