View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6930_high_4 (Length: 397)

Name: NF6930_high_4
Description: NF6930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6930_high_4
NF6930_high_4
[»] chr4 (24 HSPs)
chr4 (18-380)||(1755350-1755713)
chr4 (146-274)||(7225163-7225290)
chr4 (220-287)||(553759-553826)
chr4 (137-348)||(8186287-8186498)
chr4 (215-318)||(548010-548113)
chr4 (146-261)||(1547718-1547833)
chr4 (148-302)||(21833251-21833405)
chr4 (217-265)||(3437631-3437679)
chr4 (228-306)||(661866-661944)
chr4 (218-343)||(642005-642130)
chr4 (152-265)||(55907686-55907799)
chr4 (220-276)||(645108-645163)
chr4 (138-186)||(659967-660015)
chr4 (292-340)||(53760229-53760277)
chr4 (148-191)||(2367993-2368036)
chr4 (152-191)||(2373559-2373598)
chr4 (151-198)||(2547222-2547269)
chr4 (313-351)||(1524243-1524281)
chr4 (215-341)||(7308546-7308672)
chr4 (145-191)||(12124517-12124563)
chr4 (237-278)||(1545881-1545922)
chr4 (135-195)||(641922-641982)
chr4 (151-183)||(2533991-2534023)
chr4 (151-191)||(5106644-5106684)
[»] chr8 (11 HSPs)
chr8 (149-339)||(17642872-17643062)
chr8 (146-348)||(18314566-18314768)
chr8 (220-351)||(17635581-17635712)
chr8 (221-351)||(32151969-32152099)
chr8 (227-276)||(28246058-28246107)
chr8 (144-186)||(14004067-14004109)
chr8 (145-195)||(32151893-32151943)
chr8 (236-353)||(34935910-34936027)
chr8 (151-191)||(18318728-18318768)
chr8 (233-324)||(5766557-5766648)
chr8 (217-321)||(14004140-14004244)
[»] chr6 (18 HSPs)
chr6 (146-351)||(9412050-9412252)
chr6 (228-276)||(6602725-6602773)
chr6 (216-352)||(7138147-7138286)
chr6 (152-276)||(6417024-6417148)
chr6 (215-322)||(7132300-7132407)
chr6 (222-284)||(6423907-6423969)
chr6 (216-322)||(7135224-7135330)
chr6 (215-276)||(8913420-8913481)
chr6 (228-284)||(6395545-6395601)
chr6 (220-276)||(11936038-11936094)
chr6 (220-276)||(11948018-11948074)
chr6 (227-276)||(6410702-6410751)
chr6 (227-284)||(19633107-19633164)
chr6 (221-273)||(14809700-14809752)
chr6 (220-284)||(28935338-28935402)
chr6 (222-273)||(6427183-6427234)
chr6 (232-276)||(6593931-6593975)
chr6 (221-273)||(6596238-6596290)
[»] chr1 (4 HSPs)
chr1 (146-341)||(7555124-7555319)
chr1 (145-350)||(19467354-19467562)
chr1 (157-338)||(9587198-9587379)
chr1 (218-258)||(17352688-17352728)
[»] chr3 (5 HSPs)
chr3 (215-341)||(51763325-51763451)
chr3 (152-308)||(13469617-13469773)
chr3 (221-341)||(51113132-51113252)
chr3 (220-276)||(1657527-1657583)
chr3 (130-186)||(51763489-51763545)
[»] chr7 (4 HSPs)
chr7 (211-357)||(10615704-10615853)
chr7 (145-287)||(10169039-10169181)
chr7 (145-287)||(10176564-10176706)
chr7 (146-351)||(7977799-7978004)
[»] chr5 (6 HSPs)
chr5 (218-351)||(32268533-32268666)
chr5 (149-254)||(28695545-28695650)
chr5 (228-278)||(20477438-20477488)
chr5 (149-191)||(28673358-28673400)
chr5 (222-352)||(41900418-41900548)
chr5 (220-276)||(28532813-28532869)
[»] chr2 (2 HSPs)
chr2 (215-305)||(45244819-45244909)
chr2 (215-265)||(1036622-1036672)
[»] scaffold1155 (1 HSPs)
scaffold1155 (237-341)||(1821-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (237-341)||(8291-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (237-341)||(30584-30688)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 1755350 - 1755713
Alignment:
Q  18 aaaagtgatcggttgtt-atgtggcgatgaaaagagagattaatcttgcggagatttaaaagtttcgatgaaagagcctcgactccattagggtagttac 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1755350 aaaagtgatcggttgtttatgtggcgatgaaaagagagattaatcttgcggagatttaaaagtttcgataaaagagcctcgactccattagggtagttac 1755449  T
Q  117 tagcatcctcgatatatgtggggttaccgaggtcgagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgat 216  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1755450 tagcatcctcgatatatgtggggttaccgaggttgagttcttcaagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgat 1755549  T
Q  217 gttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1755550 gttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaaccctttggtgggaatggcgtgttggttggagagattaaacgatgta 1755649  T
Q  317 agtttcaatgggaaacgagagatttggcagagaagtgcgtccatatcaccagaaaattgtgtga 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1755650 agtttcaatgggaaacgagagatttggcagagaagtgcgtccatatcaccagaaaagtgtgtga 1755713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 146 - 274
Target Start/End: Complemental strand, 7225290 - 7225163
Alignment:
Q  146 aggtcgagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttg 245  Q
    |||||||||||||| ||||||||||||||||| || |||||||| | |||| || ||  || |  |   |||| ||||||||||||||||||||||||||    
T  7225290 aggtcgagttcttcgagcaaagggaaacaatccgcgatgaggaacatgtcagtgctagtgacagaataaatgt-ggaacatgtgagagaggtcaaagttg 7225192  T
