View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6929_low_13 (Length: 240)
Name: NF6929_low_13
Description: NF6929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6929_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 35059745 - 35059522
Alignment:
| Q |
1 |
ttaattcctacatggaacagggacttatccaaggatcgagaatttggtagagatgtgagcaatgttggagatgtttcttcgttgaaaccaaaaacagtat |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35059745 |
ttaattcctacatggaacagggacttatccaaagatcgagaatttggtagagatgtgagcaatgttggagatgtttcttcgttgaaaccaaaaacagtat |
35059646 |
T |
|
| Q |
101 |
gcactttctattgtcttaattttcagctctctatgtggaattttatgcgtttattattttctgtgggttttctacctaacgtttgtccagaaacctcaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35059645 |
gcactttctattgtcttaattttcagctctctatgtggaattttatgcgtttattattttctgtgggttttctacctaacgtttgtccagaaacctcaag |
35059546 |
T |
|
| Q |
201 |
catgcaaaagaacatcattatagt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
35059545 |
catgcaaaagaacatcattatagt |
35059522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42810227 - 42810019
Alignment:
| Q |
1 |
ttaattcctacatggaacagggacttatccaaggatcgagaatttggtagagatgtgagcaatgttggagatgtttcttcgttgaaaccaaaaacagtat |
100 |
Q |
| |
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||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||| |||||| |
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| T |
42810227 |
ttaattctttcatggaacagggacttatccaaagatcgagaatttggtagagatgtgagtagtgttggagatgtttcttcgtcgaaaccaaaagcagtat |
42810128 |
T |
|
| Q |
101 |
gcactttctattgtcttaattttcagctctctatgtggaattttatgcgtttattattttctgtgggttttctacctaacgtttgtccagaaacctcaag |
200 |
Q |
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| |||||||||||| |||||||||||| ||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42810127 |
gtactttctattgttttaattttcagc---------------ttatgcgcttattaatttctgtgggttttctaccacacgtttgtccagaaacctcaag |
42810043 |
T |
|
| Q |
201 |
catgcaaaagaacatcattatagt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
42810042 |
catgcaaaagaacatcattatagt |
42810019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 43021039 - 43020841
Alignment:
| Q |
11 |
catggaacagggacttatccaaggatcgagaatttggtagagatgtgagcaatgttggagatgtttcttcgttgaaaccaaaaacagtatgcactttcta |
110 |
Q |
| |
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||||||||||| |||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| | |||||||||| ||||||| |||||||| |
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| T |
43021039 |
catggaacaggaacttatccaaagatcgagaatttggtagagatgtgagtagtgttggagatgtttcttcatcgaaaccaaaagcagtatgtactttcta |
43020940 |
T |
|
| Q |
111 |
ttgtcttaattttcagctctctatgtggaattttatgcgtttattattttctgtgggttttctacctaacgtttgtccagaaacctcaagcatgcaaaag |
210 |
Q |
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|||| |||||||||||| ||||||| |||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
43020939 |
ttgttttaattttcagc---------------ttatgcgcttattaatttctgtgggttttctaccaaatgtttgtccagaaacctcaagcatgcaaaag |
43020855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 41567435 - 41567636
Alignment:
| Q |
16 |
aacagggacttatccaaggatcgagaatttggtagagatgtgagcaatgttggagatgtttcttcgttgaaaccaaaaacagtatgcactttctattgtc |
115 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||| || ||||||| |||||| ||||||||||| | ||| ||||||| ||||| ||||| ||||||| |
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| T |
41567435 |
aacagggatttctccaaggatcgagattttggtagggaagtgagcagtgttggggatgtttcttcaataaaatcaaaaactgtatgtactttttattgtc |
41567534 |
T |
|
| Q |
116 |
ttaattttca--gctctctatgtggaattttatgcgtttattattttctgtgggttttctacctaacgtttgtccagaaacctcaagcatgcaaaagaac |
213 |
Q |
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|||||||||| |||||| | |||| ||||||||| | | | ||| ||||| |||||||||||| ||||| |||||| |||| |||||||| |||||| |
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| T |
41567535 |
ttaattttcatccctctctctttggacttttatgcgcctgtgactttttgtggtttttctacctaaagtttgcccagaatcctccagcatgcagaagaac |
41567634 |
T |
|
| Q |
214 |
at |
215 |
Q |
| |
|
|| |
|
|
| T |
41567635 |
at |
41567636 |
T |
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