View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6930_high_5 (Length: 296)

Name: NF6930_high_5
Description: NF6930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6930_high_5
NF6930_high_5
[»] chr8 (3 HSPs)
chr8 (14-279)||(9675481-9675746)
chr8 (14-279)||(9692503-9692768)
chr8 (143-279)||(21463975-21464111)
[»] chr4 (3 HSPs)
chr4 (14-279)||(35162513-35162778)
chr4 (14-246)||(35155493-35155725)
chr4 (11-279)||(15556084-15556352)
[»] chr2 (3 HSPs)
chr2 (100-279)||(20144790-20144969)
chr2 (100-279)||(20168805-20168984)
chr2 (100-279)||(20359300-20359479)
[»] chr3 (23 HSPs)
chr3 (110-234)||(5160445-5160569)
chr3 (111-275)||(16025656-16025820)
chr3 (125-277)||(47397095-47397247)
chr3 (110-235)||(5156416-5156541)
chr3 (110-235)||(46526254-46526379)
chr3 (109-232)||(45883565-45883688)
chr3 (111-235)||(46539169-46539293)
chr3 (14-234)||(46484123-46484343)
chr3 (148-235)||(46544681-46544768)
chr3 (112-275)||(46236580-46236746)
chr3 (14-234)||(46474004-46474224)
chr3 (125-234)||(51944076-51944185)
chr3 (14-279)||(46479865-46480130)
chr3 (14-70)||(45883729-45883785)
chr3 (127-279)||(46498136-46498288)
chr3 (175-235)||(46532155-46532215)
chr3 (127-235)||(46554013-46554121)
chr3 (127-200)||(4613703-4613776)
chr3 (14-77)||(47414180-47414243)
chr3 (127-200)||(4581246-4581319)
chr3 (16-77)||(5160351-5160412)
chr3 (129-221)||(45903145-45903237)
chr3 (130-234)||(46490900-46491004)
[»] chr7 (5 HSPs)
chr7 (208-279)||(17736196-17736267)
chr7 (182-279)||(17708516-17708613)
chr7 (208-279)||(16722419-16722490)
chr7 (208-279)||(17699433-17699504)
chr7 (182-235)||(17718340-17718393)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 9675746 - 9675481
Alignment:
Q  14 ttcttccaaatgcaaaagatggactatcggctatggttgaaaaggtggcttctgaatttgagttcctagagccaaagcttccttataaacgagtgaaagt 113  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9675746 ttcttccaaatgcaaaaggtggactatcggctatggttgaaaaggtggcttctgaatttgagttcctagagcccaagcttccttataaacgagtgaaagt 9675647  T
Q  114 aggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggt 213  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9675646 aggtaatttccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggt 9675547  T
Q  214 ttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtct 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9675546 ttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtct 9675481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 9692768 - 9692503
Alignment:
Q  14 ttcttccaaatgcaaaagatggactatcggctatggttgaaaaggtggcttctgaatttgagttcctagagccaaagcttccttataaacgagtgaaagt 113  Q
    ||||||||||||||||||||| |||||  ||||||||||| || ||||||||||||||||||||||||||||  |||||||||||||||| ||||| | |    
T  9692768 ttcttccaaatgcaaaagatgtactattagctatggttgagaaagtggcttctgaatttgagttcctagagcacaagcttccttataaactagtgagaat 9692669  T
Q  114 aggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||||||||||||||||||    
T  9692668 aggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgtatgacgaaggagttaggagtgagtttacctttctcttctggaggt 9692569  T
Q  214 ttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtct 279  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9692568 ttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtct 9692503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 279
Target Start/End: Complemental strand, 21464111 - 21463975
Alignment:
Q  143 tttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaagg 242  Q
    |||| ||||||||||||  ||||   ||| |||| |||||||| ||| ||||||||||||||   |||| |||||||||||||||||||||||     |     
T  21464111 tttcttttgggcttgaatgttctgatatgctgaaagagctaggcgtggttttacctttctctgaaggagctttgacaaaaatggtggactctcgaattgc 21464012  T
Q  243 tcaagacttttctgtttccaacatatttcacaagtct 279  Q
    |||| || ||| ||| |||||||||||||||||||||    
T  21464011 tcaaaacctttatgtgtccaacatatttcacaagtct 21463975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 35162513 - 35162778
