View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6929_high_3 (Length: 407)
Name: NF6929_high_3
Description: NF6929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6929_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 41822691 - 41823081
Alignment:
| Q |
18 |
agagttacaatagaacaagaagttgctgaagagttataaagttagtgatnnnnnnnncg----ttagaagaaacaaaaagttggtccaatgtttagcaat |
113 |
Q |
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| T |
41822691 |
agagttacaatagaacaagaagttgttgaagagttataaagttagtgataaaaaaaaaaaaaattagaagaaacaaaaagttggtccaatgtttagcaat |
41822790 |
T |
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| Q |
114 |
gtgatattaagagtatatcataaattaaaggcaagaaagcacatatatatatgctccatattaattatgtggtcaaatactgaccaacaaaataattgaa |
213 |
Q |
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| T |
41822791 |
gtgatattaatagtatatcataaattaaaggcaagaaagcacatatatatattctccatattaattatgtggtcaaatactgaccaacaaaataattgaa |
41822890 |
T |
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| Q |
214 |
tacgtatcaaggaataagcatcaaattaacaacagtgttggaaagataataaaatgctttaacagaatcaaaatgaatagaccctctcactcaaacaaag |
313 |
Q |
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| T |
41822891 |
tatgtatcaaggaataagcatcaaattaataacagtgatggaaagataataaaatgctttaacagaatcaaaatgaatagaccctctcactcaaacaaaa |
41822990 |
T |
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| Q |
314 |
aacacaaacgatataaaccatcagaatgaaaaggaaaggtgaaaagcatgtgaaaaataacagtaactcaaggttttgaaactccaaactc |
404 |
Q |
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| T |
41822991 |
aacacaaacgatataaaccatcagaatgaaaaggaaaggtgaaaagcatgtgaaaaataacagtaactcaaggttttgaaactccaaactc |
41823081 |
T |
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