Q  246 taatcttttgagagaaagcttgcaaccca 274  Q
    |||| |||||||| | |||||||||||||    
T  7225191 taatattttgagaaagagcttgcaaccca 7225163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 553759 - 553826
Alignment:
Q  220 ggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatgg 287  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||| | ||||||||    
T  553759 ggaacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaatgg 553826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 348
Target Start/End: Complemental strand, 8186498 - 8186287
Alignment:
Q  137 gggttaccgaggtcgagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagagg 236  Q
    ||||||| ||| ||||||||||| || ||||| |||||||| || |||||||||| |||| || ||| || |    | ||||||||||||||||| ||||    
T  8186498 gggttactgagatcgagttcttctaggaaaggaaaacaatcggcgatgaggaagatgtcagtgctattgatagattcaatgttggaacatgtgagtgagg 8186399  T
Q  237 tcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaagtttcaatgggaaacgaga 336  Q
    ||||||||||||| ||| | |||| | || |||| ||||| |  ||||||| | ||| ||| |||||||| |  ||||| || ||||| |  ||||||||    
T  8186398 tcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgaggttcaacgaaaaacgaga 8186299  T
Q  337 gatttggcagag 348  Q
    ||  ||||||||    
T  8186298 gagatggcagag 8186287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 318
Target Start/End: Original strand, 548010 - 548113
Alignment:
Q  215 atgttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatg 314  Q
    ||||||||||| ||||||||| |||||||||||| |||| | | |||  ||||||| ||||| |||||||||  | ||||||| |||||||| | |||||    
T  548010 atgttggaacaagtgagagagttcaaagttgtaaactttcgtgcgaagacttgcaagccatttgtgggaatgaagggttggttagagagattgagcgatg 548109  T
Q  315 taag 318  Q
    ||||    
T  548110 taag 548113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 261
Target Start/End: Complemental strand, 1547833 - 1547718
Alignment:
Q  146 aggtcgagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttg 245  Q
    |||||||||||||| || |||||||||||||| |||||||  || | |||| || | ||| || | |  |||| ||||||||||||||| ||||||||||    
T  1547833 aggtcgagttcttcgagaaaagggaaacaatcggcaatgatcaacatgtcaatgctttggggacgggaaatgtgggaacatgtgagagatgtcaaagttg 1547734  T
Q  246 taatcttttgagagaa 261  Q
    |||| ||||| |||||    
T  1547733 taatgttttgggagaa 1547718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 148 - 302
Target Start/End: Complemental strand, 21833405 - 21833251
Alignment:
Q  148 gtcgagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgta 247  Q
    ||||||||||||  |||| |||||||| ||  | |||||||| | |||| |||||| || || ||| || |||||||| ||||||||||||||||| |||    
T  21833405 gtcgagttcttcgtgcaaggggaaacattcgacgatgaggaacaggtcagtggtattgaaattagcaattttggaacaagtgagagaggtcaaagtagta 21833306  T
Q  248 atcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggaga 302  Q
    || ||||| |  ||| || |||||||||  | |||||||| | ||| ||||||||    
T  21833305 atgttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggaga 21833251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 3437679 - 3437631
Alignment:
Q  217 gttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagct 265  Q
    |||||||||  |||||||||||||||||||||||||||| |||||||||    
T  3437679 gttggaacaactgagagaggtcaaagttgtaatcttttgggagaaagct 3437631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 661866 - 661944
Alignment:
Q  228 tgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagatt 306  Q
    |||||||||| ||||||||||| | ||| ||||||||| |||| ||||| | |||||||| |  |||||||||||||||    
T  661866 tgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagatt 661944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 343
Target Start/End: Original strand, 642005 - 642130
Alignment:
Q  218 ttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaa 317  Q
    ||||||||| ||||||| || ||||||| |||||| || ||||||| |||||||||||| |  ||||||| |  | ||||||||||||| |  || || |    
T  642005 ttggaacatttgagagaagttaaagttgaaatcttctgggagaaagattgcaacccattagcaggaatggtggatcggttggagagattgagtgacgtga 642104  T
Q  318 gtttcaatgggaaacgagagatttgg 343  Q
    | || ||  |||||||||||||||||    
T  642105 gatttaactggaaacgagagatttgg 642130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 265
Target Start/End: Complemental strand, 55907799 - 55907686
Alignment:
Q  152 agttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaatct 251  Q
    ||||||||||| |||||||| ||||||| ||| || |  | ||||||| || | |||  ||| |||||||||||  |||||||  ||||||||||||| |    
T  55907799 agttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttacgtagagaagcaatgttggaacaaatgagagaattcaaagttgtaatat 55907700  T
Q  252 tttgagagaaagct 265  Q
    |||| |||||||||    
