View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6930_high_7 (Length: 206)

Name: NF6930_high_7
Description: NF6930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6930_high_7
NF6930_high_7
[»] chr7 (28 HSPs)
chr7 (85-179)||(46532395-46532490)
chr7 (85-180)||(46524847-46524949)
chr7 (1-77)||(38069067-38069142)
chr7 (1-76)||(16807119-16807193)
chr7 (2-77)||(35693804-35693878)
chr7 (1-82)||(25273990-25274070)
chr7 (1-77)||(30462194-30462269)
chr7 (3-62)||(19817335-19817394)
chr7 (1-62)||(18756629-18756690)
chr7 (1-62)||(28016145-28016206)
chr7 (1-62)||(31496618-31496679)
chr7 (1-62)||(38441843-38441904)
chr7 (1-49)||(9173309-9173357)
chr7 (11-77)||(36819632-36819697)
chr7 (4-58)||(41007932-41007986)
chr7 (1-62)||(37100999-37101060)
chr7 (1-62)||(38850732-38850793)
chr7 (1-62)||(40818670-40818731)
chr7 (1-36)||(26651182-26651217)
chr7 (1-76)||(40231945-40232019)
chr7 (1-39)||(7314318-7314356)
chr7 (4-62)||(32972303-32972361)
chr7 (1-39)||(42493570-42493608)
chr7 (1-51)||(48448559-48448609)
chr7 (1-62)||(47713405-47713466)
chr7 (1-49)||(33376818-33376866)
chr7 (1-33)||(35265794-35265826)
chr7 (1-62)||(46242451-46242514)
[»] chr2 (28 HSPs)
chr2 (2-77)||(31603389-31603463)
chr2 (1-77)||(7724583-7724658)
chr2 (1-77)||(12209005-12209080)
chr2 (1-62)||(44022298-44022359)
chr2 (1-77)||(8373450-8373525)
chr2 (1-76)||(38963812-38963886)
chr2 (1-62)||(8896301-8896362)
chr2 (1-62)||(15177399-15177460)
chr2 (1-62)||(41436862-41436923)
chr2 (1-77)||(5096264-5096339)
chr2 (1-77)||(11277567-11277642)
chr2 (1-62)||(16126054-16126115)
chr2 (1-62)||(43328773-43328834)
chr2 (2-49)||(2831750-2831797)
chr2 (1-76)||(10333550-10333624)
chr2 (1-62)||(6075155-6075216)
chr2 (1-62)||(16333510-16333571)
chr2 (1-62)||(18504502-18504563)
chr2 (4-77)||(41575578-41575650)
chr2 (1-49)||(7470031-7470079)
chr2 (1-77)||(16127752-16127827)
chr2 (4-36)||(20682710-20682742)
chr2 (6-62)||(22718520-22718576)
chr2 (1-77)||(40471752-40471827)
chr2 (4-61)||(6730078-6730135)
chr2 (1-34)||(30776258-30776291)
chr2 (1-77)||(4137426-4137500)
chr2 (1-49)||(45036406-45036454)
[»] chr4 (36 HSPs)
chr4 (1-62)||(37164046-37164107)
chr4 (1-77)||(31152677-31152752)
chr4 (1-77)||(43047403-43047478)
chr4 (3-76)||(8525390-8525462)
chr4 (1-77)||(10384864-10384939)
chr4 (1-77)||(39170974-39171049)
chr4 (1-76)||(43447182-43447256)
chr4 (1-74)||(19533993-19534066)
chr4 (1-62)||(47834116-47834177)
chr4 (1-77)||(3708269-3708344)
chr4 (1-77)||(37667746-37667821)
chr4 (1-77)||(46608229-46608304)
chr4 (1-77)||(48380489-48380564)
chr4 (1-77)||(55631847-55631922)
chr4 (2-77)||(39332803-39332877)
chr4 (4-77)||(6520451-6520523)
chr4 (1-58)||(28914402-28914459)
chr4 (1-62)||(29821080-29821141)
chr4 (1-50)||(53987752-53987801)
chr4 (1-76)||(40411580-40411655)
chr4 (4-62)||(1377533-1377591)
chr4 (1-62)||(1613190-1613251)
chr4 (4-77)||(31657331-31657403)
chr4 (5-50)||(33394119-33394164)
chr4 (4-61)||(39376847-39376904)
chr4 (1-62)||(42185304-42185365)
chr4 (1-49)||(39260395-39260443)
chr4 (4-62)||(23605877-23605935)
chr4 (1-34)||(18881329-18881362)
chr4 (1-50)||(28909812-28909861)
chr4 (1-62)||(39194082-39194143)
chr4 (1-58)||(50684954-50685011)
chr4 (2-34)||(14958170-14958202)
chr4 (6-62)||(48336405-48336461)
chr4 (4-36)||(51306209-51306241)
chr4 (6-62)||(52818662-52818718)
[»] scaffold0221 (1 HSPs)
scaffold0221 (1-77)||(5392-5467)
[»] chr6 (22 HSPs)
chr6 (2-82)||(9022851-9022930)
chr6 (1-77)||(24798523-24798598)
chr6 (1-77)||(32541454-32541529)
chr6 (1-62)||(35117310-35117371)
chr6 (1-77)||(2397786-2397861)
chr6 (1-77)||(2656647-2656722)
chr6 (1-77)||(17496295-17496370)
chr6 (1-76)||(2141585-2141659)
chr6 (1-62)||(24825195-24825256)
chr6 (1-77)||(2667302-2667377)
chr6 (1-76)||(6142484-6142558)
chr6 (1-62)||(29515003-29515064)
chr6 (2-62)||(16969408-16969468)
chr6 (1-49)||(30699304-30699352)
chr6 (1-82)||(995574-995654)
chr6 (1-50)||(4890103-4890152)
chr6 (2-50)||(10109389-10109437)
chr6 (7-77)||(28483054-28483123)
chr6 (7-77)||(29795467-29795536)
chr6 (1-62)||(6188633-6188694)
chr6 (1-62)||(16661579-16661640)
chr6 (1-50)||(31708935-31708984)
[»] chr5 (33 HSPs)
chr5 (1-77)||(1098191-1098266)
chr5 (1-77)||(20022876-20022951)
chr5 (1-76)||(20040388-20040462)
chr5 (4-62)||(40080011-40080069)
chr5 (1-77)||(1781118-1781193)
chr5 (1-77)||(1831367-1831442)
chr5 (1-77)||(19344672-19344747)
chr5 (1-76)||(13548230-13548304)
chr5 (1-82)||(14633018-14633098)
chr5 (1-62)||(30788235-30788296)
chr5 (1-62)||(32473995-32474056)
chr5 (1-77)||(14057724-14057799)
chr5 (1-77)||(30211714-30211789)
chr5 (1-77)||(40316834-40316909)
chr5 (1-77)||(41410632-41410707)
chr5 (1-62)||(28142958-28143019)
chr5 (1-50)||(41263102-41263151)
chr5 (1-77)||(14607530-14607605)
chr5 (1-77)||(31191150-31191225)
chr5 (1-62)||(8627165-8627226)
chr5 (1-62)||(30721658-30721719)
chr5 (2-62)||(967222-967282)
chr5 (1-49)||(33402564-33402612)
chr5 (4-62)||(10465271-10465329)
chr5 (4-62)||(27675570-27675628)
chr5 (4-62)||(41042813-41042871)
chr5 (1-62)||(32110645-32110706)
chr5 (1-62)||(34347497-34347558)
chr5 (1-49)||(20503021-20503069)
chr5 (1-49)||(26802074-26802122)
chr5 (1-49)||(26809624-26809672)
chr5 (1-49)||(26824651-26824699)
chr5 (1-49)||(39104252-39104300)
[»] chr3 (40 HSPs)
chr3 (1-77)||(9484612-9484687)
chr3 (1-77)||(29793346-29793421)
chr3 (1-77)||(42098595-42098670)
chr3 (1-77)||(49076394-49076469)
chr3 (1-77)||(50673693-50673768)
chr3 (1-76)||(29455676-29455750)
chr3 (1-77)||(12948056-12948131)
chr3 (1-77)||(34263672-34263747)
chr3 (1-77)||(48927770-48927845)
chr3 (1-77)||(901056-901131)
chr3 (1-77)||(16434825-16434900)
chr3 (1-77)||(34555167-34555242)
chr3 (1-77)||(34669624-34669699)
chr3 (1-77)||(38833933-38834008)
chr3 (1-77)||(46866359-46866434)
chr3 (1-76)||(38878446-38878520)
chr3 (1-62)||(1325515-1325576)
chr3 (1-62)||(18013438-18013499)
chr3 (1-77)||(36179104-36179179)
chr3 (1-77)||(53274963-53275038)
chr3 (4-62)||(1778391-1778449)
chr3 (4-50)||(4945822-4945868)
chr3 (4-49)||(26759522-26759567)
chr3 (1-50)||(32961288-32961337)
chr3 (1-62)||(43370321-43370382)
chr3 (4-61)||(49818788-49818845)
chr3 (1-62)||(52094062-52094123)
chr3 (2-62)||(2643238-2643298)
chr3 (4-50)||(36364734-36364780)
chr3 (1-51)||(50035111-50035161)
chr3 (1-62)||(23631560-23631621)
chr3 (1-50)||(28958967-28959016)
chr3 (17-58)||(29588407-29588448)
chr3 (1-58)||(33462739-33462796)
chr3 (9-62)||(36665196-36665249)
chr3 (1-62)||(47069436-47069497)
chr3 (1-62)||(53055593-53055654)
chr3 (1-37)||(3648269-3648305)
chr3 (1-49)||(10228697-10228745)
chr3 (1-77)||(29720411-29720486)
[»] chr1 (34 HSPs)
chr1 (1-77)||(10124125-10124200)
chr1 (1-77)||(26543884-26543959)
chr1 (1-77)||(10100490-10100565)
chr1 (1-77)||(45299334-45299409)
chr1 (1-77)||(52749297-52749372)
chr1 (1-77)||(6017426-6017501)
chr1 (1-97)||(31651878-31651973)
chr1 (1-62)||(38786923-38786984)
chr1 (4-77)||(48389082-48389154)
chr1 (3-47)||(3138649-3138693)
chr1 (1-77)||(5945781-5945856)
chr1 (1-77)||(7075307-7075382)
chr1 (4-76)||(41855701-41855772)
chr1 (4-62)||(41414233-41414291)
chr1 (1-62)||(1821605-1821666)
chr1 (4-77)||(44240535-44240607)
chr1 (1-62)||(44452225-44452286)
chr1 (1-77)||(5606368-5606443)
chr1 (1-77)||(8251126-8251201)
chr1 (2-62)||(31932156-31932216)
chr1 (1-49)||(47912324-47912372)
chr1 (1-39)||(2139006-2139044)
chr1 (4-62)||(4489091-4489149)
chr1 (4-62)||(8048728-8048786)
chr1 (1-39)||(23337860-23337898)
chr1 (4-62)||(28490190-28490248)
chr1 (1-39)||(44741396-44741434)
chr1 (4-62)||(50014541-50014599)
chr1 (2-39)||(27990768-27990805)
chr1 (2-35)||(33526140-33526173)
chr1 (2-82)||(23393243-23393322)
chr1 (1-77)||(36035702-36035777)
chr1 (1-49)||(43453142-43453190)
chr1 (1-49)||(49903662-49903710)
[»] chr8 (31 HSPs)
chr8 (1-62)||(27301892-27301953)
chr8 (1-77)||(25691567-25691642)
chr8 (1-77)||(30464448-30464523)
chr8 (1-62)||(21132898-21132959)
chr8 (1-77)||(23437783-23437858)
chr8 (1-77)||(25009160-25009235)
chr8 (2-77)||(761566-761640)
chr8 (1-76)||(38842179-38842254)
chr8 (1-62)||(8496856-8496917)
chr8 (1-62)||(14378656-14378717)
chr8 (1-62)||(20671286-20671347)
chr8 (1-50)||(30653402-30653451)
chr8 (4-77)||(37094148-37094220)
chr8 (1-62)||(40645639-40645700)
chr8 (1-77)||(4327089-4327164)
chr8 (2-82)||(43184750-43184829)
chr8 (4-62)||(4960181-4960239)
chr8 (1-39)||(23547121-23547159)
chr8 (1-42)||(11335396-11335437)
chr8 (1-62)||(17523835-17523896)
chr8 (1-62)||(44887685-44887746)
chr8 (6-62)||(11756806-11756862)
chr8 (1-49)||(29917898-29917946)
chr8 (2-76)||(15870192-15870265)
chr8 (4-62)||(18419028-18419086)
chr8 (9-62)||(886099-886152)
chr8 (2-39)||(1645377-1645414)
chr8 (1-50)||(3466325-3466374)
chr8 (1-82)||(5777524-5777604)
chr8 (1-62)||(29616296-29616357)
chr8 (9-77)||(28583281-28583348)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-77)||(183982-184057)
[»] scaffold0500 (1 HSPs)
scaffold0500 (1-62)||(648-709)
[»] scaffold1248 (1 HSPs)
scaffold1248 (2-49)||(1430-1477)
[»] scaffold0952 (1 HSPs)
scaffold0952 (2-49)||(836-883)
[»] scaffold0281 (1 HSPs)
scaffold0281 (4-77)||(13120-13192)
[»] scaffold0204 (1 HSPs)
scaffold0204 (6-62)||(23927-23983)


Alignment Details
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 46532490 - 46532395
Alignment:
Q  85 tattattaagccacctgtttatgtcggttcatttgtccgttataaagtatcatcaaccgcatcaaaatattg-aaatttcttcatagttgctctga 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46532490 tattattaagccacctgtttatgtcggttcatttgtccgttataaagtatcatcaaccgcatcaaaatattgaaaatttcttcatagttgctctga 46532395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 46524949 - 46524847
Alignment:
Q  85 tattattaagccacctgtttatgtcggttcatttgtccgttataaagtatca-------tcaaccgcatcaaaatattgaaatttcttcatagttgctct 177  Q
    |||||||||||||||| |||||||||| |||||||||| |||||||||||||       ||||| ||||||||||||||||||||||||| |||||||||    
T  46524949 tattattaagccacctatttatgtcggctcatttgtccattataaagtatcatcaagtatcaacagcatcaaaatattgaaatttcttcacagttgctct 46524850  T
Q  178 gag 180  Q
    |||    
