View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6931_high_10 (Length: 236)

Name: NF6931_high_10
Description: NF6931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6931_high_10
NF6931_high_10
[»] chr1 (8 HSPs)
chr1 (14-226)||(42475339-42475551)
chr1 (58-225)||(2654628-2654795)
chr1 (58-224)||(52249307-52249470)
chr1 (104-215)||(23451162-23451273)
chr1 (125-219)||(31068714-31068808)
chr1 (123-218)||(22584163-22584258)
chr1 (124-225)||(25393293-25393394)
chr1 (159-219)||(44890076-44890136)
[»] chr7 (10 HSPs)
chr7 (14-227)||(10065216-10065429)
chr7 (123-226)||(16559113-16559216)
chr7 (123-226)||(16606446-16606549)
chr7 (123-226)||(9627218-9627321)
chr7 (127-226)||(27853902-27854001)
chr7 (124-226)||(29375674-29375776)
chr7 (123-226)||(34236244-34236347)
chr7 (129-226)||(37136645-37136742)
chr7 (100-199)||(39931066-39931165)
chr7 (166-226)||(38153686-38153746)
[»] chr8 (5 HSPs)
chr8 (73-226)||(43775275-43775428)
chr8 (103-226)||(38737446-38737569)
chr8 (97-226)||(16839320-16839449)
chr8 (123-226)||(460059-460162)
chr8 (126-185)||(7180007-7180066)
[»] chr4 (14 HSPs)
chr4 (58-225)||(45636457-45636624)
chr4 (58-224)||(8813062-8813228)
chr4 (123-226)||(13609925-13610028)
chr4 (126-224)||(20509417-20509515)
chr4 (98-226)||(5633878-5634006)
chr4 (100-219)||(5726171-5726290)
chr4 (133-219)||(19845575-19845661)
chr4 (100-219)||(5760029-5760148)
chr4 (123-215)||(40155751-40155843)
chr4 (99-185)||(55725190-55725276)
chr4 (104-227)||(296317-296440)
chr4 (126-185)||(33100962-33101021)
chr4 (126-184)||(18920976-18921034)
chr4 (154-190)||(26892210-26892246)
[»] chr5 (8 HSPs)
chr5 (123-226)||(22935629-22935732)
chr5 (127-224)||(32018962-32019059)
chr5 (166-226)||(12832519-12832579)
chr5 (166-226)||(12864494-12864554)
chr5 (168-224)||(25325153-25325209)
chr5 (158-226)||(30723520-30723588)
chr5 (154-185)||(11979161-11979192)
chr5 (127-206)||(33170256-33170335)
[»] chr2 (10 HSPs)
chr2 (103-219)||(21579602-21579718)
chr2 (148-213)||(12807607-12807672)
chr2 (127-226)||(24738839-24738938)
chr2 (123-226)||(30504754-30504857)
chr2 (123-224)||(12605885-12605986)
chr2 (159-226)||(16315211-16315278)
chr2 (166-213)||(36563754-36563801)
chr2 (126-185)||(40430011-40430070)
chr2 (100-185)||(12646092-12646177)
chr2 (158-226)||(20947129-20947198)
[»] chr3 (11 HSPs)
chr3 (82-219)||(35502962-35503099)
chr3 (100-227)||(45967922-45968049)
chr3 (123-224)||(38456746-38456847)
chr3 (100-219)||(18649941-18650060)
chr3 (100-219)||(18689361-18689480)
chr3 (148-218)||(1709804-1709874)
chr3 (126-184)||(6893257-6893315)
chr3 (127-200)||(52907684-52907757)
chr3 (127-206)||(962626-962705)
chr3 (124-226)||(23046226-23046328)
chr3 (100-185)||(52250609-52250693)
[»] chr6 (8 HSPs)
chr6 (123-226)||(2540548-2540651)
chr6 (124-226)||(34600861-34600963)
chr6 (124-226)||(34627406-34627508)
chr6 (131-226)||(34722145-34722240)
chr6 (126-184)||(5668342-5668400)
chr6 (112-226)||(12687209-12687323)
chr6 (126-219)||(18016709-18016802)
chr6 (126-226)||(32197794-32197894)
[»] scaffold0225 (1 HSPs)
scaffold0225 (126-200)||(5553-5627)
[»] scaffold0233 (1 HSPs)
scaffold0233 (154-215)||(11002-11063)
[»] scaffold0155 (1 HSPs)
scaffold0155 (157-205)||(32793-32841)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 42475551 - 42475339
Alignment:
Q  14 cattcccttgaaaccactcccccgaccacaagacagagatttctctccaccaagctgaagcctcacggcctccctccctcaccctaccatcctccacacc 113  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42475551 cattcccttgaaaccactcccccgaccgcaagacagagatttctctccaccaagctgaagcctcacggcctccctccctcaccctaccatcctccacgcc 42475452  T
Q  114 atatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctc 213  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42475451 atatctagacgacaacaccctaaaccataacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctc 42475352  T
Q  214 cttaccaccaaac 226  Q
    |||||| ||||||    
T  42475351 cttacccccaaac 42475339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 225
Target Start/End: Original strand, 2654628 - 2654795
Alignment:
Q  58 ctccaccaagctgaagcctcacggcctccctccctcaccctaccatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctcca 157  Q
    ||||||||| | || |||||  |||| |||||| | || | ||| ||| ||||||| ||||||| ||||||||||||||||||||| |||||||| |||     
T  2654628 ctccaccaaacagaggcctcttggccaccctcctttactcgaccctccaccacaccgtatctagccgacaacaccctaaaccacaaactatctctatccc 2654727  T
Q  158 ccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaaa 225  Q
    | || |||||||||||||||||||||| |||||||| |||||| || ||||||||||| ||| |||||    