T  55907699 tttgggagaaagct 55907686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 645108 - 645163
Alignment:
Q  220 ggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccatt 276  Q
    |||||||||||||||||| |||||| |||| ||||||||  ||||||||||||||||    
T  645108 ggaacatgtgagagaggttaaagttttaatgttttgaga-taagcttgcaacccatt 645163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 659967 - 660015
Alignment:
Q  138 ggttaccgaggtcgagttcttcaagcaaagggaaacaatcagcaatgag 186  Q
    |||||| || ||||||||| ||||||||||||||||||||||| |||||    
T  659967 ggttactgaagtcgagttcgtcaagcaaagggaaacaatcagctatgag 660015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 53760277 - 53760229
Alignment:
Q  292 ttggttggagagattaaacgatgtaagtttcaatgggaaacgagagatt 340  Q
    ||||||||||||||| |  ||||| ||||||||||||||||||||||||    
T  53760277 ttggttggagagattgagtgatgtgagtttcaatgggaaacgagagatt 53760229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 2368036 - 2367993
Alignment:
Q  148 gtcgagttcttcaagcaaagggaaacaatcagcaatgaggaaga 191  Q
    |||||||||||| || |||||||||||||||||||||| |||||    
T  2368036 gtcgagttcttcgagtaaagggaaacaatcagcaatgaagaaga 2367993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 2373598 - 2373559
Alignment:
Q  152 agttcttcaagcaaagggaaacaatcagcaatgaggaaga 191  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  2373598 agttcttcgagcaaagggaaacaatcagcaatgaagaaga 2373559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 2547222 - 2547269
Alignment:
Q  151 gagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcatt 198  Q
    |||||||||||| |||||||||||||||||||||| ||| || |||||    
T  2547222 gagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcatt 2547269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 1524281 - 1524243
Alignment:
Q  313 tgtaagtttcaatgggaaacgagagatttggcagagaag 351  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  1524281 tgtaaggttcaatggaaaacgagagatttggcagagaag 1524243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 341
Target Start/End: Original strand, 7308546 - 7308672
Alignment:
Q  215 atgttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatg 314  Q
    |||| |||||| |||||| ||||||||||||||||||| || || |||||| ||| |||||   ||||||||    ||| || |||||||| ||  | |     
T  7308546 atgtgggaacaagtgagacaggtcaaagttgtaatcttctgggacaaagctcgcagcccatctttgggaatgataggtttgtaggagagatcaagtgctc 7308645  T
Q  315 taagtttcaatgggaaacgagagattt 341  Q
    |||| |||| |||||||||||||||||    
T  7308646 taaggttcattgggaaacgagagattt 7308672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 12124517 - 12124563
Alignment:
Q  145 gaggtcgagttcttcaagcaaagggaaacaatcagcaatgaggaaga 191  Q
    |||||| |||||||| || |||||||||||||||||||||| |||||    
T  12124517 gaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaaga 12124563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 1545881 - 1545922
Alignment:
Q  237 tcaaagttgtaatcttttgagagaaagcttgcaacccattgg 278  Q
    ||||||||||||| ||||||||||||| | ||||||||||||    
T  1545881 tcaaagttgtaatattttgagagaaagatcgcaacccattgg 1545922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 641922 - 641982
Alignment:
Q  135 tggggttaccgaggtcgagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtc 195  Q
    ||||||||| |||||| |||||||| || |||||||||||||  ||||| ||||| |||||    
T  641922 tggggttactgaggtcaagttcttcgagtaaagggaaacaattggcaataaggaacaagtc 641982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 2533991 - 2534023
Alignment:
Q  151 gagttcttcaagcaaagggaaacaatcagcaat 183  Q
    |||||||||||| ||||||||||||||||||||    
T  2533991 gagttcttcaagtaaagggaaacaatcagcaat 2534023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 5106684 - 5106644
Alignment:
Q  151 gagttcttcaagcaaagggaaacaatcagcaatgaggaaga 191  Q
    ||||||||| || |||||||||||||||||||||| |||||    
T  5106684 gagttcttcgagtaaagggaaacaatcagcaatgaagaaga 5106644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 149 - 339
Target Start/End: Complemental strand, 17643062 - 17642872
Alignment:
Q  149 tcgagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaa 248  Q
    ||||||||||| |||||||||||||||||||| ||||||   | ||||  | || ||||||   | |||| |||||| ||||||||||||||||||||||    
T  17643062 tcgagttcttctagcaaagggaaacaatcagcgatgagggtaaggtcagagctacggagatttcccatgtgggaacaagtgagagaggtcaaagttgtaa 17642963  T
Q  249 tcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaagtttcaatgggaaacgagagat 339  Q
    | || || ||||||||||| ||||||||||||||||||| | | |||||||||||||| |  ||||| ||||||||||| |||| ||||||    
T  17642962 tattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatgtgagtttcaatggaaaacaagagat 17642872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 146 - 348
Target Start/End: Complemental strand, 18314768 - 18314566