T  46524849 gag 46524847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 38069142 - 38069067
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  38069142 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 38069067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 16807119 - 16807193
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttatt 76  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| ||||||||||||||||    
T  16807119 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttatt 16807193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 35693804 - 35693878
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||||| ||| |||||||||| || ||||||| | |||||| |||||||||||||||||    
T  35693804 tttgtatattagtagaaaaatatggtcgaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 35693878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25273990 - 25274070
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattggagga 82  Q
    |||||||||||||||||||| ||| |||||||||||||| || ||||||| | |||||| |||||| |||||||||| ||||    
T  25273990 ctttgtatattagtagaaaattatggtcaaagtaagttaggtcaaaattgcacattttc-aaacagatcatttattgcagga 25274070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 30462194 - 30462269
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||| |||||||| |||||||||||||| || ||||||| | |||||| |||||| ||||||||||    
T  30462194 ctttgtatattagtaaaaaaatatggtcaaagtaagttaagtcaaaattgcacattttc-aaacagatcatttattg 30462269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 19817394 - 19817335
Alignment:
Q  3 ttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||| |||| |||||||||||||||||||||||||| ||||||||| || |||||||||    
T  19817394 ttgtacattaatagaaaaatattgtcaaagtaagttaggttaaaattatacattttcaaa 19817335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 18756690 - 18756629
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||| ||||||||||||||||||| ||||||||||| || || ||||||| |||||||||||    
T  18756690 ctttatatattagtagaaaaatatagtcaaagtaagataggtcaaaattgcatattttcaaa 18756629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28016206 - 28016145
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| ||||||||||||||  | ||||||| | |||||||||    
T  28016206 ctttgtatattagtagaaaaatatggtcaaagtaagttagatcaaaattgcacattttcaaa 28016145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 31496618 - 31496679
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||| ||||||||||  |||||||||||||| || ||||||||| |||||||||    
T  31496618 ctttgtatattaatagaaaaatacggtcaaagtaagttaggtcaaaattgtacattttcaaa 31496679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38441904 - 38441843
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||  | |||||||||    
T  38441904 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtaaaaattacacattttcaaa 38441843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9173309 - 9173357
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||    
T  9173309 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaatt 9173357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 36819697 - 36819632
Alignment:
Q  11 tagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||  ||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  36819697 tagtagaaaaatatgatcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 36819632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 41007932 - 41007986
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatatttt 58  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||  |||||||    
T  41007932 tgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattacatatttt 41007986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 37100999 - 37101060
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||| ||||||||||| |||||||||||||| || ||||||  | |||||||||    
T  37100999 ctttgtatattaatagaaaaatatggtcaaagtaagttaggtcaaaattacacattttcaaa 37101060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38850793 - 38850732
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||| ||||||||| |||||||||||||| || ||||||  | |||||||||    
T  38850793 ctttgtatattagtggaaaaatatggtcaaagtaagttaggtcaaaattacacattttcaaa 38850732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 40818670 - 40818731
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||| |||||||||  | ||||||| | |||||||||    
T  40818670 ctttgtatattagtagaaaaatatggtcagagtaagttagatcaaaattgcacattttcaaa 40818731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26651182 - 26651217
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaag 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  26651182 ctttgtatattagtagaaaaatatggtcaaagtaag 26651217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 40232019 - 40231945
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttatt 76  Q
    |||| ||||||||||||||||||| |||||| ||| ||| || ||||||| | |||||| |||||||| |||||||    
T  40232019 ctttatatattagtagaaaaatatggtcaaaataaattaggtcaaaattgcacattttc-aaacaggttatttatt 40231945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 7314318 - 7314356
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagtta 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  7314318 ctttgtatattagtagaaaaatatggtcaaagtatgtta 7314356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 32972303 - 32972361
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||| ||||||||||| || || ||| ||| | |||||||||    
T  32972303 tgtatattagtagaaaaatatggtcaaagtaagctaggtcaaacttgcaaattttcaaa 32972361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 42493608 - 42493570
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagtta 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  42493608 ctttgtatattagtagaaaaatatggtcaaagtatgtta 42493570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 48448609 - 48448559
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgt 51  Q
    |||||||||||||| ||||||||| || ||||||||||| || ||||||||    
T  48448609 ctttgtatattagtggaaaaatatggttaaagtaagttaggtcaaaattgt 48448559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 47713405 - 47713466
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||| | |||||||  |||||||||||||| || ||||||| | |||||||||    
T  47713405 ctttgtatattagcaaaaaaatacggtcaaagtaagttaggtcaaaattgcacattttcaaa 47713466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33376866 - 33376818
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    |||||||||||| ||||||||||  |||||||||||||| || ||||||    
T  33376866 ctttgtatattaatagaaaaatacggtcaaagtaagttaggtcaaaatt 33376818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35265794 - 35265826
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  35265794 ctttgtatattagtagaaaaatatagtcaaagt 35265826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 46242451 - 46242514
Alignment:
Q  1 ctttgtatattagtagaaaaa--tattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||| |||||  ||| |||||||||||||| || ||||||| | |||||||||    
T  46242451 ctttgtatattagtaaaaaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 46242514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 31603389 - 31603463
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  31603389 tttgtatattagtagaaaaatattgtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 31603463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 7724583 - 7724658
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  7724583 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 7724658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12209080 - 12209005
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  12209080 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 12209005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 44022359 - 44022298
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||| | |||||||||    
T  44022359 ctttgtatattagtagaaaaatatagtcaaagtaagttaggttaaaattgcacattttcaaa 44022298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 8373525 - 8373450
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||| ||||||||||    
T  8373525 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacagatcatttattg 8373450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 38963886 - 38963812
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttatt 76  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||||| |||||    
T  38963886 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcacttatt 38963812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8896362 - 8896301
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||||||    
T  8896362 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 8896301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 15177460 - 15177399
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||| |||||||| ||||||||||||||  ||||||||||| |||||||||    
T  15177460 ctttgtatattagtataaaaatatggtcaaagtaagttaaattaaaattgtacattttcaaa 15177399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41436923 - 41436862
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||||||||||| || |||||| || |||||||||    
T  41436923 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattatacattttcaaa 41436862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 5096339 - 5096264
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||| |||||||||||||||||||  ||||| |||||||||| ||||||||| |||||| |||||||| ||||||||    
T  5096339 ctttatatattagtagaaaaatatgatcaaaataagttatgtcaaaattgtacattttc-aaacaggtaatttattg 5096264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11277642 - 11277567
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||| |||||||||||||||||||  |||||||||||||||| ||||||| | |||||| ||| |||||||||||||    
T  11277642 ctttatatattagtagaaaaatatgatcaaagtaagttatgtcaaaattgcacattttc-aaataggtcatttattg 11277567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 16126054 - 16126115
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||| ||||||||| |||||||||||||| || ||||||| | |||||||||    