Alignment:
Q  14 ttcttccaaatgcaaaagatggactatcggctatggttgaaaaggtggcttctgaatttgagttcctagagccaaagcttccttataaacgagtgaaagt 113  Q
    |||||||||||||||||||||| || || ||| ||||||| |||||||||||||| |||||| ||||||||   | |||||||| |||  |||||  |||    
T  35162513 ttcttccaaatgcaaaagatggcctgtcagctttggttgagaaggtggcttctgattttgagctcctagagaacatgcttccttgtaatagagtgccagt 35162612  T
Q  114 aggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggt 213  Q
    |||||  ||| ||||||||| |||||||||||||| ||||||||||||||||||  || ||||||| |||||||||||||||||||||||||||||||||    
T  35162613 aggtggcttcaaaattccaaaattcaaattttcatatgggcttgaaacttctcgtgtgctgaaggatctaggagtgattttacctttctcttctggaggt 35162712  T
Q  214 ttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtct 279  Q
    |||||||||||||||||||| |||||||||||| || |||  ||||||||||||||||||||||||    
T  35162713 ttgacaaaaatggtggactcacttgaaggtcaaaaccttttagtttccaacatatttcacaagtct 35162778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 35155493 - 35155725
Alignment:
Q  14 ttcttccaaatgcaaaagatggactatcggctatggttgaaaaggtggcttctgaatttgagttcctagagccaaagcttccttataaacgagtgaaagt 113  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||  |||||||||||||||  || |  |||    
T  35155493 ttcttccaaatgcaaaagatggactatcagctttggttgagaaggtggcttctgaatttgagttgctagagcacaagcttccttataaaacagcgcgagt 35155592  T
Q  114 aggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggt 213  Q
    |||||  ||| |||||||||||||||||||||||| |  ||||||| ||||||  ||| |||| || ||||||||||||||||||||||||||||| |||    
T  35155593 aggtggcttcaaaattccaagattcaaattttcatctaagcttgaatcttctcatatgctgaaagacctaggagtgattttacctttctcttctgggggt 35155692  T
Q  214 ttgacaaaaatggtggactctcttgaaggtcaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  35155693 ttgacaaaaatggtggactctcttgaaggtcaa 35155725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 15556084 - 15556352
Alignment:
Q  11 ttattcttccaaatgcaaaagatggactatcggctatggttgaaaaggtggcttctgaatttgagttcctagagccaaagctt---ccttataaacgagt 107  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||||||||||||| |||| |||||| ||| | |  ||| ||   | || ||||   ||    
T  15556084 ttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaatctttctaaa---gt 15556180  T
Q  108 gaaagtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttct 207  Q
     ||||| ||||| |||  ||||||||  |||||  | ||||||||| |||||||||||   ||| ||||||| ||||||||| |||||||||||||| |     
T  15556181 caaagttggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctccc 15556280  T
Q  208 ggaggtttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtct 279  Q
    ||||||||||| |||||||||||||| ||||  ||||||||| | | |||||| |||||||| || ||||||    
T  15556281 ggaggtttgactaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtct 15556352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 100 - 279
Target Start/End: Original strand, 20144790 - 20144969
Alignment:
Q  100 aaacgagtgaaagtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctt 199  Q
    |||| ||||||||||||||||||  ||||||||||||||||  ||||||||||||||||||||  |   |   | |||||| |||||||| ||||||| |    
T  20144790 aaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtggttttaccat 20144889  T
Q  200 tctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtct 279  Q
    ||| | |||||||||||||||||||||||||||||||||  ||||||  | ||||||||||  |||||||||||||||||    
T  20144890 tctttcctggaggtttgacaaaaatggtggactctcttgcgggtcaaagcctttctgtttctcacatatttcacaagtct 20144969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 100 - 279
Target Start/End: Complemental strand, 20168984 - 20168805
Alignment:
Q  100 aaacgagtgaaagtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctt 199  Q
    |||| ||||||||||||||| ||  ||||||| ||||||||  ||||||||||||||||||||  |   |   | |||| | |||||||||||||||| |    
T  20168984 aaacaagtgaaagtaggtgactttaaaattcctagattcaatgtttcatttgggcttgaaactagtgataccctaaaggggttaggagtgattttaccat 20168885  T