T  2654728 ctaataatctccaacaccacttccctagaagagctaaattaaaatctctaattctcctaacccccaaa 2654795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 52249470 - 52249307
Alignment:
Q  58 ctccaccaagctgaagcctcacggcctccctccctcaccctaccatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctcca 157  Q
    ||||||||| | || ||||||||||| |||||| |||| | ||| | |||||| || |||||||  |||||||||||||||||||| | |||| | ||||    
T  52249470 ctccaccaaacagatgcctcacggccaccctccttcactcgacccttctccactccgtatctagcagacaacaccctaaaccacaaacaatctttatcca 52249371  T
Q  158 ccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaa 224  Q
     ||||||||||||||||||||| |    ||| |||| |||||| || ||||||||||||||| ||||    
T  52249370 acaacaatctccaacaccacttac---taagtgctaaattaaaatctctaattctccttacccccaa 52249307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 215
Target Start/End: Complemental strand, 23451273 - 23451162
Alignment:
Q  104 cctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtc 203  Q
    ||||||||||||||| || ||||||||| |||||||| || |||||| | || || ||||| ||||| |||||||||||||| | ||| | |||||| ||    
T  23451273 cctccacaccatatcgagccgacaacacactaaaccataaactatctgtatcaactaacaacctccagcaccacttccctaatacagcaaaattaaaatc 23451174  T
Q  204 cctaattctcct 215  Q
    ||||||||||||    
T  23451173 cctaattctcct 23451162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 31068808 - 31068714
Alignment:
Q  125 acaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttacc 219  Q
    |||||||||||||||| || || || || ||||||||||| | |||||||||||||||||| | ||| | |||||| |||||||| ||| |||||    
T  31068808 acaacaccctaaaccataaactctccctatccaccaacaaccgccaacaccacttccctaataaagcaaaattaaactccctaatactcattacc 31068714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 22584163 - 22584258
Alignment:
Q  123 cgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttac 218  Q
    ||||||||||||||||||||| || || || ||||||||||| |||||||||||| || | || |  || | |||||| |||||| ||||||||||    
T  22584163 cgacaacaccctaaaccacaaactctccctatccaccaacaacctccaacaccacgtctccaataaggcaacattaaactccctacttctccttac 22584258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 225
Target Start/End: Original strand, 25393293 - 25393394
Alignment:
Q  124 gacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccacca 223  Q
    |||| ||||||||||||||| |  ||  ||||| ||||||| ||||||||  ||||||| || ||||| |||||||| |||  ||||||||||||| |||    
T  25393293 gacatcaccctaaaccacaaacactccttctccgccaacaacctccaacattacttccccaacagagcaatattaaactccagaattctccttaccccca 25393392  T
Q  224 aa 225  Q
    ||    
T  25393393 aa 25393394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 44890076 - 44890136
Alignment:
Q  159 caacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttacc 219  Q
    |||||| | |||||||||||||||||| | |||  ||||||| ||||||||||||||||||    
T  44890076 caacaaccgccaacaccacttccctaataaagcactattaaactccctaattctccttacc 44890136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 10065216 - 10065429
Alignment:
Q  14 cattcccttgaaaccactcccccgaccacaagacagagatttctctccaccaagctgaagcctcacggcctccctccctcaccctaccatcctccacacc 113  Q
    |||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||    
T  10065216 cattcccttgaaaccactcctcagaccgcaagacagagatttctctccaccaagatgaagcctcacgacctccctccctcaccctaccatcctccacgcc 10065315  T
Q  114 atatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctc 213  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  10065316 gtatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctgaaagagctatattaaagtcactaattctc 10065415  T
Q  214 cttaccaccaaact 227  Q
    |||||| |||||||    
T  10065416 cttacccccaaact 10065429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 16559216 - 16559113
Alignment:
Q  123 cgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccacc 222  Q
    ||||||||||||||||||||| ||||| || || |||||||| |||||||||||||| ||||| |||||  ||||||| || ||||||||||||||| ||    
T  16559216 cgacaacaccctaaaccacaaactatccctatctaccaacaacctccaacaccactttcctaatagagcattattaaattctctaattctccttaccccc 16559117  T
Q  223 aaac 226  Q
    ||||    
T  16559116 aaac 16559113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 16606446 - 16606549
Alignment:
Q  123 cgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccacc 222  Q
    ||||||||||||||||||||| ||||| || || |||||||| |||||||||||||| ||||| |||||  ||||||| || ||||||||||||||| ||    
T  16606446 cgacaacaccctaaaccacaaactatccctatctaccaacaacctccaacaccactttcctaatagagcattattaaattctctaattctccttaccccc 16606545  T
Q  223 aaac 226  Q
    ||||    
T  16606546 aaac 16606549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 9627321 - 9627218
