View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6929_low_1 (Length: 723)

Name: NF6929_low_1
Description: NF6929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6929_low_1
NF6929_low_1
[»] chr8 (7 HSPs)
chr8 (469-708)||(3763168-3763407)
chr8 (87-343)||(3762047-3762301)
chr8 (469-708)||(5515013-5515241)
chr8 (17-87)||(3757656-3757726)
chr8 (600-701)||(39580354-39580455)
chr8 (586-701)||(15050328-15050441)
chr8 (587-701)||(10181803-10181917)
[»] chr2 (6 HSPs)
chr2 (469-704)||(9910313-9910548)
chr2 (548-701)||(6186542-6186695)
chr2 (548-701)||(14951108-14951261)
chr2 (540-701)||(38531622-38531782)
chr2 (586-701)||(27888515-27888630)
chr2 (586-701)||(1533041-1533156)
[»] chr3 (4 HSPs)
chr3 (469-704)||(31698933-31699168)
chr3 (586-701)||(46743175-46743290)
chr3 (620-701)||(52984633-52984713)
chr3 (653-701)||(52991655-52991703)
[»] chr5 (8 HSPs)
chr5 (469-701)||(40600072-40600293)
chr5 (469-702)||(42268993-42269215)
chr5 (548-694)||(12155986-12156132)
chr5 (587-701)||(26331367-26331481)
chr5 (586-695)||(26331707-26331816)
chr5 (599-694)||(24867389-24867484)
chr5 (547-708)||(11470563-11470725)
chr5 (550-615)||(42221195-42221260)
[»] chr1 (9 HSPs)
chr1 (469-701)||(2077609-2077831)
chr1 (548-701)||(10494537-10494690)
chr1 (548-694)||(14351462-14351608)
chr1 (540-697)||(11814351-11814510)
chr1 (588-700)||(29099279-29099391)
chr1 (586-701)||(27787029-27787144)
chr1 (586-671)||(26842258-26842343)
chr1 (469-507)||(11814604-11814642)
chr1 (586-683)||(25537469-25537564)
[»] chr7 (5 HSPs)
chr7 (469-697)||(43047880-43048097)
chr7 (540-704)||(24717743-24717907)
chr7 (586-701)||(32978959-32979074)
chr7 (587-694)||(21590826-21590933)
chr7 (545-659)||(26711907-26712022)
[»] scaffold0974 (1 HSPs)
scaffold0974 (469-703)||(2595-2818)
[»] chr6 (5 HSPs)
chr6 (540-701)||(10772594-10772754)
chr6 (540-701)||(30845122-30845283)
chr6 (548-701)||(24350458-24350611)
chr6 (548-701)||(24842887-24843039)
chr6 (606-694)||(10670327-10670415)
[»] chr4 (4 HSPs)
chr4 (549-694)||(52635391-52635535)
chr4 (586-694)||(45872871-45872979)
chr4 (644-701)||(55728389-55728446)
chr4 (662-701)||(12130357-12130396)
[»] scaffold0083 (1 HSPs)
scaffold0083 (625-700)||(2886-2963)
[»] scaffold0027 (1 HSPs)
scaffold0027 (666-708)||(2628-2670)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 8e-97; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 469 - 708
Target Start/End: Original strand, 3763168 - 3763407
Alignment:
Q  469 cttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagagaaac 568  Q
    ||||||||||||||||||||||  |||||||||||||||  ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||      
T  3763168 cttctatgagtttgttgttaatgaagttttcaaatacttacgtggtgagtttacctgtgcttaactgcgctttaactatgctcaactgcagaagagaaga 3763267  T
Q  569 aaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtt 668  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||    
T  3763268 aaagtgcagttatacaggtttttggtaggattgatgattattttggatgagttttgcaatggtttggcacaagacttgtttctgctattgctcaggtgtt 3763367  T
Q  669 tagactttgatttttggagatgactttttggttatgatgt 708  Q
    || ||||||||||||||||||||||||||||||| |||||    
T  3763368 taaactttgatttttggagatgactttttggttaagatgt 3763407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 87 - 343
Target Start/End: Original strand, 3762047 - 3762301
Alignment:
Q  87 gatttgacatatttttatgcgtttaactttcgatttttcaattatgtgtatcagctttcgatgatgattttcactttgtccaaaacttcnnnnnnnttta 186  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       ||||    
T  3762047 gatttgacatttttttatgcgtttaactttcgatttttcaattatgtgtaccagctttcgatgatgattttcactttgtccaaaacttcaaaaaaattta 3762146  T
Q  187 aaatattgtttgagatannnnnnnnnnnnnnnnnnnnaaagttcatgatcaatttaattagtcctatacattccttnnnnnnnnnnnttaatcctataca 286  Q
    |||||||||||||||||                     |||||||||||||||||||||| |||||||||||||||           |||||||||||||    
T  3762147 aaatattgtttgagatattttttacttttattttttc-aagttcatgatcaatttaattaatcctatacattcctt-aaatttttttttaatcctataca 3762244  T
Q  287 taaaactcataaagtatataaaacacaaatacattttcaattctgatgttggttttc 343  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3762245 taaaactcataaagtataaaaaacacaaatacattttcaattctgatgttggttttc 3762301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 469 - 708
