View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6929_low_6 (Length: 362)
Name: NF6929_low_6
Description: NF6929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6929_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 34958442 - 34958767
Alignment:
| Q |
13 |
caatctcaacatataataatatttatcaagtattattatatgatcttgggattgaatagaagaaaatgtggtttcttttaaagactatatatgcgcatat |
112 |
Q |
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| T |
34958442 |
caatctcaacatatactaatatttatcaagtattgttatatgatctttggattgaatagaagaaaatgtggtttcttttaaagactatatatgcgcatat |
34958541 |
T |
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| Q |
113 |
tctcactcttactagttcaggatatgtcagtagggtcgaaaaaagtcataattttgttttttgaaaatgaaaaacatatagaaattgtaattaagtaatt |
212 |
Q |
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| T |
34958542 |
tctcactcttactagttcaggatatgtcagtagggtcgaaaaaagtcataattttgttttttgaaaatgaaaaacatatagaaattgtaattaagtaatt |
34958641 |
T |
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| Q |
213 |
aagtacaagaacaaagtggaagcaagctttgtttgcaaggctttaaattgtgttagcaatccattaatggtactatgaataaaacggtgttcattgattg |
312 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34958642 |
aagtacaataacaaagtggaagcaagctttgtttgcaaggctttaaattgtgttagcaatccattaatggtactatgaataaaacagtgttcattgattg |
34958741 |
T |
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| Q |
313 |
atgagaagatgaatatatatcatcat |
338 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34958742 |
atgagaagatgaatatatatcatcat |
34958767 |
T |
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