Alignment:
Q  123 cgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccacc 222  Q
    |||||||||||||||||| || ||||| ||||||| |||||  |||||||||||||||||||| | || | ||| ||| |||||||||||||||| | ||    
T  9627321 cgacaacaccctaaaccataaactatccctctccatcaacagcctccaacaccacttccctaataaagatgtataaaaatccctaattctccttagcccc 9627222  T
Q  223 aaac 226  Q
    ||||    
T  9627221 aaac 9627218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 27854001 - 27853902
Alignment:
Q  127 aacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaaac 226  Q
    ||||||||||||||||| ||||||||||||  |||||  |||||||||||||||||||| | ||||| |||||| ||  | |||||||||||| ||||||    
T  27854001 aacaccctaaaccacaaactatctctctccgtcaacaccctccaacaccacttccctaataaagctaaattaaattcttttattctccttacctccaaac 27853902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 29375674 - 29375776
Alignment:
Q  124 gacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccacca 223  Q
    ||||||||| |||||||||| ||||| | |||||||||||  | |||||||||||||||||  |  || |||||||| |||||||||||||||||| |||    
T  29375674 gacaacaccttaaaccacaaactatcccgctccaccaacatccgccaacaccacttccctagtaacgccatattaaactccctaattctccttaccccca 29375773  T
Q  224 aac 226  Q
    |||    
T  29375774 aac 29375776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 34236347 - 34236244
Alignment:
Q  123 cgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccacc 222  Q
    ||||||||||||||||||||| || ||  | ||  ||||||| ||||||||||||||| |||| |  |||| |||||| |||||||||||||||||| ||    
T  34236347 cgacaacaccctaaaccacaaactctcggtatcacccaacaacctccaacaccacttctctaacaacgctaaattaaactccctaattctccttaccccc 34236248  T
Q  223 aaac 226  Q
    ||||    
T  34236247 aaac 34236244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 37136742 - 37136645
Alignment:
Q  129 caccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaaac 226  Q
    ||||||||||||||| ||||| || |||||||||   |||||||||||||||||||| |  |||| |||||| ||  | |||||||||||| ||||||    
T  37136742 caccctaaaccacaaactatccctatccaccaacgccctccaacaccacttccctaataatgctaaattaaactcttttattctccttacccccaaac 37136645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 39931165 - 39931066
Alignment:
Q  100 ccatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaa 199  Q
    ||||||||||||||||| |||| |  |||||||||| |||||||   ||| | |||||| ||||| | ||||||||| || ||||| ||||| |||||||    
T  39931165 ccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaa 39931066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 38153746 - 38153686
Alignment:
Q  166 ctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaaac 226  Q
    ||||||||| |||||||||| |  || |||||||| || ||||||||||||||| ||||||    
T  38153746 ctccaacactacttccctaacaatgcaatattaaactcactaattctccttacccccaaac 38153686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 73 - 226
Target Start/End: Complemental strand, 43775428 - 43775275
Alignment:
Q  73 gcctcacggcctccctccctcaccctaccatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaac 172  Q
    |||||| |||| ||||||||||||| |||||||||||| ||||| | ||  |||||||||||||||||||| ||||| || || |||||||||||||| |    
T  43775428 gcctcatggccaccctccctcacccgaccatcctccactccataacgagcagacaacaccctaaaccacaaactatcactatcaaccaacaatctccagc 43775329  T
Q  173 accacttccctaaaagagctatattaaagtccctaattctccttaccaccaaac 226  Q
    | ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||    
T  43775328 atcacttccctaacagagcaatattaaagtccctaattctccttacccccaaac 43775275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 38737569 - 38737446
Alignment:
Q  103 tcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagt 202  Q
    ||||||||||| ||||||| ||| ||||||||| ||||||| |||||||  ||||| || ||||||||||||||||||||||| ||||||| |||||| |    
T  38737569 tcctccacaccgtatctagccgataacaccctataccacaaactatctcgatccactaataatctccaacaccacttccctaatagagctaaattaaaat 38737470  T
Q  203 ccctaattctccttaccaccaaac 226  Q
    | ||||||||||| ||| ||||||    
T  38737469 ctctaattctcctaacccccaaac 38737446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 226
Target Start/End: Complemental strand, 16839449 - 16839320
Alignment:
Q  97 ctaccatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatat 196  Q
    ||||| ||||||| |||||| ||||  ||||||||| |||||||||| || || ||||||| |||||  | |||||| ||||| || |  | ||| ||||    
T  16839449 ctaccctcctccaaaccatacctagctgacaacaccttaaaccacaaactctccctctccatcaacatccgccaacatcacttaccaagtaaagcgatat 16839350  T
Q  197 taaagtccctaattctccttaccaccaaac 226  Q
    |||| || ||||||||||||||| ||||||    
T  16839349 taaactctctaattctccttacccccaaac 16839320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 460059 - 460162