Alignment:
Q  146 aggtcgagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcg-atgttggaacatgtgagagaggtcaaagtt 244  Q
    |||||||||||||| |||||||||||||||||||||||||||||||  ||| ||  ||||||| ||  | ||||  ||||||| ||| ||||||||||||    
T  18314768 aggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatggaga-gattgaatgtaagaacatgagagtgaggtcaaagtt 18314670  T
Q  245 gtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaagtttcaatgggaaacgagagatttggc 344  Q
    ||||| |||||||||||| || | || ||||| | |||||||| | ||||   ||||||||  |   || | ||||||||||||||| |||||||||| |    
T  18314669 gtaatattttgagagaaaactcgtaagccatttgcgggaatggtgggttgacaggagagatcgagtcatttgagtttcaatgggaaaagagagatttgac 18314570  T
Q  345 agag 348  Q
    ||||    
T  18314569 agag 18314566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 351
Target Start/End: Complemental strand, 17635712 - 17635581
Alignment:
Q  220 ggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaagt 319  Q
    |||||| ||||||||||||||||||||||| ||  | ||||||||| | |||||||| || ||||||| | |||||||||| ||||| |  ||| | |||    
T  17635712 ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgagtgatatgagt 17635613  T
Q  320 ttcaatgggaaacgagagatttggcagagaag 351  Q
    |||||||| ||| ||||||||| |||||||||    
T  17635612 ttcaatggaaaaggagagatttcgcagagaag 17635581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 351
Target Start/End: Original strand, 32151969 - 32152099
Alignment:
Q  221 gaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaagtt 320  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||| | ||||||    || ||||   ||| |||||||||||| |  ||||| || |    
T  32151969 gaacaagtgagagaggtcaaagttgtaatgttttgggagaaagcttgtatcccattcacaggtatggtaagtttgttggagagattgagtgatgtgaggt 32152068  T
Q  321 tcaatgggaaacgagagatttggcagagaag 351  Q
    |||| |||||| ||||||||||||| |||||    
T  32152069 tcaacgggaaatgagagatttggcaaagaag 32152099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 28246107 - 28246058
Alignment:
Q  227 gtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccatt 276  Q
    ||||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  28246107 gtgagagaggttaaagttttaatgttttgagagaaagcttgcaacccatt 28246058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 14004067 - 14004109
Alignment:
Q  144 cgaggtcgagttcttcaagcaaagggaaacaatcagcaatgag 186  Q
    |||||||||||||||| |||||||| |||||||||||||||||    
T  14004067 cgaggtcgagttcttctagcaaaggaaaacaatcagcaatgag 14004109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 32151893 - 32151943
Alignment:
Q  145 gaggtcgagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtc 195  Q
    |||||| |||||||| ||||||||||||||||| ||||||||||| |||||    
T  32151893 gaggtcaagttcttcgagcaaagggaaacaatcggcaatgaggaacaagtc 32151943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 353
Target Start/End: Complemental strand, 34936027 - 34935910
Alignment:
Q  236 gtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaagtttcaatgggaaacgag 335  Q
    |||||||||||||| ||||| |||||| || |||| |||||    ||||||  | | |||||||||||||| |  |||||||| ||||||||||||| ||    
T  34936027 gtcaaagttgtaatattttgtgagaaaactcgcaaaccattttgtggaatgatgggatggttggagagattgagtgatgtaaggttcaatgggaaactag 34935928  T
Q  336 agatttggcagagaagtg 353  Q
    | ||||| || |||||||    
T  34935927 aaatttgacatagaagtg 34935910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 18318768 - 18318728
Alignment:
Q  151 gagttcttcaagcaaagggaaacaatcagcaatgaggaaga 191  Q
    |||||||||||| |||||||||||||| |||||||||||||    
T  18318768 gagttcttcaaggaaagggaaacaatctgcaatgaggaaga 18318728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 5766648 - 5766557
Alignment:
Q  233 gaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaagtttcaa 324  Q
    ||||||||||||||||| || |||||||||||| |||| ||||| |  |||| |  | |||||||||| ||||| | |||||| ||||||||    
T  5766648 gaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagtttcaa 5766557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 321
Target Start/End: Original strand, 14004140 - 14004244
Alignment:
Q  217 gttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgta 316  Q
    |||||||||  | || ||||||||||||||||| || |||||||||||| |||| ||||| |  |||| |  | |||||||||| ||||| | ||||||     
T  14004140 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgggttggttggaaagattgagcgatgtg 14004239  T
Q  317 agttt 321  Q
    |||||    
T  14004240 agttt 14004244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 146 - 351
Target Start/End: Original strand, 9412050 - 9412252
Alignment:
Q  146 aggtcgagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttg 245  Q
    |||| |||||||||||||||||||||||| ||||||||||| || ||||||||| ||| || |  | | ||  | ||  | ||||  ||||| |||||||    
