View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6929_high_2 (Length: 410)
Name: NF6929_high_2
Description: NF6929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6929_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 22925129 - 22925529
Alignment:
| Q |
1 |
tacctcttctctataatgtttgccgatggatataagaactttgcaggatagcgtcactcgtacctgggatcccttgctgacccagccaagtgagtatcgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
22925129 |
tacctcttctctataatgtttgccgatggatataggaactttgcaggattgcgtcactcgtacctgggatcccttgctgacccagccaagtgagtatggc |
22925228 |
T |
|
| Q |
101 |
ttctcatgaggctctgtgggcagcttgaaataattcaccaannnnnnngacaccaagttcttggtgcttccattatcaattatcaggtcacatactttgt |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
22925229 |
ttctcatgaggctccgtgggcagcttgaaataattcaccaatttttttgacaccaagttctctgtgcttccattatcaattatcaggtcatatactttgt |
22925328 |
T |
|
| Q |
201 |
tattgtcggaacaacgagtcttaaataaatttttgtgttggccttcctctttggatgctagcaacgttcgttgaagcacaaagttcactctctcttcaga |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
22925329 |
tattgccggaacaacgagtcttaaataaatttttgtgttggccttcctctttggatgctagcaacgttcgttgaagcaaaaagttcactctctcttcaga |
22925428 |
T |
|
| Q |
301 |
atcttcctcagcaaactcaactcctaagtattcatcttcctcaccaagtttctcattatcatcatccaaaccttctgctacaccagcaaccctccttgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||||||||||||| |
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|
| T |
22925429 |
atcttcctcagcaaactcaactcctatgtattcatcttcctcatcaagtttctcattatcaccatctaaaccttctgctactccagcaaccctccttgat |
22925528 |
T |
|
| Q |
401 |
g |
401 |
Q |
| |
|
| |
|
|
| T |
22925529 |
g |
22925529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 3537631 - 3537231
Alignment:
| Q |
1 |
tacctcttctctataatgtttgccgatggatataagaactttgcaggatagcgtcactcgtacctgggatcccttgctgacccagccaagtgagtatcgc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
3537631 |
tacctcttctttataatgtttgccgatggatataggaactttgcaggacagcgtcactcgtacctgggatcccttgctgacccagccaagtgagtatggc |
3537532 |
T |
|
| Q |
101 |
ttctcatgaggctctgtgggcagcttgaaataattcaccaannnnnnngacaccaagttcttggtgcttccattatcaattatcaggtcacatactttgt |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
3537531 |
ttctcatgaggctccgtgggcagcttgaaataatccaccaatttttttgacaccaagttctccgtgcttccattatcaattatcaggtcacatactttgt |
3537432 |
T |
|
| Q |
201 |
tattgtcggaacaacgagtcttaaataaatttttgtgttggccttcctctttggatgctagcaacgttcgttgaagcacaaagttcactctctcttcaga |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
3537431 |
tattgacggaacaacgagtcttaaataaatttttgcgttggccttcctctttggatgctagcaacaatcgctgaagcacaaagttcactctctcttcaga |
3537332 |
T |
|
| Q |
301 |
atcttcctcagcaaactcaactcctaagtattcatcttcctcaccaagtttctcattatcatcatccaaaccttctgctacaccagcaaccctccttgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
3537331 |
atcttcctcagcaaactcaactcctatgtattcatcttcctcatcaagttgctcattatcatcatccaaaccttctgctactccagcaaccctccttgat |
3537232 |
T |
|
| Q |
401 |
g |
401 |
Q |
| |
|
| |
|
|
| T |
3537231 |
g |
3537231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 54 - 397
Target Start/End: Complemental strand, 2157528 - 2157185
Alignment:
| Q |
54 |
tcactcgtacctgggatcccttgctgacccagccaagtgagtatcgcttctcatgaggctctgtgggcagcttgaaataattcaccaannnnnnngacac |
153 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||| |
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|
| T |
2157528 |
tcactcgtacttgggatcccttgttgacccagccaagtgagtatggcttctcatgaggctccgtgggcagcttgaaataatccaccaatttttttgacac |
2157429 |
T |
|
| Q |
154 |
caagttcttggtgcttccattatcaattatcaggtcacatactttgttattgtcggaacaacgagtcttaaataaatttttgtgttggccttcctctttg |
253 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
2157428 |
caagttctccgtgcttccattatcaattatcaggtcacatactttgttattgacggaacaacgaatcttaaataaatttttgcattggccttcctctttg |
2157329 |
T |
|
| Q |
254 |
gatgctagcaacgttcgttgaagcacaaagttcactctctcttcagaatcttcctcagcaaactcaactcctaagtattcatcttcctcaccaagtttct |
353 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||| || |
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|
| T |
2157328 |
gatgctagcaacgttcgctgaagaacaaagttcactctctcttcataatcttcctcaacaaactcaactcctatgtattcatcttcctcatcaagttgct |
2157229 |
T |
|
| Q |
354 |
cattatcatcatccaaaccttctgctacaccagcaaccctcctt |
397 |
Q |
| |
|
|||||||| ||||||||||||||||||| | ||||||||||||| |
|
|
| T |
2157228 |
cattatcaccatccaaaccttctgctactctagcaaccctcctt |
2157185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2165362 - 2165314
Alignment:
| Q |
1 |
tacctcttctctataatgtttgccgatggatataagaactttgcaggat |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2165362 |
tacctcttctctataatgtttgccgatggatataggaactttgcaggat |
2165314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28252945 - 28253018
Alignment:
| Q |
1 |
tacctcttctctataatgtttgccgatggatataagaactttgcaggatagcgtcactcgtacctgggatccct |
74 |
Q |
| |
|
|||||||||| | ||||| ||||||||||| ||| ||||| |||||||||| || ||||| | || |||||||| |
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|
| T |
28252945 |
tacctcttctttgtaatgcttgccgatggagataggaactctgcaggatagtgttactcgaatctaggatccct |
28253018 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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