Alignment:
Q  123 cgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccacc 222  Q
    ||||| ||||||||||||||| |||||||| || |||||||| |||||| || | || ||||| |  ||   |||||| |||||||||||||||||| ||    
T  460059 cgacatcaccctaaaccacaaactatctctatcaaccaacaacctccaatacaattttcctaataatgcataattaaactccctaattctccttaccccc 460158  T
Q  223 aaac 226  Q
    ||||    
T  460159 aaac 460162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 7180007 - 7180066
Alignment:
Q  126 caacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaa 185  Q
    ||||||||||||||| || ||||| || ||||||||||  | ||||||||||||||||||    
T  7180007 caacaccctaaaccataaactatccctatccaccaacacccgccaacaccacttccctaa 7180066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 225
Target Start/End: Complemental strand, 45636624 - 45636457
Alignment:
Q  58 ctccaccaagctgaagcctcacggcctccctccctcaccctaccatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctcca 157  Q
    ||||||||| | || |||||  |||| |||||| | || | ||| ||| ||||||| ||||||| ||||||||||||||||||||| |||||||| |||     
T  45636624 ctccaccaaacagaggcctcttggccaccctcctttactcgaccctccaccacaccgtatctagccgacaacaccctaaaccacaaactatctctatccc 45636525  T
Q  158 ccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaaa 225  Q
    | || |||||||||||||||||||||| |||||||| |||||| || ||||||||||| ||| |||||    
T  45636524 ctaataatctccaacaccacttccctagaagagctaaattaaaatctctaattctcctaacccccaaa 45636457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 8813228 - 8813062
Alignment:
Q  58 ctccaccaagctgaagcctcacggcctccctccctcaccctaccatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctcca 157  Q
    ||||||||| | || |||||||| || |||||| |||| |  || ||||||||| | |||||||  ||||||||| |||||||||| |||||||| ||||    
T  8813228 ctccaccaaacagatgcctcacgaccaccctccttcacacgcccctcctccacatcgtatctagcagacaacaccataaaccacaaactatctctatcca 8813129  T
Q  158 ccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaa 224  Q
    |||||||||||||||| ||||| |||| ||| |||| |||||| || ||||||||| ||||| ||||    
T  8813128 ccaacaatctccaacatcacttacctataagggctaaattaaaatctctaattctcgttacccccaa 8813062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 13609925 - 13610028
Alignment:
Q  123 cgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccacc 222  Q
    |||||||||||||||||| || ||||| ||||||| |||||  |||||||||||||||||||| | || | ||| ||| |||||||||||||||| | ||    
T  13609925 cgacaacaccctaaaccataaactatccctctccatcaacagcctccaacaccacttccctaataaagatgtataaaaatccctaattctccttagcccc 13610024  T
Q  223 aaac 226  Q
    ||||    
T  13610025 aaac 13610028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 20509515 - 20509417
Alignment:
Q  126 caacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaa 224  Q
    ||||||||||||||| ||    || |||||| ||||||  ||||||||||||||||||||||||||||||||||| || ||||| ||||||||| ||||    
T  20509515 caacaccctaaaccataatgactccctctcctccaacatcctccaacaccacttccctaaaagagctatattaaactctctaatactccttacccccaa 20509417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 5634006 - 5633878
Alignment:
Q  98 taccatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatatt 197  Q
    ||||| ||||| | |||||||| || |||||||||||| ||||||| || ||  |||| || |||||||||||||||||||| ||||| |  ||  ||||    
T  5634006 taccaccctcctctccatatctcgaagacaacaccctataccacaaactctccttctcaactaacaatctccaacaccacttacctaataatgcactatt 5633907  T
Q  198 aaagtccctaattctccttaccaccaaac 226  Q
    ||| || ||||||||||||||| ||||||    
T  5633906 aaactcactaattctccttacctccaaac 5633878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 5726290 - 5726171
Alignment:
Q  100 ccatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaa 199  Q
    ||||||||| ||||||| ||||  ||||||||||||||||| || || ||  ||||||||||||| | ||||||||| |||| || |||| | |||||||    
T  5726290 ccatcctcctcaccatagctagctgacaacaccctaaaccataaactctccttctccaccaacaaccgccaacaccatttccttagaagaacaatattaa 5726191  T
Q  200 agtccctaattctccttacc 219  Q
    | ||| ||||||||| ||||    
T  5726190 actccttaattctccatacc 5726171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 19845661 - 19845575
Alignment:
Q  133 ctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctata-ttaaagtccctaattctccttacc 219  Q
    |||||||| || ||||| |||||||||||||| | |||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||    
T  19845661 ctaaaccaaaaactatccctctccaccaacaaccgccaacaccacttacctaaaagagc-atagttaaactccctaattctccttacc 19845575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 5760148 - 5760029
Alignment:
Q  100 ccatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaa 199  Q