T  16126054 ctttgtatattagtggaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 16126115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 43328773 - 43328834
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| ||||||||||||||  | |||||| || |||||||||    
T  43328773 ctttgtatattagtagaaaaatatggtcaaagtaagttagatcaaaattatacattttcaaa 43328834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 2831797 - 2831750
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    ||||||||||||||||||||||| |||||||||||||| || ||||||    
T  2831797 tttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaatt 2831750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 10333550 - 10333624
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttatt 76  Q
    |||||||||||||||||||||||| |||||| ||||||| || ||||||  | |||||| |||||| |||||||||    
T  10333550 ctttgtatattagtagaaaaatatggtcaaaataagttaggtcaaaattacacattttc-aaacagatcatttatt 10333624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6075216 - 6075155
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||| ||||||||||| ||||||||||||||  | ||||||| | |||||||||    
T  6075216 ctttgtatattaatagaaaaatatggtcaaagtaagttaaatcaaaattgaaaattttcaaa 6075155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 16333571 - 16333510
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||| ||| ||||||||| |||||||||||||| || ||||||| | |||||||||    
T  16333571 ctttgtatatcagtggaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 16333510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 18504563 - 18504502
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||| ||||||| || ||||||  | |||||||||    
T  18504563 ctttgtatattagtagaaaaatatggtcaaaataagttacgtcaaaattacacattttcaaa 18504502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 41575650 - 41575578
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||  |||||||||| || || ||||||| | |||||| ||| |||||||||||||    
T  41575650 tgtatattagtagaaaaatatgatcaaagtaagctaggtcaaaattgcaaattttc-aaataggtcatttattg 41575578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7470079 - 7470031
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    |||| ||||||||||||||||||| ||||||||||||||  ||||||||    
T  7470079 ctttatatattagtagaaaaatatggtcaaagtaagttagattaaaatt 7470031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16127752 - 16127827
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||| |||||||||  ||||||||||||| || ||||||  | |||||| ||| |||||||||||||    
T  16127752 ctttgtatattagtggaaaaatatgatcaaagtaagttaggtcaaaattacacattttc-aaataggtcatttattg 16127827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 20682742 - 20682710
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaag 36  Q
    |||||||||||||||||||||||||||||||||    
T  20682742 tgtatattagtagaaaaatattgtcaaagtaag 20682710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 22718520 - 22718576
Alignment:
Q  6 tatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||| ||||||||||| || || ||||||| | |||||||||    
T  22718520 tatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaattttcaaa 22718576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 40471827 - 40471752
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||| ||||||||  ||||| ||||||| || ||||||| | |||||| |||||||| ||||||||    
T  40471827 ctttgtatattagtaaaaaaatatgatcaaaataagttaagtcaaaattgcacattttc-aaacaggttatttattg 40471752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 6730078 - 6730135
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaa 61  Q
    ||||||||||||||||||||| ||||| ||||| || || ||||||| | ||||||||    
T  6730078 tgtatattagtagaaaaatatggtcaatgtaagctaggtcaaaattgcaaattttcaa 6730135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30776291 - 30776258
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagta 34  Q
    ||||||| ||||||||||||||||||||||||||    
T  30776291 ctttgtaaattagtagaaaaatattgtcaaagta 30776258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4137500 - 4137426
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||||||  ||||| ||| |||  | ||||||||| |||||| ||||| |||||||||||    
T  4137500 ctttgtatattagtagaaaaatatgatcaaa-taaattagatcaaaattgtacattttc-aaacatgtcatttattg 4137426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45036454 - 45036406
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    |||||||||||||||||||||||| ||||  |||||||| || ||||||    
T  45036454 ctttgtatattagtagaaaaatatggtcagcgtaagttaagtcaaaatt 45036406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 37164107 - 37164046
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||    
T  37164107 ctttgtatattagtagaaaaatatagtcaaagtaagttaggtcaaaattgtatattttcaaa 37164046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31152752 - 31152677
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  31152752 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 31152677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43047478 - 43047403
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||| | |||||| ||||| |||||||||||    
T  43047478 ctttgtatattagtagaaaaatatggtcaaagtaagttaggttaaaattgcacattttc-aaacaagtcatttattg 43047403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 8525390 - 8525462
Alignment:
Q  3 ttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttatt 76  Q
    ||||||||||||||||||||||  ||||||||||||| || ||||||| |||||||| ||||||||||||||||    
T  8525390 ttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattgcatattttc-aaacaggtcatttatt 8525462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 10384939 - 10384864
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| || ||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  10384939 ctttgtatattagtagaaaaatatggttaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 10384864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 39171049 - 39170974
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||| ||||||| || ||||||| | |||||| |||||||||||||||||    
T  39171049 ctttgtatattagtagaaaaatatggtcaaaataagttaggtcaaaattgcacattttc-aaacaggtcatttattg 39170974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 43447256 - 43447182
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttatt 76  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||| |||||||||    
T  43447256 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacagatcatttatt 43447182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 19533993 - 19534066
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcattta 74  Q
    |||||||||||||||||||||||||||||||||| ||||| | || | || |||||||||||  ||||||||||    
T  19533993 ctttgtatattagtagaaaaatattgtcaaagtatgttatatgaataatgcatattttcaaattaggtcattta 19534066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 47834116 - 47834177
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||  | |||||||||    
T  47834116 ctttgtatattagtagaaaaatatggtcaaagtaagttatgtcaaaattacacattttcaaa 47834177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 3708344 - 3708269
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||||||  ||||||||||||| || ||||||| | |||||| |||||| ||||||||||    
T  3708344 ctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattgcacattttc-aaacagatcatttattg 3708269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 37667746 - 37667821
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||| ||||||||||| |||||||||| ||| || ||||||| | |||||| |||||||||||||||||    
T  37667746 ctttgtatattaatagaaaaatatggtcaaagtaaattaggtcaaaattgcacattttc-aaacaggtcatttattg 37667821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 46608304 - 46608229
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||| |||||||| |||||||||||||| || ||||||  | |||||| |||||||||||||||||    
T  46608304 ctttgtatattagtataaaaatatggtcaaagtaagttaggtcaaaatttcacattttc-aaacaggtcatttattg 46608229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 48380564 - 48380489
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || |||| || | |||||| |||||||||| ||||||    
T  48380564 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaaatgcacattttc-aaacaggtcacttattg 48380489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 55631847 - 55631922
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||| |||||||| |||||| ||||||| || ||||||| | |||||| |||||||||||||||||    
T  55631847 ctttgtatattagtaaaaaaatatggtcaaaataagttaggtcaaaattgcacattttc-aaacaggtcatttattg 55631922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 39332803 - 39332877
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||||| ||||||||||||||  | ||||||| | |||||| |||||| ||||||||||    
T  39332803 tttgtatattagtagaaaaatatggtcaaagtaagttagttcaaaattgcacattttc-aaacagatcatttattg 39332877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 6520523 - 6520451
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||| ||||||||||| || || ||||||| | |||||| ||| |||||||||||||    
T  6520523 tgtatattagtagaaaaatatagtcaaagtaagctaggtcaaaattgcaaattttc-aaataggtcatttattg 6520451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 28914459 - 28914402
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatatttt 58  Q
    |||| ||||||||||||||||||| |||||||||||||| || ||||||||| |||||    
T  28914459 ctttatatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgtaaatttt 28914402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29821141 - 29821080
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| ||||||||||||||  | ||||||| | |||||||||    
T  29821141 ctttgtatattagtagaaaaatatggtcaaagtaagttagatcaaaattgcacattttcaaa 29821080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 53987752 - 53987801
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattg 50  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| ||||    
T  53987752 ctttgtatattagtagaaaaatatggtcaaagtaagttaggttaatattg 53987801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 40411580 - 40411655
Alignment:
Q  1 ctttgtatattagtagaaaaa-tattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttatt 76  Q
    ||||||||||||||| ||||| ||| |||||||||||||| || ||||||| | |||||| ||||||||||||||||    
T  40411580 ctttgtatattagtaaaaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttatt 40411655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 1377591 - 1377533
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||| ||||||||||| || || ||||||| | |||||||||    
T  1377591 tgtatattagtagaaaaatatggtcaaagtaagataggtcaaaattgcaaattttcaaa 1377533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1613190 - 1613251
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||||||| ||| || ||||||  | |||||||||    
T  1613190 ctttgtatattagtagaaaaatatggtcaaagtaaattaggtcaaaattacacattttcaaa 1613251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 31657331 - 31657403
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||| ||||||||||| || || ||||||| | |||||  ||| |||||||||||||    
T  31657331 tgtatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaatttt-taaataggtcatttattg 31657403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 33394164 - 33394119
Alignment:
Q  5 gtatattagtagaaaaatattgtcaaagtaagttatgttaaaattg 50  Q
    |||||||||||||||||||| |||||||||||||| || |||||||    
T  33394164 gtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattg 33394119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 39376847 - 39376904
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaa 61  Q
    ||||||||||||||||||||||||||||||||  || || ||||||| | ||||||||    
T  39376847 tgtatattagtagaaaaatattgtcaaagtaaactaggtcaaaattgcaaattttcaa 39376904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 42185365 - 42185304
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||| ||| ||| || ||||||| | |||||||||    
T  42185365 ctttgtatattagtagaaaaatatggtcaaactaaattaggtcaaaattgcaaattttcaaa 42185304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39260443 - 39260395
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    ||||||||||||||||||||||||||||||| ||| ||| || ||||||    
T  39260443 ctttgtatattagtagaaaaatattgtcaaaataaattaggtcaaaatt 39260395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 23605877 - 23605935
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||| |||||||||||||||  |||||||||| || || ||||||||| |||||||||    
T  23605877 tgtatgttagtagaaaaatatgatcaaagtaagctaggtcaaaattgtaaattttcaaa 23605935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 18881329 - 18881362
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagta 34  Q
    |||||||||||||||||||||||| |||||||||    
T  18881329 ctttgtatattagtagaaaaatatagtcaaagta 18881362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28909812 - 28909861
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattg 50  Q
    |||||||| ||||||||||||||| |||||||||| ||| || |||||||    
T  28909812 ctttgtattttagtagaaaaatatggtcaaagtaatttaagtcaaaattg 28909861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39194082 - 39194143
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||| ||||||||||||||||  ||||||||| |||| || || |||||||||| |||||    
T  39194082 ctttgtgtattagtagaaaaatacagtcaaagtatgttaagtcaatattgtatattgtcaaa 39194143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 50685011 - 50684954
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatatttt 58  Q
    |||| |||||||||||||||||||  |||||||||||||  | ||||||| |||||||    
T  50685011 ctttatatattagtagaaaaatatgatcaaagtaagttagatcaaaattgcatatttt 50684954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 14958170 - 14958202
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagta 34  Q
    ||||||||||||||||||||||| |||||||||    
T  14958170 tttgtatattagtagaaaaatatggtcaaagta 14958202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 48336405 - 48336461
Alignment:
Q  6 tatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||   ||||||||||||| || ||||||| | |||||||||    
T  48336405 tatattagtagaaaaatacgatcaaagtaagttaggtcaaaattgcacattttcaaa 48336461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 51306209 - 51306241
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaag 36  Q
    ||||||||||||||||||||| |||||||||||    
T  51306209 tgtatattagtagaaaaatatggtcaaagtaag 51306241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 52818662 - 52818718
Alignment:
Q  6 tatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||| | |||||||||| ||| |||||||||  | |||||||||    
T  52818662 tatattagtagaaaaatgtggtcaaagtaaattaggttaaaattacacattttcaaa 52818718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 5467 - 5392
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  5467 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 5392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 9022930 - 9022851
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattggagga 82  Q
    ||||||||||||||||||||||| ||||||||| |||| || ||||||| |||||||| ||||||||||||||||| ||||    
T  9022930 tttgtatattagtagaaaaatatggtcaaagtatgttaggtcaaaattgcatattttc-aaacaggtcatttattgcagga 9022851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 24798523 - 24798598
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  24798523 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 24798598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 32541454 - 32541529
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||| ||| || ||||||| |||||||| |||||||||||||||||    
T  32541454 ctttgtatattagtagaaaaatatggtcaaagtaaattaggtcaaaattgcatattttc-aaacaggtcatttattg 32541529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35117371 - 35117310
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||| | |||||||||    
T  35117371 ctttgtatattagtggaaaaatatggtcaaagtaagttatgttaaaattgcacattttcaaa 35117310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2397861 - 2397786
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||| ||| || ||||||| | |||||| |||||||||||||||||    
T  2397861 ctttgtatattagtagaaaaatatggtcaaagtaaattaggtcaaaattgcacattttc-aaacaggtcatttattg 2397786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2656647 - 2656722
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||| ||||||||||    
T  2656647 ctttgtatattagtagaaaaatatagtcaaagtaagttaggtcaaaattgcacattttc-aaacagctcatttattg 2656722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 17496295 - 17496370
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||| ||||||||||    
T  17496295 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacagatcatttattg 17496370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2141659 - 2141585
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttatt 76  Q
    ||||||||||||||||||||||||  ||||||||||||| || ||||||||| |||||| |||||||||| |||||    
T  2141659 ctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattgtacattttc-aaacaggtcacttatt 2141585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 24825256 - 24825195
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||||||    
T  24825256 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 24825195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2667302 - 2667377
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||| ||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||| ||||||||||    
T  2667302 ctttgtttattagtagaaaaatatagtcaaagtaagttaggtcaaaattgcacattttc-aaacagatcatttattg 2667377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 6142484 - 6142558
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttatt 76  Q
    ||||||||||||||||||||||||  ||||||||||||| || ||||||| | |||||| |||||||||| |||||    
T  6142484 ctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcacttatt 6142558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29515003 - 29515064
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||||||  ||||||||||||| || ||||||| | |||||||||    
T  29515003 ctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattgcacattttcaaa 29515064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 16969468 - 16969408
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||||| |||||||||| ||| || ||||||| | |||||||||    
T  16969468 tttgtatattagtagaaaaatatggtcaaagtaaattaagtcaaaattgcacattttcaaa 16969408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30699352 - 30699304
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||    
T  30699352 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaatt 30699304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 995654 - 995574
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattggagga 82  Q
    |||||||||||||||||||||||| |||||||||| ||  || ||||||  | |||||| ||||| ||||||||||| ||||    
T  995654 ctttgtatattagtagaaaaatatagtcaaagtaaatttggtcaaaattacacattttc-aaacatgtcatttattgcagga 995574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4890103 - 4890152
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattg 50  Q
    |||||||||||||||||||||||| |||||||||| ||| || |||||||    
T  4890103 ctttgtatattagtagaaaaatatggtcaaagtaaattaggtcaaaattg 4890152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 10109389 - 10109437
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattg 50  Q
    ||||||||||||||||||||||  |||||||||||||| || |||||||    
T  10109389 tttgtatattagtagaaaaataaagtcaaagtaagttaggtcaaaattg 10109437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 28483123 - 28483054
Alignment:
Q  7 atattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||| || |||||||||||  | ||||||| | |||||| |||||| ||||||||||    
T  28483123 atattagtagaaaaatatggttaaagtaagttagatcaaaattgcacattttc-aaacagatcatttattg 28483054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 29795536 - 29795467
Alignment:
Q  7 atattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||| || |||||||||||  | ||||||| | |||||| |||||| ||||||||||    
T  29795536 atattagtagaaaaatatggttaaagtaagttagatcaaaattgcacattttc-aaacagatcatttattg 29795467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6188633 - 6188694
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||| |||||||||| ||||||||  ||||||||||||| || ||||||| | |||||||||    
