View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6929_low_10 (Length: 253)

Name: NF6929_low_10
Description: NF6929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6929_low_10
NF6929_low_10
[»] chr2 (2 HSPs)
chr2 (14-253)||(33383143-33383382)
chr2 (78-231)||(33377018-33377168)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 33383382 - 33383143
Alignment:
Q  14 aatgaacaaaaacttgatggatatggatttagtgacaaaccctttttctcagaaacatcactttcaaaagagaattcattttcagcttctttagaatcca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33383382 aatgaacaaaaacttgatggatatggatttagtgacaaaccctttttctcagaaacatcactttcaaaagagaattcattttcagcttctttagaatcca 33383283  T
Q  114 aactataactataatttgcttttggaaacatcattacagaaattggttcaaagtaatgatctttctcatcacccttttcagaactcaaactatctaagct 213  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33383282 aactataactataatttgcttttggaaacatcattatagaaattggttcaaagtaatgatctttctcatcacccttttcagaactcaaactctctaagct 33383183  T
Q  214 tccactgatcaaactagtggtgttacttgaatggagaaca 253  Q
    ||||||||||||||||||| ||||||||||||||| ||||    
T  33383182 tccactgatcaaactagtgatgttacttgaatggaaaaca 33383143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 33377168 - 33377018
Alignment:
Q  78 caaaagagaattcattttcagcttctttagaatccaaactataactataatttgcttttggaaacatcattacagaaattggttcaaagtaatgatcttt 177  Q
    |||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       
T  33377168 caaaagagaactcgttttcaacttctttagaatccaaactataactataatttgcttttggaaacatcattaaagaaattggttcaaagtaatgatc--- 33377072  T
Q  178 ctcatcacccttttcagaactcaaactatctaagcttccactgatcaaactagt 231  Q
     |||||| ||||||||||||||||||| |||||||||||||| | |||||||||    
T  33377071 atcatcatccttttcagaactcaaactctctaagcttccactaaccaaactagt 33377018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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