    ||||||||| || |||| ||||  ||||||||||||||||| || || ||  ||||||||||||| | ||||||||| |||| || |||| | |||||||    
T  5760148 ccatcctcctcagcatacctagctgacaacaccctaaaccataaactctccttctccaccaacaaccgccaacaccatttccttagaagaacaatattaa 5760049  T
Q  200 agtccctaattctccttacc 219  Q
    | ||| ||||||||| ||||    
T  5760048 actccttaattctccgtacc 5760029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 40155751 - 40155843
Alignment:
Q  123 cgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctcct 215  Q
    ||||||||||||||||||||| |||||  | ||||||||||| | ||||||| |||||||||| |  |||| |||||| ||  ||||||||||    
T  40155751 cgacaacaccctaaaccacaaactatccatatccaccaacaaccgccaacactacttccctaataatgctaaattaaaatctttaattctcct 40155843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 55725276 - 55725190
Alignment:
Q  99 accatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaa 185  Q
    |||||||||||||||||| |||| |  |||||||||| |||| || | |||||| || || ||||| ||||||||||| ||||||||    
T  55725276 accatcctccacaccatacctagccaccaacaccctataccataatccatctctatctactaacaacctccaacaccatttccctaa 55725190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 296440 - 296317
Alignment:
Q  104 cctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtc 203  Q
    ||||||| |||||||  | ||||||||||||| || |||| || || || ||   ||||||||||||||||||||| ||||| |  ||  ||||||  ||    
T  296440 cctccactccatatcgggccgacaacaccctacacgacaaactctccctatctgtcaacaatctccaacaccacttacctaacaacgcattattaatctc 296341  T
Q  204 cctaattctccttaccaccaaact 227  Q
    |||| ||||||||||| |||||||    
T  296340 cctacttctccttacccccaaact 296317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 33101021 - 33100962
Alignment:
Q  126 caacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaa 185  Q
    |||||||||||||||||| || ||  ||||||||||||  | ||||||||||||||||||    
T  33101021 caacaccctaaaccacaaactctccttctccaccaacacccgccaacaccacttccctaa 33100962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 18921034 - 18920976
Alignment:
Q  126 caacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttcccta 184  Q
    |||||||||||||||||| ||||| || || |||||||  ||||| |||||||||||||    
T  18921034 caacaccctaaaccacaaactatccctatctaccaacaccctccagcaccacttcccta 18920976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 26892246 - 26892210
Alignment:
Q  154 tccaccaacaatctccaacaccacttccctaaaagag 190  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  26892246 tccaccaacaacctccaacaccacttacctaaaagag 26892210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 22935732 - 22935629
Alignment:
Q  123 cgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccacc 222  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||  |||||||||| |||||||| | || | ||||||| |||||||||||||||||| ||    
T  22935732 cgacaacaccctaaaccacaaactatccctctccatcaacaacttccaacaccaattccctaataaagttgtattaaaatccctaattctccttaccccc 22935633  T
Q  223 aaac 226  Q
    ||||    
T  22935632 aaac 22935629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 32018962 - 32019059
Alignment:
Q  127 aacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaa 224  Q
    ||||||||||||||||| ||||||||||||  |||||  |||||||||||||||||||| | ||||| |||||| ||  | |||||||||||| ||||    
T  32018962 aacaccctaaaccacaaactatctctctccgtcaacaccctccaacaccacttccctaataaagctaaattaaattcttttattctccttacccccaa 32019059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 12832519 - 12832579
Alignment:
Q  166 ctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaaac 226  Q
    ||||| |||||||||||||||||||| |||||||| || ||||| ||||||||| ||||||    
T  12832519 ctccagcaccacttccctaaaagagcgatattaaactctctaatactccttacccccaaac 12832579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 12864494 - 12864554
Alignment:
Q  166 ctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaaac 226  Q
    ||||| |||||||||||||||||||| |||||||| || ||||| ||||||||| ||||||    
T  12864494 ctccagcaccacttccctaaaagagcgatattaaactctctaatactccttacccccaaac 12864554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 25325209 - 25325153
Alignment:
Q  168 ccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaa 224  Q
    |||||||||||||||||| | ||||| |||||| |||||||||||||||||| ||||    
T  25325209 ccaacaccacttccctaataaagctaaattaaattccctaattctccttacccccaa 25325153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 30723520 - 30723588
Alignment:
Q  158 ccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaaac 226  Q
    ||||||| ||||||||||| |||||||| |  |||| |||||| |||||||||||||||||| ||||||    