T  6188633 ctttatatattagtaaaaaaatatgctcaaagtaagttaggtcaaaattgcacattttcaaa 6188694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 16661579 - 16661640
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||| ||||||||||||||||||  |||||||||||||| || ||||||  | |||||||||    
T  16661579 ctttatatattagtagaaaaatacggtcaaagtaagttaggtcaaaattacacattttcaaa 16661640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31708984 - 31708935
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattg 50  Q
    |||||||||||||||||||||||  |||||||||| ||| || |||||||    
T  31708984 ctttgtatattagtagaaaaatacggtcaaagtaaattaagtcaaaattg 31708935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 1098266 - 1098191
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  1098266 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 1098191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 20022951 - 20022876
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  20022951 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 20022876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 20040388 - 20040462
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttatt 76  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| ||||||||||||||||    
T  20040388 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttatt 20040462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 40080069 - 40080011
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||    
T  40080069 tgtatattagtagaaaaatatggtcaaagtaagttaggttaaaattgtaaattttcaaa 40080011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1781118 - 1781193
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||| ||| || ||||||| | |||||| |||||||||||||||||    
T  1781118 ctttgtatattagtagaaaaatatggtcaaagtaacttaggtcaaaattgcacattttc-aaacaggtcatttattg 1781193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 1831442 - 1831367
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| ||| |||||| |||||| ||||||| | |||||| |||||||||||||||||    
T  1831442 ctttgtatattagtagaaaaatatggtcgaagtaaattatgtcaaaattgcacattttc-aaacaggtcatttattg 1831367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 19344672 - 19344747
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||| ||||||| || ||||||| | |||||| |||||||||||||||||    
T  19344672 ctttgtatattagtagaaaaatatggtcaaaataagttaggtcaaaattgcacattttc-aaacaggtcatttattg 19344747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 13548304 - 13548230
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttatt 76  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||||| |||||    
T  13548304 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcacttatt 13548230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 14633098 - 14633018
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattggagga 82  Q
    ||||||||||| |||||||||||| |||||||||||||| || ||||||| | |||||| |||||| |||||||||| ||||    
T  14633098 ctttgtatatttgtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacagatcatttattgcagga 14633018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 30788296 - 30788235
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||  | |||||||||    
T  30788296 ctttgtatattagtagaaaaatatggtcaaagtaagttatgtcaaaattacacattttcaaa 30788235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 32473995 - 32474056
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||  | |||||||||    
T  32473995 ctttgtatattagtagaaaaatatggtcaaaataagttatgttaaaattacacattttcaaa 32474056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 14057799 - 14057724
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||| |||||||||||  ||||||||||||| || ||||||| |||||||| |||||| ||||||||||    
T  14057799 ctttgtatattaatagaaaaatatgatcaaagtaagttaggtcaaaattgcatattttc-aaacagatcatttattg 14057724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 30211714 - 30211789
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| ||||||||||||||  | ||||||| | |||||  |||||||||||||||||    
T  30211714 ctttgtatattagtagaaaaatatggtcaaagtaagttagatcaaaattgcacatttt-taaacaggtcatttattg 30211789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 40316909 - 40316834
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| ||| |||||| ||| || ||||||| | |||||| |||||||||||||||||    
T  40316909 ctttgtatattagtagaaaaatatggtcgaagtaaattaggtcaaaattgcacattttc-aaacaggtcatttattg 40316834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 41410632 - 41410707
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| ||| |||||| ||| || ||||||| | |||||| |||||||||||||||||    
T  41410632 ctttgtatattagtagaaaaatatggtcgaagtaaattaggtcaaaattgcacattttc-aaacaggtcatttattg 41410707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28143019 - 28142958
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||||||| |||  ||||||||| | |||||||||    
T  28143019 ctttgtatattagtagaaaaatatggtcaaagtaaattagattaaaattgcacattttcaaa 28142958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 41263102 - 41263151
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattg 50  Q
    |||||||||||||||||||||||| |||||||||||||| || |||||||    
T  41263102 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattg 41263151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 14607530 - 14607605
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||| ||| ||| || ||||||| | |||||| ||||| |||||||||||    
T  14607530 ctttgtatattagtagaaaaatatggtcaaattaaattaggtcaaaattgcacattttc-aaacatgtcatttattg 14607605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 31191150 - 31191225
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||| ||||||||||| |||||||||| ||| || ||||||| | |||||| ||||| |||||||||||    
T  31191150 ctttgtatattaatagaaaaatatggtcaaagtaaattaggtcaaaattgcacattttc-aaacatgtcatttattg 31191225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8627226 - 8627165
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||| |||||||| ||||||||||||||  | ||||||| | |||||||||    
T  8627226 ctttgtatattagtaaaaaaatatggtcaaagtaagttagatcaaaattgcacattttcaaa 8627165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30721658 - 30721719
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||| ||||||||||| |||||| ||||||| || ||||||| | |||||||||    
T  30721658 ctttgtatattaatagaaaaatatggtcaaaataagttaggtcaaaattgcacattttcaaa 30721719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 967282 - 967222
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||| ||||||||||| || ||||||||||| || ||||||| | |||||||||    
T  967282 tttgtatattaatagaaaaatatagttaaagtaagttaggtcaaaattgcaaattttcaaa 967222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33402564 - 33402612
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    ||||||||||||||||||||||||  ||||||||||||| || ||||||    
T  33402564 ctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaatt 33402612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 10465271 - 10465329
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||| |||||||||| ||||||||||| || || |||||| || |||||||||    
T  10465271 tgtatattagcagaaaaatatggtcaaagtaagataggtcaaaattataaattttcaaa 10465329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 27675628 - 27675570
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||  |||||||||| || || ||||||| | |||||||||    
T  27675628 tgtatattagtagaaaaatatgatcaaagtaagctaggtcaaaattgcaaattttcaaa 27675570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 41042813 - 41042871
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||| ||||||||||| ||  | ||||||| | |||||||||    
T  41042813 tgtatattagtagaaaaatatggtcaaagtaagctagatcaaaattgcaaattttcaaa 41042871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 32110645 - 32110706
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||  |||||||||| |||  | ||||||| | |||||||||    
T  32110645 ctttgtatattagtagaaaaatacggtcaaagtaaattagatcaaaattgcacattttcaaa 32110706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 34347558 - 34347497
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||  || |||||||| ||||||||||||||||| ||||||  | |||||||||    
T  34347558 ctttgtatatttttaaaaaaatatggtcaaagtaagttatgtcaaaattacacattttcaaa 34347497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20503021 - 20503069
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    ||||||||||| |||||||||||| ||| |||||||||| || ||||||    
T  20503021 ctttgtatattggtagaaaaatatggtctaagtaagttaggtcaaaatt 20503069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26802074 - 26802122
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    |||||||||||||| ||||||||| |||||||| | ||| |||||||||    
T  26802074 ctttgtatattagttgaaaaatatggtcaaagtcatttaggttaaaatt 26802122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26809624 - 26809672
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    |||||||||||||| ||||||||| |||||||| | ||| |||||||||    
T  26809624 ctttgtatattagttgaaaaatatggtcaaagtcatttaggttaaaatt 26809672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26824651 - 26824699
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    |||||||||||||| ||||||||| |||||||| | ||| |||||||||    
T  26824651 ctttgtatattagttgaaaaatatggtcaaagtcatttaggttaaaatt 26824699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39104252 - 39104300
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    |||||||||||||||||||||||| |||||| ||| |||| | ||||||    
T  39104252 ctttgtatattagtagaaaaatatggtcaaattaaattatatcaaaatt 39104300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9484687 - 9484612
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  9484687 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 9484612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 29793346 - 29793421
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  29793346 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 29793421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42098595 - 42098670
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  42098595 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 42098670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 49076394 - 49076469