Q  200 tctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtct 279  Q
    ||| | ||||||||||||||||||||||||| ||| | |  ||||||  | ||| ||||||  |||||||||||||||||    
T  20168884 tctttcctggaggtttgacaaaaatggtggattctatcgcgggtcaaagcctttttgtttctcacatatttcacaagtct 20168805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 100 - 279
Target Start/End: Original strand, 20359300 - 20359479
Alignment:
Q  100 aaacgagtgaaagtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctt 199  Q
    |||| ||||||||||||||||||  ||||||||||||||||  ||||||||||||||||||||  |   |   | |||||| ||||||||| |||||| |    
T  20359300 aaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtgactttaccat 20359399  T
Q  200 tctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtct 279  Q
    ||| | |||||||||||| |||||||||||| ||| | |  ||||||  | ||| ||||||   ||||||||||||||||    
T  20359400 tctttcctggaggtttgaaaaaaatggtggattctatcgcgggtcaaagcctttttgtttctcgcatatttcacaagtct 20359479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 5160445 - 5160569
Alignment:
Q  110 aagtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctgg 209  Q
    ||||||||||||||  |||||||||||||||| ||||||||| |||||||||||||   ||| |||||||| ||||||||| |||||||||| ||  ||     
T  5160445 aagtaggtgaattcagaattccaagattcaaaatttcatttgagcttgaaacttctgatatgctgaaggagttaggagtgactttacctttcactcgtga 5160544  T
Q  210 aggtttgacaaaaatggtggactct 234  Q
    |||||||||||||||||||||||||    
T  5160545 aggtttgacaaaaatggtggactct 5160569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 111 - 275
Target Start/End: Original strand, 16025656 - 16025820
Alignment:
Q  111 agtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctgga 210  Q
    ||||||||| |||  ||||||||| |||||  ||||||||||| |||||||||||   ||| |||||||||| |||||  |||||||||||||| |||||    
T  16025656 agtaggtgatttcagaattccaaggttcaaggtttcatttgggtttgaaacttctgatatgctgaaggagcttggagtagttttacctttctctcctgga 16025755  T
Q  211 ggtttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaa 275  Q
    |||||||||||||||||||||| |||||||  ||||||| | | ||||||   ||||||||||||    
T  16025756 ggtttgacaaaaatggtggactttcttgaacatcaagacctctttgtttctcgcatatttcacaa 16025820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 125 - 277
Target Start/End: Complemental strand, 47397247 - 47397095
Alignment:
Q  125 aaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaat 224  Q
    ||||||||||||||||||||||| || ||||||||||||||   ||| |||||||| ||||||||||||||||||||||    |||||||| ||||||||    
T  47397247 aaattccaagattcaaattttcaatttggcttgaaacttctgatatgttgaaggagttaggagtgattttacctttctccctcggaggtttaacaaaaat 47397148  T
Q  225 ggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagt 277  Q
    | |||||| ||| |  |||||| || ||| |||||||||||||||||| ||||    
T  47397147 gatggactttctagcgggtcaaaacctttttgtttccaacatatttcagaagt 47397095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 110 - 235
Target Start/End: Original strand, 5156416 - 5156541
Alignment:
Q  110 aagtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcga-atgatgaaggagctaggagtgattttacctttctcttctg 208  Q
    |||||| |||||||  |||||||||||||||| ||||||||| |||||||||||| ||| ||| | || |||||||||||||||||||||||| ||  ||    
T  5156416 aagtagttgaattcagaattccaagattcaaaatttcatttgagcttgaaacttc-cgatatgttcaaagagctaggagtgattttacctttcactcgtg 5156514  T
Q  209 gaggtttgacaaaaatggtggactctc 235  Q
    |||||||||||||||||||||||||||    
T  5156515 gaggtttgacaaaaatggtggactctc 5156541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 235
Target Start/End: Complemental strand, 46526379 - 46526254
Alignment:
Q  110 aagtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctgg 209  Q
    |||||||||| |||  |||||||| ||||||||||||||||| |||||| ||||||| |||| |||| ||| ||| |||||||||||||||||||| |||    
T  46526379 aagtaggtgatttcagaattccaaaattcaaattttcatttgagcttgacacttctcaaatgttgaaagagttagaagtgattttacctttctcttgtgg 46526280  T
