View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6928_low_9 (Length: 225)
Name: NF6928_low_9
Description: NF6928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6928_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 20150782 - 20150919
Alignment:
| Q |
75 |
agtgactaaagattattatgacgaactagaacttgaaatatcctcgttgttgataggaacattgtttcaatcttttgttgtaaatttttgagagcaggtg |
174 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20150782 |
agtgactaaagattattacgacgaactagaccttgaaatatccttgttgtcga---gaacattgtttcaatcttttgttgtaaatttttgagagcaggtg |
20150878 |
T |
|
| Q |
175 |
tttccatccagatgtttagatgaattttaatctcttgatgt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20150879 |
tttccatccagatgtttagatgaattttaatctcttgatgt |
20150919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 12083323 - 12083402
Alignment:
| Q |
90 |
ttatgacgaactagaacttgaaatatcctcgttgttgat-aggaacattgtttcaatcttttgttgtaaatttttgagag |
168 |
Q |
| |
|
|||||| |||||||| |||||||||| || ||||| ||| ||||||||| ||| ||||||||||||||| || ||||||| |
|
|
| T |
12083323 |
ttatgaagaactagaccttgaaatatacttgttgtagattaggaacattatttgaatcttttgttgtaatttcttgagag |
12083402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 166
Target Start/End: Original strand, 38817958 - 38818036
Alignment:
| Q |
88 |
tattatgacgaactagaacttgaaatatcctcgttgttgataggaacattgtttcaatcttttgttgtaaatttttgag |
166 |
Q |
| |
|
|||||||| |||||||| |||||||| |||| |||| || ||||||||||||| |||||||||| |||| || ||||| |
|
|
| T |
38817958 |
tattatgaagaactagaccttgaaatttccttgttggagaaaggaacattgtttgaatcttttgtagtaatttcttgag |
38818036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University