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  49076394 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 49076469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 50673768 - 50673693
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  50673768 ctttgtatattagtagaaaaatatggtcaaagtaagttaagtcaaaattgcacattttc-aaacaggtcatttattg 50673693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 29455676 - 29455750
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttatt 76  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| ||||||||||||||||    
T  29455676 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttatt 29455750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12948131 - 12948056
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| ||||| |||||||||||    
T  12948131 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacatgtcatttattg 12948056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 34263672 - 34263747
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||  |||||||||||||||||    
T  34263672 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacatttt-taaacaggtcatttattg 34263747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 48927770 - 48927845
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||| ||||||||||    
T  48927770 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtaaaaattgcacattttc-aaacagatcatttattg 48927845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 901056 - 901131
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||||||  ||||||||||||| || ||||||| | |||||| |||||| ||||||||||    
T  901056 ctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattgcacattttc-aaacagatcatttattg 901131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16434825 - 16434900
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||| |||||||| |||||| ||||||| || ||||||| | |||||| |||||||||||||||||    
T  16434825 ctttgtatattagtaaaaaaatatggtcaaaataagttaggtcaaaattgcacattttc-aaacaggtcatttattg 16434900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 34555242 - 34555167
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || |||| || | |||||| |||||||||| ||||||    
T  34555242 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaaatgcacattttc-aaacaggtcacttattg 34555167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 34669699 - 34669624
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||||||  ||||||||||||| || ||||||| | |||||| ||||| |||||||||||    
T  34669699 ctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattgcacattttc-aaacatgtcatttattg 34669624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 38833933 - 38834008
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||  | |||||  |||||||||||||||||    
T  38833933 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattacacatttt-taaacaggtcatttattg 38834008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 46866434 - 46866359
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||||| |||| ||||||| || ||||||| | |||||| ||||| |||||||||||    
T  46866434 ctttgtatattagtagaaaaatattgccaaaataagttaggtcaaaattgcacattttc-aaacatgtcatttattg 46866359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 38878446 - 38878520
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttatt 76  Q
    |||| ||||||||||||||||||| |||||| ||| |||||| ||||||| | |||||| ||||||||||||||||    
T  38878446 ctttttatattagtagaaaaatatggtcaaaataatttatgtcaaaattgcacattttc-aaacaggtcatttatt 38878520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1325515 - 1325576
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||| |||||||||||||||||||  ||||||||||||| |||||||||| | |||||||||    
T  1325515 ctttatatattagtagaaaaatataatcaaagtaagttaggttaaaattgcaaattttcaaa 1325576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 18013438 - 18013499
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||||||  ||||||||| |||||| ||||||| | |||||||||    
T  18013438 ctttgtatattagtagaaaaatatgatcaaagtaaattatgtcaaaattgcacattttcaaa 18013499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36179104 - 36179179
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||||||  ||||||||| ||| || ||||||| | |||||| |||||||| ||||||||    
T  36179104 ctttgtatattagtagaaaaatatgatcaaagtaaattaagtcaaaattgcacattttc-aaacaggttatttattg 36179179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 53274963 - 53275038
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||||||  ||||| ||||||| || ||||||| | |||||| ||| |||||||||||||    
T  53274963 ctttgtatattagtagaaaaatatgatcaaaataagttaggtcaaaattgcacattttc-aaataggtcatttattg 53275038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 1778449 - 1778391
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||| ||||||||||| || || ||||||| | |||||||||    
T  1778449 tgtatattagtagaaaaatatggtcaaagtaagctaagtcaaaattgcaaattttcaaa 1778391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 4945822 - 4945868
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattg 50  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||    
T  4945822 tgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattg 4945868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 26759567 - 26759522
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||    
T  26759567 tgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaatt 26759522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32961337 - 32961288
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattg 50  Q
    |||||||||||||||||||||||| |||||| ||||||| || |||||||    
T  32961337 ctttgtatattagtagaaaaatatggtcaaactaagttaggtcaaaattg 32961288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 43370382 - 43370321
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||| |||||||   |||||||||||||||| ||||||| | |||||||||    
T  43370382 ctttgtatattagtataaaaatacgatcaaagtaagttatgtcaaaattgcacattttcaaa 43370321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 49818845 - 49818788
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaa 61  Q
    ||||||||||||||||||||| |||||||||| ||| || ||||||| | ||||||||    
T  49818845 tgtatattagtagaaaaatatggtcaaagtaaattaggtcaaaattgcaaattttcaa 49818788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 52094062 - 52094123
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||| |||||||  | ||||||| | |||||||||    
T  52094062 ctttgtatattagtagaaaaatatggtcaaattaagttagatcaaaattgcaaattttcaaa 52094123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 2643238 - 2643298
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||||| ||||||||||  || || ||||||| | |||||||||    
T  2643238 tttgtatattagtagaaaaatatggtcaaagtaaactaggtcaaaattgcaaattttcaaa 2643298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 36364734 - 36364780
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattg 50  Q
    ||||||||||||||||||||| |||||| ||||||| || |||||||    
T  36364734 tgtatattagtagaaaaatatggtcaaaataagttaggtcaaaattg 36364780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 50035161 - 50035111
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgt 51  Q
    ||||||||||||||| ||||| || |||||||||||||| || ||||||||    
T  50035161 ctttgtatattagtataaaaacatggtcaaagtaagttaggtcaaaattgt 50035111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23631560 - 23631621
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||  ||||||||| |||| ||||| | |  |||||||||||    
T  23631560 ctttgtatattagtagaaaaatacggtcaaagtatgttaggttaataatacatattttcaaa 23631621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28958967 - 28959016
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattg 50  Q
    |||| ||||||||||||||||||| ||||||||||| || || |||||||    
T  28958967 ctttatatattagtagaaaaatatggtcaaagtaagctaggtcaaaattg 28959016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 29588448 - 29588407
Alignment:
Q  17 aaaaatattgtcaaagtaagttatgttaaaattgtatatttt 58  Q
    |||||||| |||||||||||||| || |||||||||||||||    
T  29588448 aaaaatatggtcaaagtaagttaggtcaaaattgtatatttt 29588407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 33462796 - 33462739
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatatttt 58  Q
    |||||||||||||||||||| ||| || |||||||||||  | ||||||||| |||||    
T  33462796 ctttgtatattagtagaaaagtatagttaaagtaagttagatcaaaattgtacatttt 33462739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 36665196 - 36665249
Alignment:
Q  9 attagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||| ||||||||| |||| ||||| | |||||||| |||||    
T  36665196 attagtagaaaaatatagtcaaagtatgttaagttaataatgtatattgtcaaa 36665249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 47069497 - 47069436
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||| ||||||||||||  ||||||||| |||| || ||||||| | |||||||||    
T  47069497 ctttgtatatcagtagaaaaatacagtcaaagtaggttaggtcaaaattgaaaattttcaaa 47069436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 53055593 - 53055654
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||| | ||||| || ||||||  | |||||||||    
T  53055593 ctttgtatattagtagaaaaatatggtcaaaattagttaggtcaaaattacacattttcaaa 53055654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3648269 - 3648305
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagt 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  3648269 ctttgtatattagtataaaaatatggtcaaagtaagt 3648305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10228697 - 10228745
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    |||||||||||||| ||||||||| |||||||| | ||| |||||||||    
T  10228697 ctttgtatattagttgaaaaatatggtcaaagtcatttaggttaaaatt 10228745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 29720486 - 29720411
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||| ||||||||| ||||||||   ||||||||||||| || ||||||| | |||||| |||||| ||||||||||    
T  29720486 ctttatatattagtggaaaaataggatcaaagtaagttaggtcaaaattgcacattttc-aaacagatcatttattg 29720411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 10124200 - 10124125