Target Start/End: Complemental strand, 5515241 - 5515013
Alignment:
Q  469 cttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagagaaac 568  Q
    |||||||||||||||||||||| | |||||||||||||| |||||||| ||||| ||||||||||||||||           |||||||||||||||| |    
T  5515241 cttctatgagtttgttgttaattgggttttcaaatacttaggtggtgattttacttgtgcttaactgcgct-----------caactgcagaagagaagc 5515153  T
Q  569 aaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtt 668  Q
    ||||||||||||  |  ||||||||||||||||||| ||||||||||||  ||||||||| ||||| |||||||||||||| | ||||||||||||  ||    
T  5515152 aaagtgcggttacccgggtttttggtaggattgatggttattttggatggattttgcaacagtttggcacaagacttgtttctactattgctcaggcatt 5515053  T
Q  669 tagactttgatttttggagatgactttttggttatgatgt 708  Q
    |||| |||| |||||||||||||||||||||||| |||||    
T  5515052 tagaatttggtttttggagatgactttttggttacgatgt 5515013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 3757656 - 3757726
Alignment:
Q  17 attaagaacacaaataaggtttagatcaattgaagaagtataagagaatagattaaatatagcttgcttag 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3757656 attaagaacacaaataaggtttagatcaattgaagaagtataagagaataaattaaatatagcttgcttag 3757726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 600 - 701
Target Start/End: Original strand, 39580354 - 39580455
Alignment:
Q  600 tgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttggagatgactttttgg 699  Q
    ||||| |||||||||||   |||| |||||||||||||||||| |||||||||||||||  |||  |||||||||||| |||||||||||||||| ||||    
T  39580354 tgatggttattttggatagatttttcaacggtttgacacaagatttgtttatgctattgtgcagacgtttagactttggtttttggagatgacttcttgg 39580453  T
Q  700 tt 701  Q
    ||    
T  39580454 tt 39580455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 586 - 701
Target Start/End: Original strand, 15050328 - 15050441
Alignment:
Q  586 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 685  Q
    |||||||||||| |||||| |||||  |||   ||||| ||||||| |||||||||| |||||| |||||||||  ||| ||||||||||||||||||      
T  15050328 gtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctattgcgtaggcgtttagactttgattttttt 15050425  T
Q  686 agatgactttttggtt 701  Q
    |||||| || ||||||    
T  15050426 agatgatttcttggtt 15050441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 587 - 701
Target Start/End: Complemental strand, 10181917 - 10181803
Alignment:
Q  587 tttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgga 686  Q
    ||||||||||| ||||||  |||||||||   |||||  ||||||||| |||| || |||||||||||||| | |||  |||| | |||| |||||||||    
T  10181917 tttttggtaggtttgatggctattttggagaggttttttaacggtttggcacatgatttgtttatgctatttcccagtcgtttggtctttaatttttgga 10181818  T
Q  687 gatgactttttggtt 701  Q
    |||||||| ||||||    
T  10181817 gatgacttcttggtt 10181803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 2e-82; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 469 - 704
Target Start/End: Complemental strand, 9910548 - 9910313
Alignment:
Q  469 cttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagagaaac 568  Q
    |||||||||||||||||||||| | |||||||||||||| |||||||| ||||| |||||| |||||||||||||||  |||||||||||||||||||||    
T  9910548 cttctatgagtttgttgttaatggggttttcaaatacttaggtggtgattttacatgtgctgaactgcgctttaacttcgctcaactgcagaagagaaac 9910449  T
Q  569 aaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtt 668  Q
    ||||| |||||| ||  ||||||||||||||||||  ||||||| |||| |||||||||||||||| |||||||||||||| |||||||||||||| |||    
T  9910448 aaagtacggttacacgagtttttggtaggattgatagttatttttgatgggttttgcaacggtttgtcacaagacttgtttctgctattgctcaggcgtt 9910349  T
Q  669 tagactttgatttttggagatgactttttggttatg 704  Q
    ||||||||| ||||||||||||||||||||||||||    
T  9910348 tagactttggtttttggagatgactttttggttatg 9910313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 548 - 701
Target Start/End: Original strand, 6186542 - 6186695
Alignment:
Q  548 gctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgt 647  Q
    |||||||||||||||||||  |||||||| ||| ||  |||||||||| | ||||| ||||||||| | | |||||||||||||||||||||||| ||||    
T  6186542 gctcaactgcagaagagaagtaaagtgcgattacacgagtttttggtaagtttgataattattttgaaggggttttgcaacggtttgacacaagatttgt 6186641  T