T  30723520 ccaacaacctccaacaccatttccctaacaacgctaaattaaactccctaattctccttacccccaaac 30723588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 185
Target Start/End: Complemental strand, 11979192 - 11979161
Alignment:
Q  154 tccaccaacaatctccaacaccacttccctaa 185  Q
    ||||||||||||||||||||||||||||||||    
T  11979192 tccaccaacaatctccaacaccacttccctaa 11979161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 33170256 - 33170335
Alignment:
Q  127 aacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccct 206  Q
    |||||||||  |||||||| ||||||||| || ||||| ||||||||||| || ||||| | ||| |||||||| |||||    
T  33170256 aacaccctacgccacaacccatctctctctactaacaacctccaacaccattttcctaacaaagcaatattaaactccct 33170335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 21579602 - 21579718
Alignment:
Q  103 tcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagt 202  Q
    |||||||||||||| | || ||||||||||| | |||||||  |||| || ||||||| ||| |||||||||||||||||||| | |||  ||||||| |    
T  21579602 tcctccacaccataacgagccgacaacacccgataccacaagttatccctatccaccagcaacctccaacaccacttccctaataaagcactattaaact 21579701  T
Q  203 ccctaattctccttacc 219  Q
    |||||||||||||||||    
T  21579702 ccctaattctccttacc 21579718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 12807672 - 12807607
Alignment:
Q  148 tctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctc 213  Q
    ||||| |||||||||||||||||||||||||||||||| |||| || |||||| ||||||||||||    
T  12807672 tctctatccaccaacaatctccaacaccacttccctaacagagataaattaaactccctaattctc 12807607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 24738938 - 24738839
Alignment:
Q  127 aacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaaac 226  Q
    ||||||||||||||||| ||||||||||||  ||| |  |||||||||||||||||||  | ||||| |||||| ||  | |||||||||||| ||||||    
T  24738938 aacaccctaaaccacaaactatctctctccgtcaataccctccaacaccacttccctagtaaagctaaattaaattcttttattctccttacccccaaac 24738839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 30504857 - 30504754
Alignment:
Q  123 cgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccacc 222  Q
    |||||||||||||| ||| || || || || ||| |||||||   ||||||| |||||||||| ||||| |||||||| ||||||||||||| |||| ||    
T  30504857 cgacaacaccctaatccataaactctccctatcctccaacaaatgccaacactacttccctaacagagcaatattaaactccctaattctccgtaccccc 30504758  T
Q  223 aaac 226  Q
    ||||    
T  30504757 aaac 30504754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 12605986 - 12605885
Alignment:
Q  123 cgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccacc 222  Q
    |||||||||  || |||| || |||||||| || | |||||| |||||||||||||||||||| | ||| | |||||| || ||||||||||||||| ||    
T  12605986 cgacaacacagtataccataaactatctctatctatcaacaacctccaacaccacttccctaataaagcaacattaaaatctctaattctccttaccgcc 12605887  T
Q  223 aa 224  Q
    ||    
T  12605886 aa 12605885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 16315278 - 16315211
Alignment:
Q  159 caacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaaac 226  Q
    ||||| |||||||||||||||||| || | || ||  ||||| |||||||||||||||||| ||||||    
T  16315278 caacagtctccaacaccacttcccaaacatagataatttaaattccctaattctccttacccccaaac 16315211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 36563801 - 36563754
Alignment:
Q  166 ctccaacaccacttccctaaaagagctatattaaagtccctaattctc 213  Q
    ||||||||||||||||| |||||||| |||||||| | ||||||||||    
T  36563801 ctccaacaccacttccccaaaagagccatattaaatttcctaattctc 36563754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 40430011 - 40430070
Alignment:
Q  126 caacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaa 185  Q
    |||||||||||||||||| ||||| || |||| |||||  | ||||||||||||||||||    
T  40430011 caacaccctaaaccacaaactatccctatccatcaacacccgccaacaccacttccctaa 40430070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 12646092 - 12646177
Alignment:
Q  100 ccatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaa 185  Q
    |||||||||||||| || |||| |  |||||||||| ||||||| | |||||| || || ||||| ||||||||||| || |||||    
T  12646092 ccatcctccacaccttacctagccaccaacaccctataccacaatccatctctatctactaacaacctccaacaccattttcctaa 12646177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 20947198 - 20947129
Alignment:
Q  158 ccaacaatctccaacacc-acttccctaaaagagctatattaaagtccctaattctccttaccaccaaac 226  Q
    ||||||| ||||||| || | |||||||| |  ||||||||||| |||||||||||||||||| ||||||    
T  20947198 ccaacaacctccaacccccatttccctaacaacgctatattaaactccctaattctccttacccccaaac 20947129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 35503099 - 35502962
Alignment:
Q  82 cctccctccctcaccctaccatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttcc 181  Q
    ||||| ||| |||||| |||| |||||||  |||| |||| || |||||||||||||||||| || ||  |||||| |||||| | ||||||||||||||    
T  35503099 cctccatccttcacccgaccaccctccaccacatacctagccgccaacaccctaaaccacaaactctccttctccatcaacaaccgccaacaccacttcc 35503000  T
Q  182 ctaaaagagctatattaaagtccctaattctccttacc 219  Q
    | || | |||  ||||||| ||||||||||||||||||    
T  35502999 caaacaaagcactattaaactccctaattctccttacc 35502962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 227
Target Start/End: Original strand, 45967922 - 45968049
Alignment:
Q  100 ccatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaa 199  Q
    ||||||||||||||||| |  | | ||||||| ||| ||||||||||||| || ||||||  ||| |||||||||||||||| ||| | ||| || ||||    
T  45967922 ccatcctccacaccataacgtgccaacaacactctataccacaacctatccctatccaccggcaacctccaacaccacttccttaataaagcaatgttaa 45968021  T
Q  200 agtccctaattctccttaccaccaaact 227  Q
    | |||||||||||||||| | |||||||    
T  45968022 actccctaattctccttatccccaaact 45968049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 38456746 - 38456847
Alignment:
Q  123 cgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccacc 222  Q
    ||||||||||||| ||||||| ||||| || ||||||||  | ||||||| |||||| ||||| | ||| |||||||| |||||||||||||||||| ||    
T  38456746 cgacaacaccctataccacaaactatccctatccaccaaacacctccaaccccacttgcctaataaagcaatattaaactccctaattctccttacctcc 38456845  T
Q  223 aa 224  Q
    ||    
T  38456846 aa 38456847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 18650060 - 18649941
Alignment:
Q  100 ccatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaa 199  Q
    ||||||||| ||||||| ||||  ||||||||||||||||| || || ||  ||||||||||||| | ||||||||| |||| || |||| | |||||||    
T  18650060 ccatcctcctcaccatagctagctgacaacaccctaaaccataaactctccttctccaccaacaaccgccaacaccatttccttagaagaacaatattaa 18649961  T
Q  200 agtccctaattctccttacc 219  Q
    | ||| ||||||||| ||||    
T  18649960 actccttaattctccatacc 18649941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 18689480 - 18689361
Alignment:
Q  100 ccatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaa 199  Q
    ||||||||| || |||| ||||  ||||||||||||||||| || || ||  ||||||||||||| | ||||||||| |||| || |||| | |||||||    
T  18689480 ccatcctcctcagcatacctagctgacaacaccctaaaccataaactctccttctccaccaacaaccgccaacaccatttccttagaagaacaatattaa 18689381  T
Q  200 agtccctaattctccttacc 219  Q
    | ||| ||||||||| ||||    
T  18689380 actccttaattctccgtacc 18689361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 1709874 - 1709804
Alignment:
Q  148 tctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttac 218  Q
    ||||| ||||||||||  ||||||||||| |||||||| | |||||||||||| || |||||| |||||||    
T  1709874 tctctgtccaccaacatcctccaacaccagttccctaagatagctatattaaactctctaattttccttac 1709804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 6893315 - 6893257
Alignment:
Q  126 caacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttcccta 184  Q
    |||||||||||||||||| |||||  ||||||||||||  | |||||||||||||||||    
T  6893315 caacaccctaaaccacaaactatccttctccaccaacatccgccaacaccacttcccta 6893257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 52907757 - 52907684
Alignment:
Q  127 aacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaa 200  Q
    ||||||||| |||||||||  ||||| || || |||| |||||||||||||||||||| |||||| | ||||||    
T  52907757 aacaccctataccacaacccctctctatcaactaacattctccaacaccacttccctagaagagccagattaaa 52907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 962705 - 962626
Alignment:
Q  127 aacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccct 206  Q
    |||||||||  |||||||| ||||||||| || ||||| ||||||||||| || ||||| | ||| |||||||| |||||    
T  962705 aacaccctacgccacaacccatctctctctactaacaacctccaacaccattttcctaacaaagcaatattaaactccct 962626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 23046328 - 23046226
Alignment:
Q  124 gacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccacca 223  Q
    ||||||||||||||||| || || ||  | |||||||||||  || | |||||||||||||  |  || |||||||||||| ||||||| |||||| |||    
T  23046328 gacaacaccctaaaccataaactctccttatccaccaacaacatctagcaccacttccctagtaaggcaatattaaagtccttaattctacttaccccca 23046229  T
Q  224 aac 226  Q
    |||    
T  23046228 aac 23046226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 52250693 - 52250609
Alignment:
Q  100 ccatcctccacaccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaa 185  Q
    ||||||||| |||||||||| | |  |||||||||| |||| || ||| | |||||||||||||| | ||||||||| ||||||||    