T  9412050 aggttgagttcttcaagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaacccattcttgaggaagtgaatgaggttaaagttg 9412149  T
Q  246 taatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaagtttcaatgggaaacgagagatttggca 345  Q
    |||| ||||| ||||||||| ||||||||   | |||||||| | | ||||||||||||||||  ||||  ||||||||||| |||||||||||||| |     
T  9412150 taatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttcaatggaaaacgagagatttgacc 9412246  T
Q  346 gagaag 351  Q
    ||||||    
T  9412247 gagaag 9412252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 6602773 - 6602725
Alignment:
Q  228 tgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccatt 276  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6602773 tgagagaggtcaaagtagtaatcttttgagagaaagcttgcaacccatt 6602725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 352
Target Start/End: Original strand, 7138147 - 7138286
Alignment:
Q  216 tgttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgt 315  Q
    ||||||||||   |||||| | |||||||||||| ||||| ||||||||| |||||||||| |  |||| || |||||||||||||| | ||| ||||||    
T  7138147 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgt 7138246  T
Q  316 aagtttc---aatgggaaacgagagatttggcagagaagt 352  Q
     ||||||   | ||||||| ||||||||| || |||||||    
T  7138247 gagtttctttagtgggaaatgagagattttgcggagaagt 7138286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 276
Target Start/End: Original strand, 6417024 - 6417148
Alignment:
Q  152 agttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaatct 251  Q
    ||||||||||||||||||||||| || ||||| ||||| |  ||| |    | || || | |||||| |||||| ||||||||||||||||||||| |||    
T  6417024 agttcttcaagcaaagggaaacattctgcaataaggaacagatcactaccgttgaaattaacgatgtgggaacaagtgagagaggtcaaagttgtattct 6417123  T
Q  252 tttgagagaaagcttgcaacccatt 276  Q
    |||| ||||||||| | ||||||||    
T  6417124 tttgggagaaagctcgtaacccatt 6417148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 322
Target Start/End: Original strand, 7132300 - 7132407
Alignment:
Q  215 atgttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatg 314  Q
    |||||||||||   |||||| | |||||||||||| ||||| ||||||||| |||||||||| |  |||| || |||||||||||||| | ||| |||||    
T  7132300 atgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatg 7132399  T
Q  315 taagtttc 322  Q
    | ||||||    
T  7132400 tgagtttc 7132407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 6423907 - 6423969
Alignment:
Q  222 aacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaa 284  Q
    |||| |||||||||||||||||||| || ||||| ||||||||| |||||||||| |||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccatttgtgggaa 6423969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 322
Target Start/End: Original strand, 7135224 - 7135330
Alignment:
Q  216 tgttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgt 315  Q
    ||||||||||   |||||| | |||||||||||| ||||| ||||||||| |||||||||| |  |||| || |||||||||||||| | ||| ||||||    
T  7135224 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgt 7135323  T
Q  316 aagtttc 322  Q
     ||||||    
T  7135324 gagtttc 7135330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 8913481 - 8913420
Alignment:
Q  215 atgttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccatt 276  Q
    |||||||||||  ||||||||||||||||||||||||||| ||| ||| || ||||||||||    
T  8913481 atgttggaacaattgagagaggtcaaagttgtaatctttttagataaaactagcaacccatt 8913420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 6395545 - 6395601
Alignment:
Q  228 tgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaa 284  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||||||  |||||||    
T  6395545 tgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaa 6395601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 11936094 - 11936038
Alignment:
Q  220 ggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccatt 276  Q
    |||||| ||||||||||| ||| || |||| ||||||||||||||||||||||||||    
T  11936094 ggaacacgtgagagaggttaaatttttaatgttttgagagaaagcttgcaacccatt 11936038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 11948074 - 11948018
Alignment:
Q  220 ggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccatt 276  Q
    |||||| ||||||||||| ||| || |||| ||||||||||||||||||||||||||    
T  11948074 ggaacacgtgagagaggttaaatttttaatgttttgagagaaagcttgcaacccatt 11948018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 6410702 - 6410751
Alignment:
Q  227 gtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccatt 276  Q
    |||| |||||||||||||||||| ||||| |||||| |||||||||||||    
T  6410702 gtgaaagaggtcaaagttgtaatgttttgggagaaaacttgcaacccatt 6410751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 19633107 - 19633164