Q  648 ttatgctattgctcaggtgtttagactttgatttttggagatgactttttggtt 701  Q
    || ||||||||| | ||||||||||||||  |||||||||||||||| ||||||    
T  6186642 ttttgctattgcgcgggtgtttagactttagtttttggagatgacttcttggtt 6186695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 548 - 701
Target Start/End: Original strand, 14951108 - 14951261
Alignment:
Q  548 gctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgt 647  Q
    ||||||||||||||||||| ||| ||||| ||| ||  |||||||||||| |||||| |||||||||| | |||||||||||||||| ||||||| ||||    
T  14951108 gctcaactgcagaagagaagcaatgtgcgattacacgagtttttggtaggtttgatggttattttggaggggttttgcaacggtttggcacaagatttgt 14951207  T
Q  648 ttatgctattgctcaggtgtttagactttgatttttggagatgactttttggtt 701  Q
    || ||||||||| | ||||||||||||||  | ||||||||||| || ||||||    
T  14951208 ttctgctattgcgcgggtgtttagactttagtgtttggagatgatttcttggtt 14951261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 540 - 701
Target Start/End: Original strand, 38531622 - 38531782
Alignment:
Q  540 ttaactgtgctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacaca 639  Q
    |||||||||||||||||||||||| || ||| ||||||||| ||  |||||||||||| |||||| || ||||||| | |||||||||| ||||  ||||    
T  38531622 ttaactgtgctcaactgcagaagaaaagcaaggtgcggttacacgggtttttggtaggtttgatggttcttttggagg-gttttgcaacagtttagcaca 38531720  T
Q  640 agacttgtttatgctattgctcaggtgtttagactttgatttttggagatgactttttggtt 701  Q
    ||| |||||| ||||| | | ||||||||||||| ||| |||||||||||||||||||||||    
T  38531721 agatttgtttctgctactacgcaggtgtttagacgttggtttttggagatgactttttggtt 38531782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 586 - 701
Target Start/End: Complemental strand, 27888630 - 27888515
Alignment:
Q  586 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 685  Q
    |||||||||||| | |||| ||||||||||   |||||  || |||||||||||||| |||||| | ||||||| |||  |||||||||||| |||||||    
T  27888630 gtttttggtaggttcgatggttattttggagaggttttttaaaggtttgacacaagatttgtttctactattgcgcagacgtttagactttggtttttgg 27888531  T
Q  686 agatgactttttggtt 701  Q
    ||||||||| ||||||    
T  27888530 agatgacttcttggtt 27888515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 586 - 701
Target Start/End: Complemental strand, 1533156 - 1533041
Alignment:
Q  586 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 685  Q
    |||| ||||| | |||||| ||||||||||   |||||  || |||||| ||||||| |||||| ||||||||| ||   |||| ||||||| |||||||    
T  1533156 gtttatggtaagtttgatggttattttggagaggttttttaatggtttggcacaagatttgtttctgctattgcgcaaacgtttggactttggtttttgg 1533057  T
Q  686 agatgactttttggtt 701  Q
    ||||||||| ||||||    
T  1533056 agatgacttcttggtt 1533041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 4e-80; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 469 - 704
Target Start/End: Complemental strand, 31699168 - 31698933
Alignment:
Q  469 cttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagagaaac 568  Q
    |||||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |    
T  31699168 cttctatgagtttgttgttaatggggttttcaaatacttaggtggtgattttacctgtgcttaactacgctttaactgcgctcaactgcagaagagaagc 31699069  T
Q  569 aaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtt 668  Q
    | |||||||||| ||  ||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| |||  ||    
T  31699068 agagtgcggttacacgggtttttggtaggattcatggttattttggatgggttttgcaacagtttgacacaagacttgtttatgttattgcttaggcatt 31698969  T
Q  669 tagactttgatttttggagatgactttttggttatg 704  Q
    ||||||||| ||||||||||| ||||||||||||||    
T  31698968 tagactttggtttttggagattactttttggttatg 31698933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 586 - 701
Target Start/End: Original strand, 46743175 - 46743290
Alignment:
Q  586 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 685  Q
    |||||||||||| |||||| |||||||||||  |||||  || |||||| ||||||| |||||| ||||||||| | || |||| ||||||| ||||| |    
T  46743175 gtttttggtaggtttgatggttattttggataggttttttaatggtttggcacaagatttgtttctgctattgcgcgggcgtttggactttggtttttag 46743274  T
Q  686 agatgactttttggtt 701  Q
    ||||||||| ||||||    
T  46743275 agatgacttcttggtt 46743290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 620 - 701