T  52250693 ccatcctcctcaccatatctcgccaccaacaccctataccataaactacc-ctctccaccaacaaacgccaacaccatttccctaa 52250609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 2540548 - 2540651
Alignment:
Q  123 cgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccacc 222  Q
    ||||||||||||||||||||| |||||  | || | |||||| |||||||||||||| ||||| |||||  ||||||| || ||||||||||||| | ||    
T  2540548 cgacaacaccctaaaccacaaactatccttatctatcaacaacctccaacaccactttcctaatagagcattattaaattctctaattctccttatcccc 2540647  T
Q  223 aaac 226  Q
    ||||    
T  2540648 aaac 2540651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 34600861 - 34600963
Alignment:
Q  124 gacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccacca 223  Q
    |||| ||||||||||||||  || || |||||||||||||  | |||||||||||||| ||| |  ||  ||||||| |||||||||||||||||| |||    
T  34600861 gacagcaccctaaaccacatactctccctctccaccaacatccgccaacaccacttccttaacaacgcactattaaactccctaattctccttaccccca 34600960  T
Q  224 aac 226  Q
    |||    
T  34600961 aac 34600963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 34627406 - 34627508
Alignment:
Q  124 gacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccacca 223  Q
    |||| ||||||||||||||  || || |||||||||||||  | |||||||||||||| ||| |  ||  ||||||| |||||||||||||||||| |||    
T  34627406 gacagcaccctaaaccacatactctccctctccaccaacatccgccaacaccacttccttaacaacgcactattaaactccctaattctccttaccccca 34627505  T
Q  224 aac 226  Q
    |||    
T  34627506 aac 34627508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 34722145 - 34722240
Alignment:
Q  131 ccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaaac 226  Q
    ||||||||||||  || || |||||||||||||  | |||||||||||||| ||| |  ||  ||||||| |||||||||||||||||| ||||||    
T  34722145 ccctaaaccacatactctccctctccaccaacatccgccaacaccacttccttaacaacgcactattaaactccctaattctccttacccccaaac 34722240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 5668342 - 5668400
Alignment:
Q  126 caacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttcccta 184  Q
    |||||||||||||||||| |||||  ||||||||||||  | |||||||||||||||||    
T  5668342 caacaccctaaaccacaaactatccttctccaccaacatccgccaacaccacttcccta 5668400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 226
Target Start/End: Complemental strand, 12687323 - 12687209
Alignment:
Q  112 ccatatctagacgacaacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattc 211  Q
    ||||| |||| ||||| |||||||||||| ||  ||||  ||||  ||||||  | |||||||||||||||||| | ||||| ||| || |||||||| |    
T  12687323 ccatacctagccgacagcaccctaaaccataatgtatccttctcatccaacatccgccaacaccacttccctaacaaagctaaattgaattccctaatac 12687224  T
Q  212 tccttaccaccaaac 226  Q
    |||||||| ||||||    
T  12687223 tccttacccccaaac 12687209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 18016709 - 18016802
Alignment:
Q  126 caacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttacc 219  Q
    |||||||||| ||||||| || ||  ||||||||||||  | |||||||||||||||||| |  | || |||||| ||  ||||||||||||||    
T  18016709 caacaccctataccacaaactttccttctccaccaacacccgccaacaccacttccctaataacgttaaattaaattctttaattctccttacc 18016802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 32197794 - 32197894
Alignment:
Q  126 caacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctccttaccaccaaa 225  Q
    |||||||||||||||||  |||||  | ||| ||||||| ||||| ||||| || || |  | ||| |||||||| |||||||||||||| ||| |||||    
T  32197794 caacaccctaaaccacatactatcattatcctccaacaacctccagcaccatttacccagcaaagccatattaaactccctaattctcctaacccccaaa 32197893  T
Q  226 c 226  Q
    |    
T  32197894 c 32197894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 5627 - 5553
Alignment:
Q  126 caacaccctaaaccacaacctatctctctccaccaacaatctccaacaccacttccctaaaagagctatattaaa 200  Q
    |||||||||||||||||| || ||  ||||||||||||  | |||||||||||||||||| | ||||| ||||||    
T  5627 caacaccctaaaccacaaactctccttctccaccaacacccgccaacaccacttccctaataaagctaaattaaa 5553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 11063 - 11002
Alignment:
Q  154 tccaccaacaatctccaacaccacttccctaaaagagctatattaaagtccctaattctcct 215  Q
    ||||||||||| | |||||||||||||||||| | ||| ||||| ||  |||||||||||||    
T  11063 tccaccaacaaccgccaacaccacttccctaataaagcaatattgaacaccctaattctcct 11002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 32793 - 32841
Alignment:
Q  157 accaacaatctccaacaccacttccctaaaagagctatattaaagtccc 205  Q
    |||||||| |||||||||||||||||||| | ||||| |||||| ||||    
T  32793 accaacaacctccaacaccacttccctaataaagctaaattaaattccc 32841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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