Q  210 aggtttgacaaaaatggtggactctc 235  Q
     ||||||||||| || ||||||||||    
T  46526279 gggtttgacaaatattgtggactctc 46526254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 109 - 232
Target Start/End: Complemental strand, 45883688 - 45883565
Alignment:
Q  109 aaagtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctg 208  Q
    ||||||||||| |||  |||||||||||||||  |||||||||||||||||||||||   ||| |||||||| |||||||| ||| ||||||||||  ||    
T  45883688 aaagtaggtgacttcagaattccaagattcaatgtttcatttgggcttgaaacttctaatatgttgaaggagttaggagtggtttcacctttctctcgtg 45883589  T
Q  209 gaggtttgacaaaaatggtggact 232  Q
    || |||||||||||||||||||||    
T  45883588 gaagtttgacaaaaatggtggact 45883565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 46539169 - 46539293
Alignment:
Q  111 agtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctgga 210  Q
    ||||||||| |||  |||||||||||||||| |||| |||| |||||||||||||   ||| | |||||||||||| || ||||||||||||||   |||    
T  46539169 agtaggtgacttcagaattccaagattcaaaatttcttttgagcttgaaacttctaatatgcttaaggagctaggaatggttttacctttctctcaagga 46539268  T
Q  211 ggtttgacaaaaatggtggactctc 235  Q
    |||||||||||||||||||||||||    
T  46539269 ggtttgacaaaaatggtggactctc 46539293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 46484123 - 46484343
Alignment:
Q  14 ttcttccaaatgcaaaagatggactatcggctatggttgaaaaggtggcttctgaatttgagttcctagagccaaagcttccttataaacgagtgaaagt 113  Q
    |||||||||||||||||||||| ||  |   | |||||||||||||||||||||||||||| || ||| | |  |||||||||| | |   |||| ||||    
T  46484123 ttcttccaaatgcaaaagatgggcttccaagtttggttgaaaaggtggcttctgaatttgatttactacaacacaagcttccttttgataaagtggaagt 46484222  T
Q  114 aggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggt 213  Q
    |||||| ||    |||||||  |||||  |||||||||| ||||||||||||   ||| | ||||||||||| ||| ||||||||||||||  |||||||    
T  46484223 aggtgactttaggattccaaagttcaatatttcatttggacttgaaacttctgttatgctaaaggagctaggtgtggttttacctttctctggtggaggt 46484322  T
Q  214 ttgacaaaaatggtggactct 234  Q
     ||||||| |||||| |||||    
T  46484323 ctgacaaagatggtgaactct 46484343  T

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Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 46544681 - 46544768
Alignment:
Q  148 tttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctc 235  Q
    |||||||||||||||||| |  || ||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||||    
T  46544681 tttgggcttgaaacttctggcgtgctgaaggagctaggagtggttttacctttctctacaggaggtttgacaaatatggtggactctc 46544768  T

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Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 275
Target Start/End: Complemental strand, 46236746 - 46236580
Alignment:
Q  112 gtaggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggag 211  Q
    |||||||| ||| | ||||||||||||||  |||| |||||  |||||||| ||   | |||||||||| ||||||||||||||||||||||| ||||||    
T  46236746 gtaggtgagttcaagattccaagattcaatatttcgtttggaattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggag 46236647  T
Q  212 gtttgacaaaaatggtgga---ctctcttgaaggtcaagacttttctgtttccaacatatttcacaa 275  Q
    |||| |||||||| |||||    ||| |||| ||| || || | | |||||||||||||||||||||    
T  46236646 gttttacaaaaattgtggattcttcttttgagggtgaaaacctatatgtttccaacatatttcacaa 46236580  T

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Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 46474004 - 46474224
Alignment:
Q  14 ttcttccaaatgcaaaagatggactatcggctatggttgaaaaggtggcttctgaatttgagttcctagagccaaagcttccttataaacgagtgaaagt 113  Q
    |||||||||||||||||||||| ||  |   | |||||||||||||||||||||||| ||| || ||| | |  |||||||||| | |   |||| ||||    
T  46474004 ttcttccaaatgcaaaagatgggcttccaagtttggttgaaaaggtggcttctgaatctgatttactacaacacaagcttccttttgataaagtggaagt 46474103  T
Q  114 aggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcga-atgatgaaggagctaggagtgattttacctttctcttctggagg 212  Q