Target Start/End: Original strand, 52984633 - 52984713
Alignment:
Q  620 ttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttggagatgactttttggtt 701  Q
    |||||||||| |||| ||||||| |||||| ||||||||| | ||||||||||||||  |||||| ||||||||| ||||||    
T  52984633 ttttgcaacg-tttggcacaagatttgtttctgctattgcgcgggtgtttagactttagtttttgcagatgacttcttggtt 52984713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 653 - 701
Target Start/End: Original strand, 52991655 - 52991703
Alignment:
Q  653 ctattgctcaggtgtttagactttgatttttggagatgactttttggtt 701  Q
    ||||||| | || ||||||||||||||||||||||||||||| ||||||    
T  52991655 ctattgcgcgggcgtttagactttgatttttggagatgacttcttggtt 52991703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 469 - 701
Target Start/End: Original strand, 40600072 - 40600293
Alignment:
Q  469 cttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagagaaac 568  Q
    |||||||||||||||||||||| | |||||||||||||| |||||||| |||||| |||||||||||||||           |||||||||||||||| |    
T  40600072 cttctatgagtttgttgttaatggggttttcaaatacttaggtggtgattttaccagtgcttaactgcgct-----------caactgcagaagagaagc 40600160  T
Q  569 aaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtt 668  Q
    ||||||| |||||||  |||||||||||| |||||| |||||||||| | |||||||||||||||| |||||||||||||| |||||||||| ||| |||    
T  40600161 aaagtgcagttatacgagtttttggtaggtttgatggttattttggacgggttttgcaacggtttggcacaagacttgtttttgctattgcttaggcgtt 40600260  T
Q  669 tagactttgatttttggagatgactttttggtt 701  Q
     | ||||||||||||||||||||||||||||||    
T  40600261 catactttgatttttggagatgactttttggtt 40600293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 469 - 702
Target Start/End: Original strand, 42268993 - 42269215
Alignment:
Q  469 cttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagagaaac 568  Q
    |||||||||||||||||||||| | ||||||||||| || |||||||| ||||| ||||||||||| ||||           |||||||||||||||| |    
T  42268993 cttctatgagtttgttgttaattgggttttcaaataattaggtggtgattttacttgtgcttaactacgct-----------caactgcagaagagaagc 42269081  T
Q  569 aaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtt 668  Q
    ||||||||||||  |  ||||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||||||||| | |||||||||||| |||    
T  42269082 aaagtgcggttacccgagtttttggtaggattgatggttattttggatgggttttgcaacagtttggcacaagacttgtttctactattgctcaggcgtt 42269181  T
Q  669 tagactttgatttttggagatgactttttggtta 702  Q
    |||| |||| ||||||||||||||||||||||||    
T  42269182 tagaatttggtttttggagatgactttttggtta 42269215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 548 - 694
Target Start/End: Complemental strand, 12156132 - 12155986
Alignment:
Q  548 gctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgt 647  Q
    |||||||||| |||||||| ||| ||||| |||  |  |||||||||||| |||||| |||||||||| | ||||||||| |||||||||||||| ||||    
T  12156132 gctcaactgctgaagagaagcaaggtgcgattacgcgagtttttggtaggtttgatggttattttggaggggttttgcaatggtttgacacaagatttgt 12156033  T
Q  648 ttatgctattgctcaggtgtttagactttgatttttggagatgactt 694  Q
    || ||||||||| | ||||||||||||||  ||||||||||||||||    
T  12156032 ttctgctattgcgcgggtgtttagactttagtttttggagatgactt 12155986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 587 - 701
Target Start/End: Original strand, 26331367 - 26331481
Alignment:
Q  587 tttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgga 686  Q
    ||||||||||| |||||||||||||| ||   ||||| ||||| |||   |||||| |||||||||||||||| |||  |||||||||||| ||||||||    
T  26331367 tttttggtaggtttgatgattattttagagatgtttttcaacgatttcgtacaagatttgtttatgctattgcacagacgtttagactttggtttttgga 26331466  T
Q  687 gatgactttttggtt 701  Q
    |||||||| ||||||    
T  26331467 gatgacttattggtt 26331481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 586 - 695
Target Start/End: Original strand, 26331707 - 26331816
Alignment:
Q  586 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 685  Q
    |||||||||||| |||||||||||||| ||   ||||| ||||| |||   |||||| |||||||||||||||| |||  |||||||||||| |||||||    
T  26331707 gtttttggtaggtttgatgattattttagagatgtttttcaacgatttcgtacaagatttgtttatgctattgcacagacgtttagactttggtttttgg 26331806  T
Q  686 agatgacttt 695  Q
    ||||||||||    