Alignment:
Q  227 gtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaa 284  Q
    |||||||||||||||||||||||  |||  ||||||||| |||||||||| |||||||    
T  19633107 gtgagagaggtcaaagttgtaatgctttcggagaaagctcgcaacccatttgtgggaa 19633164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 14809700 - 14809752
Alignment:
Q  221 gaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaaccc 273  Q
    ||||| |||||||||| |||||||||||| ||||| |||||| ||||||||||    
T  14809700 gaacaagtgagagaggccaaagttgtaatgttttgggagaaatcttgcaaccc 14809752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 28935338 - 28935402
Alignment:
Q  220 ggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaa 284  Q
    |||||||||||| ||||| ||||||||||| ||||| ||||| ||| ||||||| || |||||||    
T  28935338 ggaacatgtgagtgaggttaaagttgtaatgttttgggagaaggctcgcaacccttttgtgggaa 28935402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 6427183 - 6427234
Alignment:
Q  222 aacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaaccc 273  Q
    |||| |||||| |||||||||||||||| ||||| |||||| ||||||||||    
T  6427183 aacaagtgagaaaggtcaaagttgtaatattttgggagaaaacttgcaaccc 6427234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 6593975 - 6593931
Alignment:
Q  232 agaggtcaaagttgtaatcttttgagagaaagcttgcaacccatt 276  Q
    |||||||||||||||||||||||| |||||| || |||| |||||    
T  6593975 agaggtcaaagttgtaatcttttgtgagaaaactcgcaaaccatt 6593931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 6596290 - 6596238
Alignment:
Q  221 gaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaaccc 273  Q
    ||||| |||||||||||||||||||| || ||||| |||||| || |||||||    
T  6596290 gaacaagtgagagaggtcaaagttgttatgttttgggagaaaactcgcaaccc 6596238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 146 - 341
Target Start/End: Original strand, 7555124 - 7555319
Alignment:
Q  146 aggtcgagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttg 245  Q
    |||| ||||||||| |||||||||||||| ||||||||||| || ||||||||| ||| || |  | | || |||||||| ||||| ||||| |||||||    
T  7555124 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 7555223  T
Q  246 taatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaagtttcaatgggaaacgagagattt 341  Q
    |||| ||||| ||||||||| |||| ||| | |  || |||| | |||||||||| | || ||  ||||| || ||||||||||||| ||||||||    
T  7555224 taatattttgggagaaagctcgcaatccaattgcagggatggtgggttggttggaaatatcaagtgatgttaggttcaatgggaaacaagagattt 7555319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 350
Target Start/End: Complemental strand, 19467562 - 19467354
Alignment:
Q  145 gaggtcgagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagtt 244  Q
    ||||| ||||||||| |||||||| ||||| || || |||||||| | |||| |||||| || ||  || |||| | |||| ||||||||||||||||||    
T  19467562 gaggttgagttcttcgagcaaaggaaaacattccgcgatgaggaacaggtcagtggtattgaaatctgcaatgtcgaaacaagtgagagaggtcaaagtt 19467463  T
Q  245 gtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaag---tttcaatgggaaacgagagattt 341  Q
    ||||| ||||||| |||| || |||||||||| | |||||||| ||||  |||||||| | | |  ||||| ||   ||||||||||||| |||||||||    
T  19467462 gtaatattttgagtgaaaactcgcaacccatttgcgggaatggtgtgtctgttggagataatgagagatgtgagttttttcaatgggaaatgagagattt 19467363  T
Q  342 ggcagagaa 350  Q
      |||||||    
T  19467362 tacagagaa 19467354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 338
Target Start/End: Original strand, 9587198 - 9587379
Alignment:
Q  157 ttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaatcttttga 256  Q
    |||||| ||||||||||| |  ||||||||||| ||||||||  ||| || |  |  |||||| |||||  ||||||| ||||| ||||||||||||       
T  9587198 ttcaagtaaagggaaacatttggcaatgaggaacaagtcattactattgaaaacacggatgtttgaacaaatgagagatgtcaacgttgtaatctttaag 9587297  T
Q  257 gagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaagtttcaatgggaaacgagaga 338  Q
    |||||||| ||||||||| | | |||||||  |  |||  |||||||||| | |||||| |||||||||||||||| |||||    
T  9587298 gagaaagcatgcaacccaattgcgggaatgcaggattgactggagagattgagcgatgtgagtttcaatgggaaacaagaga 9587379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 17352688 - 17352728
Alignment:
Q  218 ttggaacatgtgagagaggtcaaagttgtaatcttttgaga 258  Q
    ||||||||  ||||||||||||| |||||||||||||||||    
T  17352688 ttggaacaaatgagagaggtcaatgttgtaatcttttgaga 17352728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 341
Target Start/End: Complemental strand, 51763451 - 51763325
Alignment:
Q  215 atgttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatg 314  Q
    |||| |||||| |||||||| |||||||||||||||||||| || ||| || |||||||||| || |||| ||   | || |||||||||||||  ||||    