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  10124200 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 10124125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 26543959 - 26543884
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||| |||||| ||||||||||    
T  26543959 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgtacattttc-aaacagatcatttattg 26543884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10100490 - 10100565
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| ||||| |||||||||||    
T  10100490 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacatgtcatttattg 10100565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 45299409 - 45299334
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||| |||||||| |||||||||||||| || ||||||| | |||||| |||||||||||||||||    
T  45299409 ctttgtatattagtataaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggtcatttattg 45299334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 52749372 - 52749297
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||| ||||||| || ||||||| | |||||| |||||||||||||||||    
T  52749372 ctttgtatattagtagaaaaatatggtcaaaataagttaggtaaaaattgcacattttc-aaacaggtcatttattg 52749297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6017426 - 6017501
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| ||||||||||||||  | ||||||| | |||||| |||||| ||||||||||    
T  6017426 ctttgtatattagtagaaaaatatggtcaaagtaagttagatcaaaattgcacattttc-aaacagatcatttattg 6017501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 31651878 - 31651973
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattggaggaagtattattaagcca 97  Q
    |||||||||||||||||||||||| |||||| ||||  | |||||||||| | |||||| ||| |||||||||||||  ||| ||| ||||||||||    
T  31651878 ctttgtatattagtagaaaaatatggtcaaattaagccaggttaaaattgcacattttc-aaataggtcatttattgcgggacgtaatattaagcca 31651973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38786923 - 38786984
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||| |||||||||  |||||||||||||| | ||||||| |||||||||||    
T  38786923 ctttgtatattagttgaaaaatatgatcaaagtaagttatatcaaaattgcatattttcaaa 38786984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 48389154 - 48389082
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||| ||||||||||| || || ||||||| | |||||| ||| |||||||||||||    
T  48389154 tgtatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaattttc-aaataggtcatttattg 48389082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 3138693 - 3138649
Alignment:
Q  3 ttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaa 47  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||    
T  3138693 ttgtatattagtagaaaaatatggtcaaagtaagttatgtcaaaa 3138649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 5945856 - 5945781
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| || ||| ||| |||||| ||||||| | |||||| ||||| |||||||||||    
T  5945856 ctttgtatattagtagaaaaatatggttaaaataaattatgtcaaaattgcacattttc-aaacatgtcatttattg 5945781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 7075307 - 7075382
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| ||||||||||||||  | ||||||| |  ||||| ||||| |||||||||||    
T  7075307 ctttgtatattagtagaaaaatatggtcaaagtaagttagatcaaaattgcacgttttc-aaacaagtcatttattg 7075382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 41855701 - 41855772
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttatt 76  Q
    ||||||||||||||||||||| ||||||||||| || || ||||||| | |||||| ||| ||||||||||||    
T  41855701 tgtatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaattttc-aaataggtcatttatt 41855772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 41414291 - 41414233
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||| ||||||||||| || || ||||||| | |||||||||    
T  41414291 tgtatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaattttcaaa 41414233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1821605 - 1821666
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||| | ||||||||| |||||||||||||| || ||||||| | |||||||||    
T  1821605 ctttgtatattaatggaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 1821666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 44240607 - 44240535
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||| ||||||||||| || || ||||||| | |||||  ||| |||||||||||||    
T  44240607 tgtatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaatttt-taaataggtcatttattg 44240535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 44452286 - 44452225
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||| ||||||||||||||| |||||||||||||| || ||||||  | |||||||||    
T  44452286 ctttgtatgttagtagaaaaatatggtcaaagtaagttaggtcaaaattacacattttcaaa 44452225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5606368 - 5606443
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| || |||||||||||  | ||||||| |  ||||| ||| |||||||||||||    
T  5606368 ctttgtatattagtagaaaaatatggttaaagtaagttagatcaaaattgcactttttc-aaataggtcatttattg 5606443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 8251126 - 8251201
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||| ||  ||||||| ||||||||||||||  | ||||||| | |||||| |||||||||||||||||    
T  8251126 ctttgtatattattaagaaaatatggtcaaagtaagttagatcaaaattgcacattttc-aaacaggtcatttattg 8251201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 31932156 - 31932216
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||||| ||||||||||  || || ||||||| | |||||||||    
T  31932156 tttgtatattagtagaaaaatatggtcaaagtaaactaggtcaaaattgcaaattttcaaa 31932216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 47912372 - 47912324
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    |||||||||||||||||||||||| |||||| ||| |||||| ||||||    
T  47912372 ctttgtatattagtagaaaaatatggtcaaaataaattatgtcaaaatt 47912324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 2139006 - 2139044
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagtta 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  2139006 ctttgtatattagtagaaaaatatgatcaaagtaagtta 2139044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 4489149 - 4489091
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||| ||||| ||||| ||  ||||||||| | |||||||||    
T  4489149 tgtatattagtagaaaaatatggtcaacgtaagctagattaaaattgcaaattttcaaa 4489091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 8048728 - 8048786
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||| |||||| |||| || || ||||||| | |||||||||    
T  8048728 tgtatattagtagaaaaatatggtcaaaataagctaggtcaaaattgcaaattttcaaa 8048786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23337898 - 23337860
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagtta 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  23337898 ctttgtatattagtagaaaaatatggtcaaactaagtta 23337860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 28490248 - 28490190
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||| ||||||||||| ||||||||||  ||||| ||||||| | |||||||||    
T  28490248 tgtatattattagaaaaatatggtcaaagtaaactatgtcaaaattgcaaattttcaaa 28490190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 44741434 - 44741396
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagtta 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  44741434 ctttgtatattagtagaaaaatatggtcaaaataagtta 44741396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 50014541 - 50014599
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||| ||||||||||| ||  | ||||||| | |||||||||    
T  50014541 tgtatattagtagaaaaatatggtcaaagtaagctagatcaaaattgcaaattttcaaa 50014599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 27990805 - 27990768
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagtta 39  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  27990805 tttgtatattagtagaaaaatatggtcaaagtatgtta 27990768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 33526140 - 33526173
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaa 35  Q
    ||||||||||||||||||||||| ||||||||||    
T  33526140 tttgtatattagtagaaaaatatagtcaaagtaa 33526173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 23393322 - 23393243
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattggagga 82  Q
    |||||||||||||| |||||||| ||||||||||  ||  ||||||||| | |||||  ||| ||||||||||||| ||||    
T  23393322 tttgtatattagtataaaaatatggtcaaagtaaactagtttaaaattgcaaatttt-taaataggtcatttattgcagga 23393243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 36035777 - 36035702
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||||||  ||||||||| |||  | ||||||  | |||||  |||||||||||||||||    
T  36035777 ctttgtatattagtagaaaaatatgatcaaagtaaattagatcaaaattacacatttt-taaacaggtcatttattg 36035702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43453142 - 43453190
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    |||||||||||| ||||||||||| |||||| ||||||| || ||||||    
T  43453142 ctttgtatattaatagaaaaatatggtcaaaataagttaggtcaaaatt 43453190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 49903662 - 49903710
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    ||||||||||||||||||||||||  ||||||||| ||| || ||||||    
T  49903662 ctttgtatattagtagaaaaatatgatcaaagtaaattaggtcaaaatt 49903710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 27301953 - 27301892
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||||||||||||||||| |||| | ||||||| |||||||||||    
T  27301953 ctttgtatattagtagaaaaatattgtcaaagtaaattatatcaaaattgaatattttcaaa 27301892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25691567 - 25691642
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| ||||| |||||||||||    
T  25691567 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacatgtcatttattg 25691642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 30464523 - 30464448
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| ||||| |||||||||||    