    |||||| ||    |||||||  |||||  |||||||||| ||||||||||| ||| ||| | ||||||||||| ||| ||||||||||||||  || |||    
T  46474104 aggtgactttaggattccaaagttcaatatttcatttggacttgaaacttc-cgatatgctaaaggagctaggtgtggttttacctttctctggtgaagg 46474202  T
Q  213 tttgacaaaaatggtggactct 234  Q
      ||||||||||||||||||||    
T  46474203 gctgacaaaaatggtggactct 46474224  T

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Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 51944076 - 51944185
Alignment:
Q  125 aaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaat 224  Q
    ||||||| | ||||||  ||||||||| ||||||| || |||| ||| | ||| ||||||||||| |||||||||||||  |||||||||| ||||||||    
T  51944076 aaattccgaaattcaatatttcatttgagcttgaagctactcgtatgctaaagaagctaggagtggttttacctttctcacctggaggttttacaaaaat 51944175  T
Q  225 ggtggactct 234  Q
    ||||||||||    
T  51944176 ggtggactct 51944185  T

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Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 46479865 - 46480130
Alignment:
Q  14 ttcttccaaatgcaaaagatggactatcggctatggttgaaaaggtggcttctgaatttgagttcctagagccaaagcttccttataaacgagtgaaagt 113  Q
    ||||||||||||||||||||||  |  | ||| |||| ||||||||||||||||||| |||| | ||  | |  |||||||| | |     |||| ||||    
T  46479865 ttcttccaaatgcaaaagatgggttggcagctttggtcgaaaaggtggcttctgaatctgagctactgcaacacaagcttccatttggtaaagtggaagt 46479964  T
Q  114 aggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggt 213  Q
    |||||| ||    |||||||  |||||  |||||||||| ||||||||||||   ||| | ||||||||||| ||| ||||||||||||||  |||||||    
T  46479965 aggtgactttaggattccaaagttcaatatttcatttggacttgaaacttctgatatgctaaaggagctaggtgtggttttacctttctctggtggaggt 46480064  T
Q  214 ttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtct 279  Q
     ||||||| |||||| |||||   |   ||||| || ||| ||||||||| |||||||||||||||    
T  46480065 ctgacaaagatggtgaactcttcagttagtcaaaacctttgtgtttccaatatatttcacaagtct 46480130  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 45883785 - 45883729
Alignment:
Q  14 ttcttccaaatgcaaaagatggactatcggctatggttgaaaaggtggcttctgaat 70  Q
    ||||||||||||||||||||||||| || ||| |||| || ||||||||||||||||    
T  45883785 ttcttccaaatgcaaaagatggactgtcagctttggtcgagaaggtggcttctgaat 45883729  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 279
Target Start/End: Original strand, 46498136 - 46498288
Alignment:
Q  127 attccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatgg 226  Q
    |||||||| |||||  |||||||||  ||||||||||||   ||| | |||||||| || ||| |||| |||||| ||  |||||||||||| |||||||    
T  46498136 attccaaggttcaatatttcatttgaacttgaaacttctgatatgttaaaggagcttggcgtggttttgcctttcactaatggaggtttgactaaaatgg 46498235  T
Q  227 tggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtct 279  Q
    || |||||  ||   ||||| || ||| ||||||||| ||||| |||||||||    
T  46498236 tgaactctgctgtgagtcaaaacctttatgtttccaaaatattccacaagtct 46498288  T

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Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 46532155 - 46532215
Alignment:
Q  175 aaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctc 235  Q
    |||||| |||||||  ||||||||||||||  |||||||||||||||||||| ||||||||    
T  46532155 aaggagttaggagttgttttacctttctctggtggaggtttgacaaaaatggcggactctc 46532215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 46554121 - 46554013
Alignment:
Q  127 attccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatgg 226  Q
    |||||||| ||| || |||| |||||| |||||  ||||   ||| |||||||| | |||||||||||||||||||||  ||||||||| |||||||| |    
T  46554121 attccaagtttcgaaatttcttttgggtttgaactttctaatatgctgaaggagttgggagtgattttacctttctctaatggaggtttaacaaaaatag 46554022  T
Q  227 tggactctc 235  Q
    | |||||||    
T  46554021 tagactctc 46554013  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 4613776 - 4613703
Alignment:
Q  127 attccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttaccttt 200  Q