T  26331807 agatgacttt 26331816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 599 - 694
Target Start/End: Original strand, 24867389 - 24867484
Alignment:
Q  599 ttgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttggagatgactt 694  Q
    |||||| ||||||||||   | ||| |||||| ||| ||||||| |||||||||||||||| || | |||||||||||| ||||||||||||||||    
T  24867389 ttgatggttattttggagaggattttcaacggattggcacaagatttgtttatgctattgcgcatgcgtttagactttggtttttggagatgactt 24867484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 547 - 708
Target Start/End: Complemental strand, 11470725 - 11470563
Alignment:
Q  547 tgctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttg 646  Q
    ||||||| |||| ||||||||||| ||| ||||| ||  |||||||||||| |||||   ||||||| | | |||||||||||||||| ||||||| |||    
T  11470725 tgctcaaatgcaaaagagaaacaatgtgtggttacacgagtttttggtaggtttgatagctattttgaaggggttttgcaacggtttggcacaagatttg 11470626  T
Q  647 ttt-atgctattgctcaggtgtttagactttgatttttggagatgactttttggttatgatgt 708  Q
    |||  || |||||  | || ||||||| |||| ||||| ||||||| ||| ||||| ||||||    
T  11470625 tttcttgatattgtgcgggagtttagattttggttttttgagatgattttatggttttgatgt 11470563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 615
Target Start/End: Complemental strand, 42221260 - 42221195
Alignment:
Q  550 tcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttgga 615  Q
    ||||||||||| ||||| ||| ||||||||  ||| |||||||||||| |||||  ||||||||||    
T  42221260 tcaactgcagatgagaagcaaggtgcggttgcacaagtttttggtaggtttgatagttattttgga 42221195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 2e-54; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 469 - 701
Target Start/End: Original strand, 2077609 - 2077831
Alignment:
Q  469 cttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagagaaac 568  Q
    |||||||||||||||||||||| | |||||||||||||| |||||||| ||||||| ||||||| |||||         ||| |||||||||||| ||      
T  2077609 cttctatgagtttgttgttaatggggttttcaaatacttaggtggtgattttacctatgcttaattgcgc---------gctgaactgcagaagaaaagt 2077699  T
Q  569 aaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtt 668  Q
    |||||||||||| |   ||||| |||||| ||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||  |||    
T  2077700 aaagtgcggttacaggagtttt-ggtaggtttgatgattattttggatgggttttgcaacggttttgcacaagacttgtttatgctattgctcagacgtt 2077798  T
Q  669 tagactttgatttttggagatgactttttggtt 701  Q
    ||||||||| |||||||||||||||||||||||    
T  2077799 tagactttggtttttggagatgactttttggtt 2077831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 548 - 701
Target Start/End: Complemental strand, 10494690 - 10494537
Alignment:
Q  548 gctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgt 647  Q
    |||||||||||||||||||| |||||||||||| ||   ||||||||||| |||||| |||||||  | | ||||||||| |||||| ||||||| ||||    
T  10494690 gctcaactgcagaagagaaagaaagtgcggttacacggatttttggtaggtttgatggttattttataggggttttgcaatggtttggcacaagatttgt 10494591  T
Q  648 ttatgctattgctcaggtgtttagactttgatttttggagatgactttttggtt 701  Q
    || |||||||||  ||| ||||||||||||||||||||||||||||||| ||||    
T  10494590 ttctgctattgcaaaggcgtttagactttgatttttggagatgacttttgggtt 10494537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 548 - 694
Target Start/End: Original strand, 14351462 - 14351608
Alignment:
Q  548 gctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgt 647  Q
    |||||||||| |||||||| ||| ||||| |||  |  |||||||||||| |||||| |||||||||| | ||||||||| |||||| ||||||| ||||    
T  14351462 gctcaactgctgaagagaagcaatgtgcgattacgcgagtttttggtaggtttgatggttattttggaggggttttgcaatggtttggcacaagatttgt 14351561  T
Q  648 ttatgctattgctcaggtgtttagactttgatttttggagatgactt 694  Q
    || ||||||||| | ||||||||||||||  ||||||||||||||||    
T  14351562 ttctgctattgcgcgggtgtttagactttagtttttggagatgactt 14351608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 697
Target Start/End: Complemental strand, 11814510 - 11814351
Alignment:
Q  540 ttaactgtgctcaactgcagaagagaaacaaagtgcggttatac--atgtttttggtaggattgatgattattttggatgagttttgcaacggtttgaca 637  Q
    ||||||||  ||||||||||||||||| |||||||| |||| ||  || |||||| |||| |||||| ||| |||||| | |||||||||| ||| | ||    
T  11814510 ttaactgtaatcaactgcagaagagaagcaaagtgcagttacacggatttttttgctaggtttgatggttactttggaggggttttgcaacagttaggca 11814411  T