T  51763451 atgtgggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttgtaggaaaggtaagctgtttggagagattaagtgatg 51763352  T
Q  315 taagtttcaatgggaaacgagagattt 341  Q
    | |||||||||||||||||||||||||    
T  51763351 tgagtttcaatgggaaacgagagattt 51763325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 308
Target Start/End: Complemental strand, 13469773 - 13469617
Alignment:
Q  152 agttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaatct 251  Q
    |||||||||||||| || ||||| || ||||| ||||| | |||| || ||| || || ||| |||| |||||| |||||||||||||  |||||| |||    
T  13469773 agttcttcaagcaacggaaaacattctgcaataaggaacaggtcactgctattgaaattagcaatgtgggaacaagtgagagaggtcagcgttgtattct 13469674  T
Q  252 tttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaa 308  Q
    |||| ||||||||| | |||||||| |  ||||  | | ||||||||||||||||||    
T  13469673 tttgggagaaagctcgtaacccatttgcaggaacagtgggttggttggagagattaa 13469617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 341
Target Start/End: Complemental strand, 51113252 - 51113132
Alignment:
Q  221 gaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaagtt 320  Q
    ||||| ||||||||||||| ||||||||| ||||  ||||||||| |||| ||||| ||||||||   |  || |||||||| ||| |  || |||||||    
T  51113252 gaacaagtgagagaggtcagagttgtaatattttccgagaaagctcgcaatccatttgtgggaataatgcttttgttggagatattgagtgaagtaagtt 51113153  T
Q  321 tcaatgggaaacgagagattt 341  Q
    |||||||||||||||||||||    
T  51113152 tcaatgggaaacgagagattt 51113132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 1657527 - 1657583
Alignment:
Q  220 ggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccatt 276  Q
    |||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  1657527 ggaacacgtgagagaggttaaagttttaatgttttgagagaaagcttgcaacccatt 1657583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 51763545 - 51763489
Alignment:
Q  130 atatgtggggttaccgaggtcgagttcttcaagcaaagggaaacaatcagcaatgag 186  Q
    ||||||||||| || ||||||||||||||| ||||| |||||||| || ||||||||    
T  51763545 atatgtggggtaactgaggtcgagttcttcgagcaatgggaaacattccgcaatgag 51763489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 211 - 357
Target Start/End: Original strand, 10615704 - 10615853
Alignment:
Q  211 agcgatgttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaac 310  Q
    |||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||| | |||||  | | |||||||||| | |||||      
T  10615704 agcgatgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaactgtgggttggttggaaatattaagt 10615803  T
Q  311 gatgtaagtttca---atgggaaacgagagatttggcagagaagtgcgtc 357  Q
    ||||| |  ||||   |||||||||||||||||| || |||||| |||||    
T  10615804 gatgtgatgttcaatgatgggaaacgagagattttgcggagaagagcgtc 10615853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 287
Target Start/End: Complemental strand, 10169181 - 10169039
Alignment:
Q  145 gaggtcgagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagtt 244  Q
    ||||| |||||||||||||||||| ||||| || || || || || |||||| | ||||  | || | | |||| |||||| ||||||||||||||||||    
T  10169181 gaggttgagttcttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagtt 10169082  T
Q  245 gtaatcttttgagagaaagcttgcaacccattggtgggaatgg 287  Q
     |||| |||||||||||| || |||||||||| | ||||||||    
T  10169081 ctaatattttgagagaaaactcgcaacccatttgcgggaatgg 10169039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 287
Target Start/End: Complemental strand, 10176706 - 10176564
Alignment:
Q  145 gaggtcgagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagtt 244  Q
    ||||| |||||||||||||||||| ||||| || || || || || |||||| | ||||  | || | | |||| |||||| ||||||||||||||||||    
T  10176706 gaggttgagttcttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagtt 10176607  T
Q  245 gtaatcttttgagagaaagcttgcaacccattggtgggaatgg 287  Q
     |||| |||||||||||| || |||||||||| | ||||||||    
T  10176606 ctaatattttgagagaaaactcgcaacccatttgcgggaatgg 10176564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 351
Target Start/End: Original strand, 7977799 - 7978004
Alignment:
Q  146 aggtcgagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttg 245  Q
    |||||||||||||||||||||||||||||||| || ||||| || | ||  ||| |||  | |    | ||||| |||||| |||| |||||||||||||    
T  7977799 aggtcgagttcttcaagcaaagggaaacaatctgctatgagaaacatgtggttgatattaatagattcaatgttagaacatttgagtgaggtcaaagttg 7977898  T
Q  246 taatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaagtttcaatgggaaacgagagatttggca 345  Q
     ||| ||||| |||||| || |||||||||  |  |||||||   | |||||||||||||| |  || || | |||||||||||||| ||| |||||||     
T  7977899 caatattttgggagaaaactggcaacccataagccggaatggtagggtggttggagagattgagtgacgtgattttcaatgggaaacaagaaatttggcg 7977998  T
Q  346 gagaag 351  Q
