View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6929_low_11 (Length: 247)

Name: NF6929_low_11
Description: NF6929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6929_low_11
NF6929_low_11
[»] chr5 (3 HSPs)
chr5 (8-247)||(35059770-35060006)
chr5 (8-247)||(43021071-43021308)
chr5 (30-237)||(42810256-42810459)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 35060006 - 35059770
Alignment:
Q  8 attattctacagcaaatcttgtttgataaagcagaatatgttgcggattttcataaaataattgcaaagcactgctttacacaaagacattttttcatat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  35060006 attattctacagcaaatcttgtttgataaagcagaatatgttgcggattttcataaaataattgcaaagcactgctttacaca--gacattttttcatat 35059909  T
Q  108 cattaactacttaccctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattctttttgca 207  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35059908 cattaactacttacc-tattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattctttttgca 35059810  T
Q  208 tgtggaactatgcagtgcttgagactcatccgagtttatt 247  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35059809 tgtggaactatgcagtgcttgagactcatccgagtttatt 35059770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 43021308 - 43021071
Alignment:
Q  8 attattctacagcaaatcttgtttgataaagcagaatatgttgcggattttcataaaataattgcaaagcactgctttacacaaagacattttttcatat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43021308 attattctacagcaaatcttgtttgataaagcagaatatgttgtggattttcataaaataattgcaaagcactgctttacacaaagacatttttgcatat 43021209  T
Q  108 cattaactacttaccctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattctttttgca 207  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43021208 cattaactactta-cctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattcttttggca 43021110  T
Q  208 tgtggaactatgcagtgcttgagactcatccgagtttatt 247  Q
    ||| |||||||||||||||| |||||||||||||||||||    
T  43021109 tgt-gaactatgcagtgcttaagactcatccgagtttatt 43021071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 30 - 237
Target Start/End: Complemental strand, 42810459 - 42810256
Alignment:
Q  30 ttgataaagcagaatatgttgcggattttcataaaataattgcaaagcactgctttacacaaagacattttttcatatcattaactacttaccctattga 129  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| |||||||||||||| | || |||    
T  42810459 ttgataaagcagaatatgttgtggattttcataaaataattgtaaagcactgctttacac-aagacatttttccatgtcattaactactta-catagtga 42810362  T
Q  130 atatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattctttttgcatgtggaactatgcagtgcttga 229  Q
    || ||||||| |||||||||| ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||||| ||||||| |    
T  42810361 atttagtttccaacttttatgattggcagagtaacatattgtaaaaggatgata-atgttatcactattctttttgcat-ttgaactatggagtgcttaa 42810264  T
Q  230 gactcatc 237  Q
    || |||||    
T  42810263 gagtcatc 42810256  T

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