    ||||||||| ||||  |||| |||| ||||||||| ||| | ||| ||||||||||||||||| ||||||||||    
T  4613776 attccaagactcaatatttcttttgagcttgaaacgtctagtatgctgaaggagctaggagtggttttaccttt 4613703  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 47414243 - 47414180
Alignment:
Q  14 ttcttccaaatgcaaaagatggactatcggctatggttgaaaaggtggcttctgaatttgagtt 77  Q
    ||||||||||  ||| ||||||||| || ||| ||||||| |||||||||||||||| ||||||    
T  47414243 ttcttccaaacacaagagatggactgtcagctttggttgagaaggtggcttctgaatctgagtt 47414180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 4581319 - 4581246
Alignment:
Q  127 attccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttaccttt 200  Q
    ||||||||||||||  |||| ||||  |||||||| ||| |  || ||||||||||||||||| ||||||||||    
T  4581319 attccaagattcaatatttcttttgaacttgaaacgtctagtgtgctgaaggagctaggagtggttttaccttt 4581246  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 5160351 - 5160412
Alignment:
Q  16 cttccaaatgcaaaagatggactatcggctatggttgaaaaggtggcttctgaatttgagtt 77  Q
    ||||||||||||||||||||  | ||| || ||||| | |||||||||||||||| ||||||    
T  5160351 cttccaaatgcaaaagatggcttgtcgactttggttaagaaggtggcttctgaatctgagtt 5160412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 45903145 - 45903237
Alignment:
Q  129 tccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaa 221  Q
    ||||| ||||||||||||||||||| |||||  |||||| ||| || | ||||||| ||| | ||||||||||  |  ||| |||||||||||    
T  45903145 tccaaaattcaaattttcatttgggtttgaagtttctcgtatgttgcaagagctagaagtaagtttacctttccatcatgggggtttgacaaa 45903237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 234
Target Start/End: Original strand, 46490900 - 46491004
Alignment:
Q  130 ccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtgg 229  Q
    ||||| |||||  |||||||||| ||||||||||||   ||| |||||||||| || ||| ||||||||||| |   ||||||| | || |||||||||     
T  46490900 ccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctgggcgtggttttacctttcaccaatggaggtcttactaaaatggtga 46490999  T
Q  230 actct 234  Q
    |||||    
T  46491000 actct 46491004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 17736196 - 17736267
Alignment:
Q  208 ggaggtttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtct 279  Q
    |||||||||||||||||||||||||||| |  | |||||||  |||||||| ||| ||||||||| ||||||    
T  17736196 ggaggtttgacaaaaatggtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtct 17736267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 279
Target Start/End: Original strand, 17708516 - 17708613
Alignment:
Q  182 taggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtct 279  Q
    ||||| ||| ||||||||| |||   |||||||||||||||||||||||||||| |  | |||||||  ||| |||||||  ||||||||| ||||||    
T  17708516 taggattgactttacctttttctatgggaggtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtct 17708613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 16722419 - 16722490
Alignment:
Q  208 ggaggtttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtct 279  Q
    |||||||||||||||||||||||||||| |  | |||||||  ||| |||||||  ||||||||| ||||||    
T  16722419 ggaggtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtct 16722490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 17699433 - 17699504
Alignment:
Q  208 ggaggtttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtct 279  Q
    |||||||||||||||||||||||||||| |  | |||||||  ||| |||||||  ||||||||| ||||||    
T  17699433 ggaggtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtct 17699504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 17718340 - 17718393
Alignment:
Q  182 taggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctc 235  Q
    ||||| ||| ||||||||| |||   ||||||||||||||||||||||||||||    
T  17718340 taggattgactttacctttttctatgggaggtttgacaaaaatggtggactctc 17718393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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