Q  638 caagacttgtttatgctattgctcaggtgtttagactttgatttttggagatgacttttt 697  Q
    ||||| || ||| ||||||||| || | |||||||||| | ||||||||||| |||||||    
T  11814410 caagatttatttctgctattgcgcaagcgtttagacttaggtttttggagatcacttttt 11814351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 588 - 700
Target Start/End: Complemental strand, 29099391 - 29099279
Alignment:
Q  588 ttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttggag 687  Q
    |||||||| | |||||| ||||||||||   ||||| ||||| | || ||||| | |||||||||||||||| ||   |||||||||||| |||||||||    
T  29099391 ttttggtaagtttgatggttattttggagaggtttttcaacgatatggcacaaaatttgtttatgctattgcgcaaacgtttagactttggtttttggag 29099292  T
Q  688 atgactttttggt 700  Q
    ||||||| |||||    
T  29099291 atgacttcttggt 29099279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 586 - 701
Target Start/End: Original strand, 27787029 - 27787144
Alignment:
Q  586 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 685  Q
    |||||||||||| |||||| ||||||||||   |||||  || |||||| |  |||| |||||| ||||||||| |||  |||| ||||||| |||||||    
T  27787029 gtttttggtaggtttgatggttattttggagaggttttttaatggtttggcttaagatttgtttctgctattgcgcagacgtttggactttggtttttgg 27787128  T
Q  686 agatgactttttggtt 701  Q
    ||||||||| ||||||    
T  27787129 agatgacttcttggtt 27787144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 586 - 671
Target Start/End: Original strand, 26842258 - 26842343
Alignment:
Q  586 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttag 671  Q
    |||||||||||| |||||| ||| ||||||   ||||| ||||||| |||||||||| |||||| | ||||||| |||||||||||    
T  26842258 gtttttggtaggtttgatggttagtttggagaggtttttcaacggtatgacacaagatttgtttctcctattgcgcaggtgtttag 26842343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 469 - 507
Target Start/End: Complemental strand, 11814642 - 11814604
Alignment:
Q  469 cttctatgagtttgttgttaatagagttttcaaatactt 507  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  11814642 cttctatgagtttgttgttaatagggttttcaaatactt 11814604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 586 - 683
Target Start/End: Complemental strand, 25537564 - 25537469
Alignment:
Q  586 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgattttt 683  Q
    |||||||||||| |||||| |||||  |||   ||||| ||||||| |||||||||| |||||| ||||||| |  ||| ||||||||||||||||||    
T  25537564 gtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctatttcgtaggcgtttagactttgattttt 25537469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 3e-53; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 469 - 697
Target Start/End: Original strand, 43047880 - 43048097
Alignment:
Q  469 cttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagagaaac 568  Q
    |||||||||||||||||||||| | |||||| ||||||| |||||||| |||||  |||||||||||||||           ||||||||||||||||||    
T  43047880 cttctatgagtttgttgttaatggggttttctaatacttaggtggtgattttactcgtgcttaactgcgct-----------caactgcagaagagaaac 43047968  T
Q  569 aaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtt 668  Q
    |||||||||||| |||  ||||||||||| |||||| ||||||||||||  |||||||||||||| |||||||| ||||||||||||||||||  |  ||    
T  43047969 aaagtgcggttacacagatttttggtaggtttgatggttattttggatggattttgcaacggttttacacaagatttgtttatgctattgctcgtgcatt 43048068  T
Q  669 tagactttgatttttggagatgacttttt 697  Q
    ||||||||| |||||||||||||||||||    
T  43048069 tagactttggtttttggagatgacttttt 43048097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 540 - 704
Target Start/End: Complemental strand, 24717907 - 24717743
Alignment:
Q  540 ttaactgtgctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacaca 639  Q
    ||||||| ||||||||||| ||||||| |||||||||||||      |||||||||||||||||| |||||||||||| |||||||||| ||||| ||||    
T  24717907 ttaactgcgctcaactgcaaaagagaagcaaagtgcggttacctggttttttggtaggattgatggttattttggatgggttttgcaactgtttggcaca 24717808  T
Q  640 agacttgtttatgctattgctcaggtgtttagactttgatttttggagatgactttttggttatg 704  Q
    |||||||||| | |||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  24717807 agacttgtttctactattgctcaggcgtttagactttggtttttggagatgactttttggttatg 24717743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 586 - 701
