View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6930_low_2 (Length: 591)
Name: NF6930_low_2
Description: NF6930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6930_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 16 - 583
Target Start/End: Complemental strand, 5112521 - 5111954
Alignment:
| Q |
16 |
caacaactacaaaaaccagcttctagcaccaacaatgtcatcaatgtgatcgcgccgcaaccgattcgaccaattggttcatgcataaatgttggttgca |
115 |
Q |
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| T |
5112521 |
caacaactacaaaaaccagcttctagcaccaacaatgtcatcaatgtgatctcgccgcaaccgattcgaccaattggttcatgcataaatgttggttgca |
5112422 |
T |
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| Q |
116 |
taagtgaagtttcagctataccatgtgtaacaaaaacaccnnnnnnncctgaggaattagaacaagaggttgagtcagaggaattgccagctgtcatttc |
215 |
Q |
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| T |
5112421 |
taagtgaagtttcagctataccatgtgtaacaaaaacacctaaaaaacctgaggaattagaacaagaggttgagtcagaggaattgccagctgtcatttc |
5112322 |
T |
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| Q |
216 |
agattcaaacaacagagttaggatggcaaattcagcttacaaagaaatggtgggtcaaccagaatgtccttggcttgaaattcaatgtggttcatcatgc |
315 |
Q |
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| T |
5112321 |
agattcaaacaacagagttaggatggcaaattcagcttacaaagaaatggtgggtcaaccagaatgtccttggcttgaaattcaatgtggttcatcatgc |
5112222 |
T |
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| Q |
316 |
aagaggattagtggtgaggtaacattgcaactttctgattcttcaaatataccaatttcttcaaatggattttcttgttgggtgaggattgaatgggaaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
5112221 |
aagaggattagtggtgaggtaacattgcaactttctgattcttcaaatataccaatttcttcaaatggtttctcttgttgggtgaggattgaatgggaaa |
5112122 |
T |
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| Q |
416 |
ataatggacagaagaaaaattgtgtgaatgctttttgtgatgttatcaagttgtgttgtgatcaatcaagggactatgttttcacttggaggtttcatac |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5112121 |
ataatggacagaagaaaaattgtgtgaatgctttttgtgatgttgtcaagttgtgttgtgatcaatcaagggactatgttttcacttggaggtttcatac |
5112022 |
T |
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| Q |
516 |
tcgttctagggaagcttctcaatccagttgcaatgcttgaaaattgaaacttgcacatagttcttctc |
583 |
Q |
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| T |
5112021 |
tcgttctagggaagcttctcaatccagttgcaatgcttgaaaattgaaacttgcacatagttcttctc |
5111954 |
T |
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