View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6930_high_3 (Length: 507)
Name: NF6930_high_3
Description: NF6930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6930_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 2356252 - 2356592
Alignment:
| Q |
17 |
aagaagcgcaaaagtgtatcaaagccgtggaggaaatcttgcgtttgatggggcaattcacggtgggagatgctattccttgtttagaacggtttgattt |
116 |
Q |
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| T |
2356252 |
aagaagcgcaaaagtgtatcaaagctgtagaggaaatcttgcgtttgatggggcaattcacggtgggagatgctattccttgtttagaacggtttgattt |
2356351 |
T |
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| Q |
117 |
tgacggccatgtgaaagctatgnnnnnnncttctaaggaattggacatgattttaaatgaatggttgaaggagcgtcgtaatagaacattgaatgaaaag |
216 |
Q |
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|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2356352 |
tggtggccatgtgaaagctatgaaaaaaacttctaaggaattggacatgattttaaatgaatggttgaaggagcgtcgtaatagaacattgaatgaaaag |
2356451 |
T |
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| Q |
217 |
gttgatcgtgatcaagatttcatggacgcattgctttcattgtttgatggaacaccaattgaaggg-tttgatgccgataccacaatcaaagccacgatg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2356452 |
gttgatcgtgatcaagatttcatggacgcattgctttcactgtttgatggaacaacaattgaagggttttgatgccgataccacaatcaaagccacgatg |
2356551 |
T |
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| Q |
316 |
ttggtatgtatactttcattatattcgctttatcaatacaa |
356 |
Q |
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| T |
2356552 |
ttggtatgtatactttcattatattcgctttatcaatacaa |
2356592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 376 - 504
Target Start/End: Original strand, 2357454 - 2357582
Alignment:
| Q |
376 |
agtggagggccaatggaacagaaagaaaaactctatacgaacttaccaaacactttgcttcaattgatacatgtttgaattttatttaaacttactctta |
475 |
Q |
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| T |
2357454 |
agtggagggccaatggaacagaaagaaaaactctatacgaacttaccaaacactttgcttcaattgatacatgtttgaattttatttaaacttactctta |
2357553 |
T |
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| Q |
476 |
tacacatttttataaaattttcacttcat |
504 |
Q |
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| T |
2357554 |
tacacatttttataaaattttcacttcat |
2357582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 327
Target Start/End: Original strand, 2306465 - 2306565
Alignment:
| Q |
227 |
atcaagatttcatggacgcattgctttcattgtttgatggaacaccaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgtat |
326 |
Q |
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|||||||| ||||||| | |||||||||||| ||||||||||| | || ||||||||||||| ||||||| ||||||||||||||| ||||||||||| |
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| T |
2306465 |
atcaagatatcatggatgtgttgctttcattgcttgatggaacaaccatcgaagggtttgatggtgataccataatcaaagccacgatattggtatgtat |
2306564 |
T |
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| Q |
327 |
a |
327 |
Q |
| |
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| |
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| T |
2306565 |
a |
2306565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 2362157 - 2362254
Alignment:
| Q |
227 |
atcaagatttcatggacgcattgctttcattgtttgatggaacaccaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgt |
324 |
Q |
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||||||| |||||||| || |||||||||||| |||||| ||||||||||||||||| |||| | ||||| ||||||||||| || || ||||||||| |
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| T |
2362157 |
atcaagacttcatggatgccttgctttcattgcttgatgaaacaccaattgaagggtgtgattctgatactacaatcaaagcgacaatattggtatgt |
2362254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 325
Target Start/End: Original strand, 2366767 - 2366865
Alignment:
| Q |
227 |
atcaagatttcatggacgcattgctttcattgtttgatggaacaccaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgta |
325 |
Q |
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||||||| |||||||| | ||||||||||||||||||||||| |||||||||| |||||| | ||||||| |||||||||||| | |||||||||| |
