View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6929_low_2 (Length: 432)
Name: NF6929_low_2
Description: NF6929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6929_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 137 - 417
Target Start/End: Original strand, 34400149 - 34400431
Alignment:
| Q |
137 |
gtttgtcaatatacctcgtgagtataggctgtacagttctccccatgaagctttactgtagattaatgnnnnnnnnn--aaacagcaaatattattaaac |
234 |
Q |
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| T |
34400149 |
gtttgtcaatatacctcgtgagtataggctgtatagttctccccatgaaactttaccgtagattaatgttttttttttaaaaaagcaaatataattaaac |
34400248 |
T |
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| Q |
235 |
aaacaaatccctgtttaagacgatcagaaatcggtaaaattgatactataaacaagaggcgccaccaaaatacaaactccttcacgaaaaataaccacag |
334 |
Q |
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| T |
34400249 |
aaacagatccatgttcaagacgatcagaaatcggtaaaactgatactataaacaataggcgtcaccaaaatacaggctccttcacgaaaaataaccacag |
34400348 |
T |
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| Q |
335 |
taaaaatgatattcaaacactcatcgtcactactcactccattaaaaaacaccctttaaaataaaactctcagttttgaacac |
417 |
Q |
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| T |
34400349 |
taaaaatgatattcaaacactcatcatcactactcacctcattaaaaaacaccctttaaaataaaactctcagttttgaacac |
34400431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 33109829 - 33109871
Alignment:
| Q |
215 |
aacagcaaatattattaaacaaacaaatccctgtttaagacga |
257 |
Q |
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| T |
33109829 |
aacagcaaatattattaaacaatcaaatctctgcttaagacga |
33109871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 25992453 - 25992373
Alignment:
| Q |
217 |
cagcaaatattattaaacaaacaaatccctgtttaagacgatcagaaatcggtaaaattgatactataaacaagaggcgcc |
297 |
Q |
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| T |
25992453 |
cagcaaatattattaaacaaccagatctctgctcaagacgaacagagaccggtgaaaatgataatacaaacaaaaggcgcc |
25992373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 308 - 403
Target Start/End: Complemental strand, 7696246 - 7696151
Alignment:
| Q |
308 |
aaactccttcacgaaaaataaccacagtaaaaatgatattcaaacactcatcgtcactactcactccatta-aaaaacaccctttaaaataaaactc |
403 |
Q |
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| T |
7696246 |
aaactccttcacgaaaacga-ccaatgtaaaaatgatattcaaccactcatcgtcactactcactcccttagaaaaacacccctaaaaataaaactc |
7696151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 421
Target Start/End: Original strand, 38637028 - 38637143
Alignment:
| Q |
306 |
acaaactccttcacgaaaaataaccacagtaaaaatgatattcaaacactcatcgtcactactcactccatta-aaaaacaccctttaaaataaaactct |
404 |
Q |
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| T |
38637028 |
acaaactccttcacgaaaac-aaccgctgtaaaaatgatatccaaccacccatcgtcactactcacccccttagaaaaacaccccttatactaaaactcc |
38637126 |
T |
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| Q |
405 |
cagttttgaacaccaaa |
421 |
Q |
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| T |
38637127 |
caatcttgaacaccaaa |
38637143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 421
Target Start/End: Complemental strand, 49528328 - 49528243
Alignment:
| Q |
337 |
aaaatgatattcaaacactcatcgtcactactcactccatta-aaaaacaccctttaaaataaaactctcagttttgaacaccaaa |
421 |
Q |
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| T |
49528328 |
aaaacgatattcaaccatccatcttcactactcacccccttagaaaaacacccctcaaaataaaactctcagtcttgaacaccaaa |
49528243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 421
Target Start/End: Complemental strand, 4171026 - 4170915
Alignment:
| Q |
310 |
actccttcacgaaaaataaccacagtaaaaatgatattcaaacactcatcgtcactactcactccatta-aaaaacaccctttaaaataaaactctcagt |
408 |
Q |
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| T |
4171026 |
actccttcacgaaaa-tgaccattgtataaatgatatccaaccatccatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagt |
4170928 |
T |
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| Q |
409 |
tttgaacaccaaa |
421 |
Q |
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| T |
4170927 |
ccttaacaccaaa |
4170915 |
T |
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