T  30464523 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacatgtcatttattg 30464448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 21132898 - 21132959
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||||||    
T  21132898 ctttgtatattagtagaaaaatatggtcaaagtaagttaagtcaaaattgcacattttcaaa 21132959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23437783 - 23437858
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| ||||||| || ||| || ||||||| | |||||| |||||||||||||||||    
T  23437783 ctttgtatattagtagaaaaatatggtcaaagcaaattaggtcaaaattgcacattttc-aaacaggtcatttattg 23437858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 25009235 - 25009160
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||| ||| || ||||||| | |||||| |||||| ||||||||||    
T  25009235 ctttgtatattagtagaaaaatatggtcaaagtaaattaggtcaaaattgcacattttc-aaacagatcatttattg 25009160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 761640 - 761566
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||||| |||||||||| ||| || ||||||  | |||||| |||||||||||||||||    
T  761640 tttgtatattagtagaaaaatatggtcaaagtaaattaggtcaaaattacacattttc-aaacaggtcatttattg 761566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 38842254 - 38842179
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttatt 76  Q
    ||||||||||||||||||||||||  ||||||||||||| || ||||||  | |||||  ||||||||||||||||    
T  38842254 ctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattacacatttttcaaacaggtcatttatt 38842179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8496856 - 8496917
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||| |||||||||||| |||||||||||||| || ||||||| | |||||||||    
T  8496856 ctttgtatattcgtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttcaaa 8496917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 14378656 - 14378717
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||| ||||||||||||||||||| |||||||||||||| || ||||||| | |||||||||    
T  14378656 ctttatatattagtagaaaaatatagtcaaagtaagttaggtcaaaattgcacattttcaaa 14378717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 20671347 - 20671286
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||  | |||||||||    
T  20671347 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattacacattttcaaa 20671286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30653451 - 30653402
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattg 50  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  30653451 ctttgtatattagtagaaaaatatggtcaaagtaagttagattaaaattg 30653402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 37094220 - 37094148
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||| ||||||||||| || || ||||||| | |||||| ||| |||||||||||||    
T  37094220 tgtatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaattttc-aaataggtcatttattg 37094148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40645700 - 40645639
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||||||  ||||||||||||| || ||||||| | |||||||||    
T  40645700 ctttgtatattagtagaaaaatatgatcaaagtaagttaggtcaaaattgaaaattttcaaa 40645639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 4327089 - 4327164
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||||||  |||||||||||||  | ||||||| | |||||| ||||| |||||||||||    
T  4327089 ctttgtatattagtagaaaaatatgatcaaagtaagttagatcaaaattgcacattttc-aaacaagtcatttattg 4327164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 43184750 - 43184829
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattggagga 82  Q
    ||||||||||||||||||||||| |||||||||||||| || |||||   | |||||  ||||||||||||||||| ||||    
T  43184750 tttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaataacacatttt-taaacaggtcatttattgcagga 43184829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 4960239 - 4960181
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||| ||||||||||| || || ||||||| | |||||||||    
T  4960239 tgtatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaattttcaaa 4960181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23547159 - 23547121
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagtta 39  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  23547159 ctttgtatattagtagaaaaatattatcaaagtaagtta 23547121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11335396 - 11335437
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgt 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  11335396 ctttgtatattagtagaaaaatatggtcaaagtatgttatgt 11335437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17523896 - 17523835
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||| ||||||||||  ||||||||||||| ||||||| || | |||||||||    
T  17523896 ctttgtatattagcagaaaaatatgatcaaagtaagttaggttaaaactgcacattttcaaa 17523835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 44887685 - 44887746
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||| ||||| | || ||||||| | |||||||||    
T  44887685 ctttgtatattagtagaaaaatatggtcaaactaagtcaggtcaaaattgcacattttcaaa 44887746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 11756862 - 11756806
Alignment:
Q  6 tatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||| ||||||||| |||||||||||||| || ||||||| | |||||||||    
T  11756862 tatattagttgaaaaatatggtcaaagtaagttaggtcaaaattgcaaattttcaaa 11756806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29917898 - 29917946
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    |||||||||||||||||||||||| |||||| ||||||| || ||||||    
T  29917898 ctttgtatattagtagaaaaatatggtcaaaataagttaggtcaaaatt 29917946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 15870265 - 15870192
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttatt 76  Q
    |||||||||||||||||||||||  ||||||||| |||  | ||||||||  |||||| |||||||| |||||||    
T  15870265 tttgtatattagtagaaaaatatgatcaaagtaaattagatcaaaattgttcattttc-aaacaggttatttatt 15870192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 18419086 - 18419028
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||||| ||||||||||| || || ||||||  | |||||||||    
T  18419086 tgtatattagtagaaaaatatggtcaaagtaagctaggtcaaaattacaaattttcaaa 18419028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 886152 - 886099
Alignment:
Q  9 attagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||| ||||||||| |||| ||||| | |||||||| |||||    
T  886152 attagtagaaaaatatggtcaaagtatgttaagttaataatgtatattgtcaaa 886099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 1645377 - 1645414
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagtta 39  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  1645377 tttgtatattagtagaaaaatacggtcaaagtaagtta 1645414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 3466374 - 3466325
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattg 50  Q
    |||||||||||||||||||||||   ||||||||||||| || |||||||    
T  3466374 ctttgtatattagtagaaaaataaaatcaaagtaagttaggtcaaaattg 3466325  T

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Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 5777524 - 5777604
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattggagga 82  Q
    |||||||||||||||||||||||| || ||| |||| ||  | ||||||  | |||||| ||||||||||||||||| ||||    
T  5777524 ctttgtatattagtagaaaaatatggttaaaataagatagatcaaaattacacattttc-aaacaggtcatttattgcagga 5777604  T

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Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29616296 - 29616357
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||| ||||||  |||||||||||||  | ||||||  |||||||||||    
T  29616296 ctttgtatattagtagacaaatatgatcaaagtaagttagatcaaaatttaatattttcaaa 29616357  T

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Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 28583281 - 28583348
Alignment:
Q  9 attagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||  ||||||||| ||| || ||||||| | |||||||||| ||||||| |||||    
T  28583281 attagtagaaaaatatgctcaaagtaaattaggtcaaaattgcacattttcaaaa-aggtcatctattg 28583348  T

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Target: scaffold0001 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 184057 - 183982
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||||| ||||||||    
T  184057 ctttgtatattagtagaaaaatatggtcaaagtaagttaggtcaaaattgcacattttc-aaacaggttatttattg 183982  T

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Target: scaffold0500 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 648 - 709
Alignment:
Q  1 ctttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    |||||||||||||||||||||||| |||||| ||||||| || ||||||| |||||||||||    
T  648 ctttgtatattagtagaaaaatatggtcaaactaagttaggtcaaaattgcatattttcaaa 709  T

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Target: scaffold1248 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 1430 - 1477
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  1430 tttgtatattagtagaaaaatatggtcaaagtaagttatgtcaaaatt 1477  T

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Target: scaffold0952 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 883 - 836
Alignment:
Q  2 tttgtatattagtagaaaaatattgtcaaagtaagttatgttaaaatt 49  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  883 tttgtatattagtagaaaaatatggtcaaagtaagttatgtcaaaatt 836  T

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Target: scaffold0281 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 13192 - 13120
Alignment:
Q  4 tgtatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaaacaggtcatttattg 77  Q
    ||||||||||||||||||||| ||||||||||| || || ||||||| | |||||  |||||||||||||||||    
T  13192 tgtatattagtagaaaaatatggtcaaagtaagctaggtcaaaattgcaaatttt-taaacaggtcatttattg 13120  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 23927 - 23983
Alignment:
Q  6 tatattagtagaaaaatattgtcaaagtaagttatgttaaaattgtatattttcaaa 62  Q
    ||||||||||||||||||   ||||||||||||| || ||||||| | |||||||||    
T  23927 tatattagtagaaaaatacgatcaaagtaagttaggtcaaaattgcacattttcaaa 23983  T

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