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| T |
2366767 |
atcaagacttcatggatgtgatgctttcattgtttgatggaacaacaattgaaggatttgattctgataccataatcaaagccacagtattggtatgta |
2366865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 2338806 - 2338882
Alignment:
| Q |
250 |
ctttcattgtttgatggaacaccaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgtat |
326 |
Q |
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| T |
2338806 |
ctttcattgcttgatggaacaaccattgaagggtttgacggtgataccataatcaaagccacactattggtatgtat |
2338882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 326
Target Start/End: Original strand, 2349664 - 2349922
Alignment:
| Q |
74 |
tcacggtgggagatgctattccttgtttagaacggtttgattttgacggccatgtgaaagctatgnnnnnnncttctaaggaattggacatgattttaaa |
173 |
Q |
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||||||||||||||| ||||||||||||| || |||||||||||| || ||| |||| || ||| |||||| |||| ||||| |||||| |
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| T |
2349664 |
tcacggtgggagatgttattccttgtttaaaatggtttgattttggtggtcatatgaaggccatggatgaaacttctacggaaatggacgaaattttagg |
2349763 |
T |
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| Q |
174 |
tgaatggttgaaggagcgtcg---taatagaacattgaatgaaaag---gttgatcgtgatcaagatttcatggacgcattgctttcattgtttgatgga |
267 |
Q |
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||| ||||||||||||| ||| ||| || || |||| ||||||| | ||||| |||||||| ||||||| | || |||||||| |||||||| |
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| T |
2349764 |
tgagtggttgaaggagcatcgccataaaaggactttgactgaaaaggctgatgatcaagatcaagacatcatggatgtgttaatttcattgcttgatgga |
2349863 |
T |
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| Q |
268 |
acaccaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgtat |
326 |
Q |
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| | | || |||||||||||| ||||||| ||||||||| || || ||||||||||| |
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| T |
2349864 |
aaaaccatggaagggtttgattgtgataccataatcaaagcaacaatattggtatgtat |
2349922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 199 - 327
Target Start/End: Complemental strand, 5805545 - 5805414
Alignment:
| Q |
199 |
agaacattgaatgaaaaggttgatcgtga---tcaagatttcatggacgcattgctttcattgtttgatggaacaccaattgaagggtttgatgccgata |
295 |
Q |
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||||| |||| ||||||||||||| |||| |||||| |||||||| | || ||||||||| ||||||||||| | ||||||||||||||| |||| |
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| T |
5805545 |
agaactttgagtgaaaaggttgatggtgaagatcaagacttcatggatgtgttactttcattgcttgatggaacaactattgaagggtttgattgtgata |
5805446 |
T |
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| Q |
296 |
ccacaatcaaagccacgatgttggtatgtata |
327 |
Q |
| |
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||| ||||||||||| || |||||||||||| |
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| T |
5805445 |
ccatgatcaaagccacaatattggtatgtata |
5805414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 4303928 - 4304025
Alignment:
| Q |
227 |
atcaagatttcatggacgcattgctttcattgtttgatggaacaccaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgt |
324 |
Q |
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||||||| |||||||| | ||||||||||| ||||||||||| |||||||||| |||||| | |||||| |||||||||||| || |||||||| |
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| T |
4303928 |
atcaagacttcatggatgtgatgctttcattgcttgatggaacaacaattgaaggatttgattctgataccgtaatcaaagccacaatactggtatgt |
4304025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 4303745 - 4303820
Alignment:
| Q |
56 |
tgcgtttgatggggcaattcacggtgggagatgctattccttgtttagaacggtttgattttgacggccatgtgaa |
131 |
Q |
| |
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|||||||||||||| ||||| |||||||||||| |||||| |||| || |||||||||||| ||||||||||| |
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| T |
4303745 |
tgcgtttgatgggggtgttcacagtgggagatgctcttccttttttaaaatggtttgattttgggggccatgtgaa |
4303820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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