Target Start/End: Complemental strand, 32979074 - 32978959
Alignment:
Q  586 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 685  Q
    ||||||||| || |||||| ||||||||||   |||||  ||| ||||| ||||||| |||||||||  ||||| |||| |||| ||||||| |||||||    
T  32979074 gtttttggtgggtttgatggttattttggagaggttttttaacagtttggcacaagatttgtttatgtcattgcgcaggcgtttggactttggtttttgg 32978975  T
Q  686 agatgactttttggtt 701  Q
    ||||||||| ||||||    
T  32978974 agatgacttcttggtt 32978959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 587 - 694
Target Start/End: Original strand, 21590826 - 21590933
Alignment:
Q  587 tttttggtaggattgatgattattttggatgag-ttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 685  Q
    ||||||||||| ||| || |||||||||| ||| |||| | |||||||| ||||||| |||||| ||||||||| ||   ||||||| |||| |||||||    
T  21590826 tttttggtaggtttgttggttattttgga-gagatttttctacggtttggcacaagatttgtttctgctattgcacaaacgtttagaatttgttttttgg 21590924  T
Q  686 agatgactt 694  Q
    |||||||||    
T  21590925 agatgactt 21590933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 659
Target Start/End: Complemental strand, 26712022 - 26711907
Alignment:
Q  545 tgtgctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacac-aagac 643  Q
    ||||||||| ||| |||||||| ||| ||||||||| |   |||||||||||| |||||| ||||||| || |  |||| |||||||||| ||| ||||     
T  26712022 tgtgctcaagtgcggaagagaatcaaggtgcggttacatgggtttttggtaggtttgatggttattttagagggatttttcaacggtttggcactaagat 26711923  T
Q  644 ttgtttatgctattgc 659  Q
    ||||||  ||||||||    
T  26711922 ttgtttccgctattgc 26711907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 105; Significance: 5e-52; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 469 - 703
Target Start/End: Original strand, 2595 - 2818
Alignment:
Q  469 cttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagagaaac 568  Q
    ||||||||||||||||||| || |  ||||||||||||| | |||||| |||||||||||||||| |||||            ||||||||||||||| |    
T  2595 cttctatgagtttgttgttcattggattttcaaatacttagctggtgattttacctgtgcttaaccgcgctg-----------aactgcagaagagaagc 2683  T
Q  569 aaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtt 668  Q
    |||||||||||| |   ||||||||||||||||||||||||||| |||| | |||||||||||||| |||||||||||||| |||||||||||||| |||    
T  2684 aaagtgcggttacatgagtttttggtaggattgatgattattttagatgggatttgcaacggtttggcacaagacttgtttctgctattgctcaggcgtt 2783  T
Q  669 tagactttgatttttggagatgactttttggttat 703  Q
    |||||||||  |||||||||||| |||||||||||    
T  2784 tagactttgggttttggagatgaatttttggttat 2818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 4e-43; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 540 - 701
Target Start/End: Complemental strand, 10772754 - 10772594
Alignment:
Q  540 ttaactgtgctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacaca 639  Q
    ||||||| | |||||| |||||||||| |||| ||| |||| ||  |||||||||||| |||||| |||||||||||| |||||||||||||||| ||||    
T  10772754 ttaactgcgttcaactacagaagagaagcaaa-tgcagttacacgggtttttggtaggtttgatggttattttggatgggttttgcaacggtttggcaca 10772656  T
Q  640 agacttgtttatgctattgctcaggtgtttagactttgatttttggagatgactttttggtt 701  Q
    |||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||    
T  10772655 agacttgtttctgccattgctcaagcgtttagactttgatttttggagatgactttttggtt 10772594  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 540 - 701
Target Start/End: Complemental strand, 30845283 - 30845122
Alignment:
Q  540 ttaactgtgctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacaca 639  Q
    ||||||| ||||||||| ||||||||| ||| |||||||||      ||||||||||| |||||| |||||||||| | |||||||||||||||||||||    
T  30845283 ttaactgcgctcaactgtagaagagaagcaaggtgcggttacctggatttttggtaggtttgatggttattttggaggggttttgcaacggtttgacaca 30845184  T
Q  640 agacttgtttatgctattgctcaggtgtttagactttgatttttggagatgactttttggtt 701  Q
    ||| |||||| |||||||||   ||||||||||||||| |||||| ||||||||||||||||    
T  30845183 agatttgtttctgctattgcgtgggtgtttagactttggtttttgaagatgactttttggtt 30845122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 548 - 701
Target Start/End: Original strand, 24350458 - 24350611
Alignment:
Q  548 gctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgt 647  Q
