View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6929_low_9 (Length: 256)
Name: NF6929_low_9
Description: NF6929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6929_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 2492739 - 2492496
Alignment:
| Q |
1 |
cttatgtttttgttttgttgggtaaacatttttgacaaatcctttct-tgaaattcagatatacaactatcgcgtgtcgtgtttgaactcagatgaatat |
99 |
Q |
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| T |
2492739 |
cttatgtttttgttttgttgggtaaacatttttgataaatccattgtctgaaattcacatgtacaactgtcgcgtgtcgtgtttgaactcagatgaatat |
2492640 |
T |
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| Q |
100 |
gtctaatctaataatattagtgtcgtcggtcaaggtaaacacgtgaagcttatgcactgttgcgagatctcgtttgaattttagatgaaagtgtatagtt |
199 |
Q |
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| T |
2492639 |
gtctaatctagtaatattagtgtcgtcggtcaaggtaaacacgtgaagcttatgcactgttgcgagatctcgtttgaattttagatgaaagtgtatagtt |
2492540 |
T |
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| Q |
200 |
tannnnnnngaagaataaagtgtatagtttattaatattgatatt |
244 |
Q |
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| T |
2492539 |
ta-ttttttgaagaataaagtgtatagtttattaatattgatatt |
2492496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 188
Target Start/End: Complemental strand, 2491709 - 2491578
Alignment:
| Q |
57 |
gatatacaactatcgcgtgtcgtgtttgaactcagatgaatatgtctaatctaataatattagtgtcgtcggtcaaggtaaacacgtgaagcttatgcac |
156 |
Q |
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||||||||||| || |||| |||||||| |||||| ||| |||||| |||| |||||||||||||||| || ||||||| |||| || |||||| |
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| T |
2491709 |
gatatacaactgtcaggtgttgtgtttgagttcagataaatgtgtctattctagtaatattagtgtcgtcaactaacataaacacctgaaactcatgcac |
2491610 |
T |
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| Q |
157 |
tgttgcgagatctcgtttgaattttagatgaa |
188 |
Q |
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| T |
2491609 |
aactgcgagatctcgttcgaattttagatgaa |
2491578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 2492273 - 2492226
Alignment:
| Q |
79 |
tgtttgaactcagatgaatatgtctaatctaataatattagtgtcgtc |
126 |
Q |
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| T |
2492273 |
tgtttgaactcagatgaacgtgtttaatctaataatatttgtgtcgtc |
2492226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 27095326 - 27095083
Alignment:
| Q |
1 |
cttatgtttttgttttgttgggtaaacatttttgacaaatcctttct-tgaaattcagatatacaactatcgcgtgtcgtgtttgaactcagatgaatat |
99 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| || | ||||||||| || ||||||| ||||||||||||||||||||||||||||||| |
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| T |
27095326 |
cttatgtttttgttttgttgggtaaacatttttgataaatccattgtctgaaattcacatgtacaactgtcgcgtgtcgtgtttgaactcagatgaatat |
27095227 |
T |
|
| Q |
100 |
gtctaatctaataatattagtgtcgtcggtcaaggtaaacacgtgaagcttatgcactgttgcgagatctcgtttgaattttagatgaaagtgtatagtt |
199 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27095226 |
gtctaatctagtaatattagtgtcgtcggtcaaggtaaacacgtgaagcttatgcactgttgcgagatctcgtttgaattttagatgaaagtgtatagtt |
27095127 |
T |
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| Q |
200 |
tannnnnnngaagaataaagtgtatagtttattaatattgatatt |
244 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |
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| T |
27095126 |
ta-ttttttgaagaataaagtgtatagtttattaatattgatatt |
27095083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 188
Target Start/End: Complemental strand, 27094296 - 27094165
Alignment:
| Q |
57 |
gatatacaactatcgcgtgtcgtgtttgaactcagatgaatatgtctaatctaataatattagtgtcgtcggtcaaggtaaacacgtgaagcttatgcac |
156 |
Q |
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||||||||||| || |||| |||||||| |||||| ||| |||||| |||| |||||||||||||||| || ||||||| |||| || |||||| |
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| T |
27094296 |
gatatacaactgtcaggtgttgtgtttgagttcagataaatgtgtctattctagtaatattagtgtcgtcaactaacataaacacctgaaactcatgcac |
27094197 |
T |
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| Q |
157 |
tgttgcgagatctcgtttgaattttagatgaa |
188 |
Q |
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|||||||||||||| |||||||||||||| |
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| T |
27094196 |
aactgcgagatctcgttcgaattttagatgaa |
27094165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 27094860 - 27094813
Alignment:
| Q |
79 |
tgtttgaactcagatgaatatgtctaatctaataatattagtgtcgtc |
126 |
Q |
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|||||||||||||||||| ||| ||||||||||||||| |||||||| |
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| T |
27094860 |
tgtttgaactcagatgaacgtgtttaatctaataatatttgtgtcgtc |
27094813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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