    ||||||    
T  7977999 gagaag 7978004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 218 - 351
Target Start/End: Original strand, 32268533 - 32268666
Alignment:
Q  218 ttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaa 317  Q
    |||||||| |||||||||||||||||||||||||| |  || ||||  ||||||||| | |||||||||  |  || ||| |||||||| |  || || |    
T  32268533 ttggaacaagtgagagaggtcaaagttgtaatcttcttcgaaaaagtctgcaacccaattgtgggaatgatgcatttgtttgagagattgagtgacgtga 32268632  T
Q  318 gtttcaatgggaaacgagagatttggcagagaag 351  Q
    |||||||||| |||||||||||||| ||||||||    
T  32268633 gtttcaatggaaaacgagagatttgacagagaag 32268666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 28695650 - 28695545
Alignment:
Q  149 tcgagttcttcaagcaaagggaaacaatcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaa 248  Q
    |||||||||||  |||||||||| ||||||||||||| |||||  ||| || ||||||||   || | || |||||| ||||||||||||| ||||||||    
T  28695650 tcgagttcttcgggcaaagggaagcaatcagcaatgaagaagagatcagtgctatggagagttgcaaggtgggaacaagtgagagaggtcatagttgtaa 28695551  T
Q  249 tctttt 254  Q
    | ||||    
T  28695550 tgtttt 28695545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 20477488 - 20477438
Alignment:
Q  228 tgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattgg 278  Q
    ||||||||||||||||| |||| ||||| ||||| || |||||||||||||    
T  20477488 tgagagaggtcaaagttttaatattttgggagaatgcatgcaacccattgg 20477438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 28673400 - 28673358
Alignment:
Q  149 tcgagttcttcaagcaaagggaaacaatcagcaatgaggaaga 191  Q
    ||||||||||| ||||||||||| ||||||||||||| |||||    
T  28673400 tcgagttcttcgagcaaagggaagcaatcagcaatgaagaaga 28673358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 352
Target Start/End: Complemental strand, 41900548 - 41900418
Alignment:
Q  222 aacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaagttt 321  Q
    |||| ||||||||||||||||||||||||||||  || |||||| | ||||||   | ||| ||| ||  |||||  ||||| || |  ||||| |||||    
T  41900548 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagttt 41900449  T
Q  322 caatgggaaacgagagatttggcagagaagt 352  Q
    |||||| ||| |||||||||| || ||||||    
T  41900448 caatggaaaatgagagatttgacaaagaagt 41900418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 28532813 - 28532869
Alignment:
Q  220 ggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccatt 276  Q
    |||||| |||| |||||||||||||||||| ||||| || |||||| |||| |||||    
T  28532813 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatt 28532869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 305
Target Start/End: Complemental strand, 45244909 - 45244819
Alignment:
Q  215 atgttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagat 305  Q
    |||||| ||||  |||||||||||||| || ||||  |||| |||||||||||||||||||| | |||||||| |  ||||| ||||||||    
T  45244909 atgttgtaacaaatgagagaggtcaaatttctaatagtttgggagaaagcttgcaacccattcgcgggaatggtgctttggtcggagagat 45244819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 1036672 - 1036622
Alignment:
Q  215 atgttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagct 265  Q
    |||||||||||  ||||||| |||||||||||||| ||||| |||||||||    
T  1036672 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagct 1036622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 341
Target Start/End: Complemental strand, 1925 - 1821
Alignment:
Q  237 tcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaagtttcaatgggaaacgaga 336  Q
    ||||||||||||| ||||| || ||| || |||||||||  | ||||||   | |||||| ||||||||| |  ||||| || |||||||||||||||||    
T  1925 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 1826  T
Q  337 gattt 341  Q
    |||||    
T  1825 gattt 1821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 341
Target Start/End: Original strand, 8291 - 8395
Alignment:
Q  237 tcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaagtttcaatgggaaacgaga 336  Q
    ||||||||||||| ||||| || ||| || |||||||||  | ||||||   | |||||| ||||||||| |  ||||| || |||||||||||||||||    
T  8291 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 8390  T
Q  337 gattt 341  Q
    |||||    
T  8391 gattt 8395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 341
Target Start/End: Complemental strand, 30688 - 30584
Alignment:
Q  237 tcaaagttgtaatcttttgagagaaagcttgcaacccattggtgggaatggcgtgttggttggagagattaaacgatgtaagtttcaatgggaaacgaga 336  Q
    ||||||||||||| ||||| || ||| || |||||||||  | ||||||   | |||||| ||||||||| |  ||||| || |||||||||||||||||    
T  30688 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 30589  T
Q  337 gattt 341  Q
    |||||    
T  30588 gattt 30584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University