View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6930_high_6 (Length: 248)
Name: NF6930_high_6
Description: NF6930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6930_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 37961386 - 37961621
Alignment:
| Q |
1 |
ttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacgttgaattgggtgaca |
100 |
Q |
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| T |
37961386 |
ttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacgttgaattgggtgaca |
37961485 |
T |
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| Q |
101 |
ataaaaccatggtatgtcgaagaaagttaagggtagaatggttggtgatgtaagtgaatttggtggtggtgcaacttgactatgttctatcaccttcatg |
200 |
Q |
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| T |
37961486 |
ataaaaccatggtatgtcgaagaaagttaagggtagaatggttggtgatgtaagtgaatttggtggtggtgcaacttgactatgttctatcaccttcatg |
37961585 |
T |
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| Q |
201 |
gtgaacttggtctcgtgagttatgtttgtgtttgtg |
236 |
Q |
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| T |
37961586 |
gtgaacttggtctcgtgagttatgtttgtgtttgtg |
37961621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 37906678 - 37906481
Alignment:
| Q |
5 |
ggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacgttgaa---ttgggtgacaa |
101 |
Q |
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| T |
37906678 |
ggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatacgtttaacagtgggttgacag |
37906579 |
T |
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| Q |
102 |
taaaaccatggtatgtcgaagaaagttaagggtagaatggttggtgatgtaagtgaatttggtggtggtgcaacttgactatgttctatcaccttcat |
199 |
Q |
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| T |
37906578 |
taaaaccatgaaatgtcgaagaaggtgagagggagtgttgttggtgatggaagtgaatttggtggtggtgcaacttggctatgttctattaccttcat |
37906481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 37914841 - 37914644
Alignment:
| Q |
5 |
ggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacgttgaattggg---tgacaa |
101 |
Q |
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| T |
37914841 |
ggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatgcgtttaagggggggtttgcag |
37914742 |
T |
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| Q |
102 |
taaaaccatggtatgtcgaagaaagttaagggtagaatggttggtgatgtaagtgaatttggtggtggtgcaacttgactatgttctatcaccttcat |
199 |
Q |
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| T |
37914741 |
taaaaccaagaaatgtcaaagaaagtgagagggattctcgttggtgatggaagtgaacttggtggtggtgaaatttgagtctgctctatcaccttcat |
37914644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 3782949 - 3782807
Alignment:
| Q |
3 |
atggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacgttgaattgggtgacaat |
102 |
Q |
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| T |
3782949 |
atggaaagagagtgtttgagaatgggaagtattgtttggagaaagtgatgagttggatgaggaaagtggtagaagaagatgcgtttaatggttcgacagc |
3782850 |
T |
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| Q |
103 |
aaaaccatggtatgtcgaagaaagttaagggtagaatggttgg |
145 |
Q |
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| T |
3782849 |
aaaaccatggaatgtccaagaatgtgaggggaagaatggttgg |
3782807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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