    |||||||| |||||||||| ||| ||| | ||| ||  |||||||||| | |||||| |||||||||| | |||||||||||||||  ||||| | ||||    
T  24350458 gctcaactacagaagagaagcaatgtgtgattacacgagtttttggtaagtttgatggttattttggaggggttttgcaacggtttagcacaaaatttgt 24350557  T
Q  648 ttatgctattgctcaggtgtttagactttgatttttggagatgactttttggtt 701  Q
    || ||||||||| | || |||||||||||  |||||||||||||||| ||||||    
T  24350558 ttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggtt 24350611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 548 - 701
Target Start/End: Complemental strand, 24843039 - 24842887
Alignment:
Q  548 gctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgt 647  Q
    ||||||||||||||||||| ||| ||||||||| ||  |||||||||||| |||||| || ||||||| | ||||  |||| ||||  ||||||| ||||    
T  24843039 gctcaactgcagaagagaagcaaggtgcggttacacgggtttttggtaggtttgatggttcttttgga-gggtttaacaacagtttagcacaagatttgt 24842941  T
Q  648 ttatgctattgctcaggtgtttagactttgatttttggagatgactttttggtt 701  Q
    || ||||| ||||| |||||||| || ||| ||||||||| |||||||||||||    
T  24842940 ttttgctactgctcgggtgtttaaacgttggtttttggagctgactttttggtt 24842887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 606 - 694
Target Start/End: Original strand, 10670327 - 10670415
Alignment:
Q  606 ttattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttggagatgactt 694  Q
    ||||||||||   ||||| |||||||||||||||||| |||||| ||||||||| ||||  |||||||||||  ||||||| |||||||    
T  10670327 ttattttggagaggtttttcaacggtttgacacaagatttgtttctgctattgcgcaggcatttagactttggattttggatatgactt 10670415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 549 - 694
Target Start/End: Complemental strand, 52635535 - 52635391
Alignment:
Q  549 ctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtt 648  Q
    |||| ||||||||||||| ||| ||| | ||| ||  |||||||||||| |||||| |||||||||| || |||||||||| |||| ||||||| |||||    
T  52635535 ctcacctgcagaagagaagcaatgtgtgattacacgagtttttggtaggtttgatggttattttggagga-ttttgcaacgatttggcacaagatttgtt 52635437  T
Q  649 tatgctattgctcaggtgtttagactttgatttttggagatgactt 694  Q
    | ||||||||  | | ||||||||||||  |||||||| |||||||    
T  52635436 tctgctattgagcggatgtttagactttagtttttggaaatgactt 52635391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 586 - 694
Target Start/End: Complemental strand, 45872979 - 45872871
Alignment:
Q  586 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 685  Q
    |||||||||||| ||| || ||||||||||   |||||||||||||||   |||||| |||||| ||||||||| || | |||||||||||| |||||||    
T  45872979 gtttttggtaggtttggtggttattttggagacgttttgcaacggtttcgtacaagatttgtttctgctattgcgcatgcgtttagactttggtttttgg 45872880  T
Q  686 agatgactt 694  Q
    |||||||||    
T  45872879 agatgactt 45872871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 644 - 701
Target Start/End: Complemental strand, 55728446 - 55728389
Alignment:
Q  644 ttgtttatgctattgctcaggtgtttagactttgatttttggagatgactttttggtt 701  Q
    |||||| ||||||||| | ||||||||||||||  |||||||||||||||| ||||||    
T  55728446 ttgtttctgctattgcgcgggtgtttagactttagtttttggagatgacttcttggtt 55728389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 701
Target Start/End: Complemental strand, 12130396 - 12130357
Alignment:
Q  662 aggtgtttagactttgatttttggagatgactttttggtt 701  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  12130396 aggtgtttagactttggtttttggagatgacttattggtt 12130357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 625 - 700
Target Start/End: Complemental strand, 2963 - 2886
Alignment:
Q  625 caacggtttgacacaagacttgtttatgctattgctcagg--tgtttagactttgatttttggagatgactttttggt 700  Q
    |||| ||||| ||||||| |||||| ||||||||| | ||  ||||||||||||| ||||||||||||| ||||||||    
T  2963 caacagtttggcacaagatttgtttctgctattgcacgggcgtgtttagactttggtttttggagatgaatttttggt 2886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 666 - 708
Target Start/End: Complemental strand, 2670 - 2628
Alignment:
Q  666 gtttagactttgatttttggagatgactttttggttatgatgt 708  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||    
T  2670 gtttagactttgattttgggagatgactttgtggttttgatgt 2628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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